Rmu_sc0024309.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024309.1
OG0000087
Physical Location & Seq
Reverse (-)
2 .. 1741
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024309.1_g000001.1.cds

Sequence Viewer

Length: 1602 bp
atgtgggacttgtgccagcaagggtggccttccataaatgagttccgcgcggtacaccgagtactgtactctaggaagcagtcttgtgcgggtacagtgacctttgtcgctagggattacgagccgctagttactgatatgcctacctcgatgagcaaaaggtggaggaacaaagtgttcctagctggggggcggtggcagataaaaaataagaagtggcagctgaccggtaccttccaagctatcggggaccagtcctatacgctatccgacctagaaaggaagaggatagcccgggtatatgccgtgtggtcagagaaagagatgagctcttataggttcatccggcactctatactttataggctagggttagggtggctccccgataagggacttattatattatacacattgaaagccccgaagaggaaaccccggaaaggcaaggaggaggacaggatggatgatgcccaactgatggacatgctgatgggccaaggagaagatgctctgcacatcgacgtcgacctagggtcgaaaggcacgagtcggtctattgaagagacccttttggagatcaccgatgagggatacggggagcctgaccccgacgctcccgtgacccacgccgcgcagccctccatggccgatgtcattacgatagatgacaccggaatgggaaaagcaccggcctcagtgcctatttcctctcgttgcactgggagcgatgaggcgttactccccggtgagaagaagagatcccacagtcaccggcatcgaactgataaggaggtgacgtacactggccgggatgtccagggtactggtgcgaagaggcaaaagaaagaccacccaggatcagggccgtcgccttctcttggcctgttatctccccccgttccggtaatccccgagaagcccatcaagcagctgctgaatgaatacggggttgccgacgaaaagtttgtgcggtccatgcttggggatctgaaggatattgacctcgaccgggttcgagccaaagataacactccccaggagaatcgccgtctcgcccgggaatcaatgatgagggcactcttcaatgtgtatgccatcgaccccagcgaggaagatactcatctgaaggaggaggttagcaatctctccgggcaagtgaagtatcttcatggcgagaaggccaagctggagaaggagcgggactcattgagggctgagatggccgcctctaagcagcggattgcggagcttgagggtgaggttgttgaggcatgggaggaggtaaagaacgcccgggactccgagaaaaaggctacagagtctgccatctcatggaaggagaaggcagaccatctggaggatcgccttcccgcggagaggcacgaggccgtggaggagtacaagtcctcggatgagcttatctcgatgctggctgctgcccaagataaggctgtcatcatgaagtttaaggagtgggtggcggtcgggtacttagatgaagccaaattcagacggggtttcctggagaaaaggaagaaggatagggaggcggcggtcaagtccggtgccggtgggtctcagagtaccgatggcgatcgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

534

Amino Acids

60.27

Weight (kDa)

6.9

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 528
Acc65I GGTACC 1 cut(s) 230
AccB1I GGYRCC 2 cut(s) 230, 1568
AccB7I CCANNNNNTGG 2 cut(s) 481, 1335
AccBSI CCGCTC 1 cut(s) 1201
AccI GTMKAC 1 cut(s) 528
AccII CGCG 4 cut(s) 48, 50, 635, 1376
AclWI GGATC 4 cut(s) 756, 868, 996, 1371
AcoI YGGCCR 3 cut(s) 648, 808, 1224
AcsI RAATTY 1 cut(s) 1508
AcuI CTGAAG 2 cut(s) 1013, 1148
AcyI GRCGYC 1 cut(s) 525
AgeI ACCGGT 1 cut(s) 227
AgsI TTSAA 3 cut(s) 418, 563, 1087
AhdI GACNNNNNGTC 1 cut(s) 535
AjnI CCWGG 4 cut(s) 819, 856, 1038, 1524
AluBI AGCT 8 cut(s) 185, 223, 242, 330, 934, 1189, 1252, 1420
AluI AGCT 8 cut(s) 185, 223, 242, 330, 934, 1189, 1252, 1420
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 3 cut(s) 560, 1058, 1584
AlwI GGATC 4 cut(s) 756, 868, 996, 1371
AlwNI CAGNNNCTG 2 cut(s) 937, 1325
Ama87I CYCGRG 4 cut(s) 294, 914, 1059, 1296
ApeKI GCWGC 7 cut(s) 220, 637, 931, 934, 1237, 1436, 1439
ApoI RAATTY 1 cut(s) 1508
ArsI GACNNNNNNTTYG 2 cut(s) 950, 982
AsiGI ACCGGT 1 cut(s) 227
Asp718I GGTACC 1 cut(s) 230
AspA2I CCTAGG 1 cut(s) 532
AspLEI GCGC 2 cut(s) 50, 637
AspS9I GGNCC 4 cut(s) 250, 496, 866, 975
AsuHPI GGTGA 5 cut(s) 574, 761, 764, 808, 1271
AvaI CYCGRG 4 cut(s) 294, 914, 1059, 1296
AvaII GGWCC 2 cut(s) 250, 975
AvrII CCTAGG 1 cut(s) 532
BaeGI GKGCMC 1 cut(s) 1081
BanI GGYRCC 2 cut(s) 230, 1568
BanII GRGCYC 1 cut(s) 332
BauI CACGAG 2 cut(s) 547, 1385
Bbv12I GWGCWC 1 cut(s) 332
BbvI GCAGC 7 cut(s) 232, 649, 921, 943, 1249, 1423, 1426
BccI CCATC 9 cut(s) 457, 475, 487, 932, 1106, 1216, 1337, 1362, 1586
BceAI ACGGC 4 cut(s) 290, 853, 1035, 1376
BciT130I CCWGG 4 cut(s) 821, 858, 1040, 1526
BciVI GTATCC 1 cut(s) 587
BcoDI GTCTC 3 cut(s) 560, 1058, 1584
BfaI CTAG 7 cut(s) 72, 111, 128, 182, 275, 368, 533
BfmI CTRYAG 1 cut(s) 1317
BfuI GTATCC 1 cut(s) 587
BlnI CCTAGG 1 cut(s) 532
BmcAI AGTACT 1 cut(s) 63
Bme18I GGWCC 2 cut(s) 250, 975
BmeRI GACNNNNNGTC 1 cut(s) 535
BmeT110I CYCGRG 4 cut(s) 294, 914, 1059, 1296
BmgT120I GGNCC 4 cut(s) 250, 496, 866, 975
BmiI GGNNCC 5 cut(s) 232, 251, 383, 603, 1570
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 4 cut(s) 460, 499, 787, 1419
BmuI ACTGGG 1 cut(s) 732
BoxI GACNNNNGTC 1 cut(s) 104
BplI GAGNNNNNCTC 6 cut(s) 314, 346, 1190, 1222, 1409, 1441
BpmI CTGGAG 3 cut(s) 1211, 1379, 1547
BpuEI CTTGAG 1 cut(s) 1274
BsaBI GATNNNNATC 2 cut(s) 1122, 1596
BsaHI GRCGYC 1 cut(s) 525
BsaI GGTCTC 2 cut(s) 560, 1584
BsaWI WCCGGW 4 cut(s) 227, 674, 904, 1565
BsaXI ACNNNNNCTCC 4 cut(s) 785, 815, 1391, 1421
Bse118I RCCGGY 4 cut(s) 227, 691, 774, 1571
Bse1I ACTGG 4 cut(s) 253, 727, 811, 832
Bse8I GATNNNNATC 2 cut(s) 1122, 1596
BseBI CCWGG 4 cut(s) 821, 858, 1040, 1526
BseGI GGATG 5 cut(s) 342, 468, 472, 820, 1420
BseJI GATNNNNATC 2 cut(s) 1122, 1596
BseMII CTCAG 3 cut(s) 711, 1209, 1595
BseNI ACTGG 4 cut(s) 253, 727, 811, 832
BseRI GAGGAG 4 cut(s) 467, 1148, 1295, 1412
BseSI GKGCMC 1 cut(s) 1081
BseXI GCAGC 7 cut(s) 232, 649, 921, 943, 1249, 1423, 1426
BseYI CCCAGC 2 cut(s) 185, 1106
BsgI GTGCAG 1 cut(s) 500
Bsh1236I CGCG 4 cut(s) 48, 50, 635, 1376
Bsh1285I CGRYCG 3 cut(s) 1012, 1488, 1600
BshNI GGYRCC 2 cut(s) 230, 1568
BshTI ACCGGT 1 cut(s) 227
BsiEI CGRYCG 3 cut(s) 1012, 1488, 1600
BsiHKAI GWGCWC 1 cut(s) 332
BsiHKCI CYCGRG 4 cut(s) 294, 914, 1059, 1296
BslFI GGGAC 5 cut(s) 20, 263, 408, 1217, 1313
BsmAI GTCTC 3 cut(s) 560, 1058, 1584
BsmBI CGTCTC 1 cut(s) 1058
BsmFI GGGAC 5 cut(s) 20, 263, 408, 1217, 1313
Bso31I GGTCTC 2 cut(s) 560, 1584
BsoBI CYCGRG 4 cut(s) 294, 914, 1059, 1296
Bsp1286I GDGCHC 2 cut(s) 332, 1081
Bsp143I GATC 6 cut(s) 579, 761, 860, 988, 1363, 1597
Bsp19I CCATGG 1 cut(s) 645
BspCNI CTCAG 3 cut(s) 710, 1210, 1594
BspFNI CGCG 4 cut(s) 48, 50, 635, 1376
BspHI TCATGA 1 cut(s) 1461
BspLI GGNNCC 5 cut(s) 232, 251, 383, 603, 1570
BspPI GGATC 4 cut(s) 756, 868, 996, 1371
BspT107I GGYRCC 2 cut(s) 230, 1568
BspTNI GGTCTC 2 cut(s) 560, 1584
BsrBI CCGCTC 1 cut(s) 1201
BsrFI RCCGGY 4 cut(s) 227, 691, 774, 1571
BsrI ACTGG 4 cut(s) 253, 727, 811, 832
BssAI RCCGGY 4 cut(s) 227, 691, 774, 1571
BssMI GATC 6 cut(s) 579, 761, 860, 988, 1363, 1597
BssNI GRCGYC 1 cut(s) 525
BssSI CACGAG 2 cut(s) 547, 1385
BssT1I CCWWGG 3 cut(s) 499, 532, 645
Bst2BI CACGAG 2 cut(s) 547, 1385
Bst2UI CCWGG 4 cut(s) 821, 858, 1040, 1526
Bst4CI ACNGT 3 cut(s) 66, 97, 770
Bst6I CTCTTC 6 cut(s) 278, 422, 558, 752, 830, 1088
BstACI GRCGYC 1 cut(s) 525
BstC8I GCNNGC 2 cut(s) 17, 1434
BstDEI CTNAG 5 cut(s) 697, 1218, 1233, 1495, 1581
BstDSI CCRYGG 3 cut(s) 645, 1374, 1392
BstF5I GGATG 5 cut(s) 342, 468, 472, 820, 1420
BstFNI CGCG 4 cut(s) 48, 50, 635, 1376
BstHHI GCGC 2 cut(s) 50, 637
BstKTI GATC 6 cut(s) 582, 764, 863, 991, 1366, 1600
BstMAI GTCTC 3 cut(s) 560, 1058, 1584
BstMBI GATC 6 cut(s) 579, 761, 860, 988, 1363, 1597
BstMCI CGRYCG 3 cut(s) 1012, 1488, 1600
BstMWI GCNNNNNNNGC 5 cut(s) 25, 726, 928, 979, 1223
BstNI CCWGG 4 cut(s) 821, 858, 1040, 1526
BstNSI RCATGY 1 cut(s) 490
BstPAI GACNNNNGTC 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 1317
BstSLI GKGCMC 1 cut(s) 1081
BstUI CGCG 4 cut(s) 48, 50, 635, 1376
BstV1I GCAGC 7 cut(s) 232, 649, 921, 943, 1249, 1423, 1426
BstX2I RGATCY 2 cut(s) 761, 988
BstXI CCANNNNNNTGG 1 cut(s) 827
BstYI RGATCY 2 cut(s) 761, 988
BsuI GTATCC 1 cut(s) 587
BtgI CCRYGG 3 cut(s) 645, 1374, 1392
BtgZI GCGATG 1 cut(s) 744
BtsCI GGATG 5 cut(s) 342, 468, 472, 820, 1420
BtsIMutI CAGTG 4 cut(s) 102, 705, 720, 804
Cac8I GCNNGC 2 cut(s) 17, 1434
CaiI CAGNNNCTG 2 cut(s) 937, 1325
CciI TCATGA 1 cut(s) 1461
CfoI GCGC 2 cut(s) 50, 637
Cfr10I RCCGGY 4 cut(s) 227, 691, 774, 1571
Cfr13I GGNCC 4 cut(s) 250, 496, 866, 975
Cfr42I CCGCGG 1 cut(s) 1377
Cfr9I CCCGGG 3 cut(s) 294, 1059, 1296
CseI GACGC 1 cut(s) 623
CspAI ACCGGT 1 cut(s) 227
CviAII CATG 7 cut(s) 487, 646, 979, 1172, 1275, 1335, 1462
DdeI CTNAG 5 cut(s) 697, 1218, 1233, 1495, 1581
DpnI GATC 6 cut(s) 581, 763, 862, 990, 1365, 1599
DpnII GATC 6 cut(s) 579, 761, 860, 988, 1363, 1597
DriI GACNNNNNGTC 1 cut(s) 535
EaeI YGGCCR 3 cut(s) 648, 808, 1224
Eam1104I CTCTTC 6 cut(s) 278, 422, 558, 752, 830, 1088
Eam1105I GACNNNNNGTC 1 cut(s) 535
EarI CTCTTC 6 cut(s) 278, 422, 558, 752, 830, 1088
Ecl136II GAGCTC 1 cut(s) 330
Eco130I CCWWGG 3 cut(s) 499, 532, 645
Eco24I GRGCYC 1 cut(s) 332
Eco31I GGTCTC 2 cut(s) 560, 1584
Eco47I GGWCC 2 cut(s) 250, 975
Eco53kI GAGCTC 1 cut(s) 330
Eco57I CTGAAG 2 cut(s) 1013, 1148
Eco88I CYCGRG 4 cut(s) 294, 914, 1059, 1296
EcoICRI GAGCTC 1 cut(s) 330
EcoRII CCWGG 4 cut(s) 819, 856, 1038, 1524
EcoT14I CCWWGG 3 cut(s) 499, 532, 645
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 3 cut(s) 499, 532, 645
Esp3I CGTCTC 1 cut(s) 1058
FaeI CATG 7 cut(s) 490, 649, 982, 1175, 1278, 1338, 1465
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FaqI GGGAC 5 cut(s) 20, 263, 408, 1217, 1313
FatI CATG 7 cut(s) 486, 645, 978, 1171, 1274, 1334, 1461
FauI CCCGC 3 cut(s) 82, 1194, 1381
FblI GTMKAC 1 cut(s) 528
FokI GGATG 5 cut(s) 329, 475, 479, 827, 1427
FriOI GRGCYC 1 cut(s) 332
FspBI CTAG 7 cut(s) 72, 111, 128, 182, 275, 368, 533
GlaI GCGC 2 cut(s) 49, 636
GsaI CCCAGC 2 cut(s) 189, 1110
GsuI CTGGAG 3 cut(s) 1211, 1379, 1547
HgaI GACGC 1 cut(s) 623
HhaI GCGC 2 cut(s) 50, 637
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 7 cut(s) 490, 649, 982, 1175, 1278, 1338, 1465
Hin6I GCGC 2 cut(s) 48, 635
HinP1I GCGC 2 cut(s) 48, 635
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 6 cut(s) 550, 1045, 1064, 1205, 1301, 1322
HphI GGTGA 5 cut(s) 574, 761, 764, 808, 1271
Hpy166II GTNNAC 3 cut(s) 55, 529, 804
Hpy188I TCNGA 8 cut(s) 271, 316, 993, 1128, 1306, 1414, 1514, 1584
Hpy188III TCNNGA 3 cut(s) 1358, 1426, 1462
Hpy8I GTNNAC 3 cut(s) 55, 529, 804
Hpy99I CGWCG 5 cut(s) 527, 530, 617, 874, 962
HpyCH4III ACNGT 3 cut(s) 66, 97, 770
HpyCH4IV ACGT 2 cut(s) 525, 800
HpyCH4V TGCA 2 cut(s) 517, 720
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 726, 928, 979, 1223
HpyF3I CTNAG 5 cut(s) 697, 1218, 1233, 1495, 1581
HpySE526I ACGT 2 cut(s) 525, 800
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 7 cut(s) 490, 649, 982, 1175, 1278, 1338, 1465
HspAI GCGC 2 cut(s) 48, 635
KpnI GGTACC 1 cut(s) 234
KspI CCGCGG 1 cut(s) 1377
Kzo9I GATC 6 cut(s) 579, 761, 860, 988, 1363, 1597
LmnI GCTCC 6 cut(s) 387, 601, 622, 726, 1198, 1249
Lsp1109I GCAGC 7 cut(s) 232, 649, 921, 943, 1249, 1423, 1426
LweI GCATC 4 cut(s) 460, 499, 787, 1419
MaeI CTAG 7 cut(s) 72, 111, 128, 182, 275, 368, 533
MaeII ACGT 2 cut(s) 525, 800
MaeIII GTNAC 6 cut(s) 97, 130, 622, 738, 770, 796
MalI GATC 6 cut(s) 581, 763, 862, 990, 1365, 1599
MbiI CCGCTC 1 cut(s) 1201
MboI GATC 6 cut(s) 579, 761, 860, 988, 1363, 1597
MflI RGATCY 2 cut(s) 761, 988
MhlI GDGCHC 2 cut(s) 332, 1081
MluCI AATT 1 cut(s) 1508
MlyI GAGTC 4 cut(s) 559, 1199, 1295, 1331
MmeI TCCRAC 1 cut(s) 294
MseI TTAA 1 cut(s) 1470
MslI CAYNNNNRTG 2 cut(s) 491, 677
MspA1I CMGCKG 4 cut(s) 223, 934, 1240, 1376
MvaI CCWGG 4 cut(s) 821, 858, 1040, 1526
MvnI CGCG 4 cut(s) 48, 50, 635, 1376
MwoI GCNNNNNNNGC 5 cut(s) 25, 726, 928, 979, 1223
NcoI CCATGG 1 cut(s) 645
NdeII GATC 6 cut(s) 579, 761, 860, 988, 1363, 1597
NlaIII CATG 7 cut(s) 490, 649, 982, 1175, 1278, 1338, 1465
NlaIV GGNNCC 5 cut(s) 232, 251, 383, 603, 1570
NmuCI GTSAC 4 cut(s) 97, 622, 770, 796
NspI RCATGY 1 cut(s) 490
PagI TCATGA 1 cut(s) 1461
PcsI WCGNNNNNNNCGW 3 cut(s) 545, 954, 1107
PfeI GAWTC 2 cut(s) 1045, 1064
PflMI CCANNNNNTGG 2 cut(s) 481, 1335
PfoI TCCNGGA 1 cut(s) 1524
PinAI ACCGGT 1 cut(s) 227
Ple19I CGATCG 1 cut(s) 1600
PleI GAGTC 4 cut(s) 558, 1199, 1295, 1330
PpsI GAGTC 4 cut(s) 558, 1199, 1295, 1330
PshAI GACNNNNGTC 1 cut(s) 104
Psp124BI GAGCTC 1 cut(s) 332
Psp6I CCWGG 4 cut(s) 819, 856, 1038, 1524
PspFI CCCAGC 2 cut(s) 185, 1106
PspGI CCWGG 4 cut(s) 819, 856, 1038, 1524
PspN4I GGNNCC 5 cut(s) 232, 251, 383, 603, 1570
PspPI GGNCC 4 cut(s) 250, 496, 866, 975
PstNI CAGNNNCTG 2 cut(s) 937, 1325
PsuI RGATCY 2 cut(s) 761, 988
PvuI CGATCG 1 cut(s) 1600
PvuII CAGCTG 2 cut(s) 223, 934
RseI CAYNNNNRTG 2 cut(s) 491, 677
SacI GAGCTC 1 cut(s) 332
SacII CCGCGG 1 cut(s) 1377
SalI GTCGAC 1 cut(s) 527
SaqAI TTAA 1 cut(s) 1470
Sau3AI GATC 6 cut(s) 579, 761, 860, 988, 1363, 1597
Sau96I GGNCC 4 cut(s) 250, 496, 866, 975
ScaI AGTACT 1 cut(s) 63
SchI GAGTC 4 cut(s) 559, 1199, 1295, 1331
SduI GDGCHC 2 cut(s) 332, 1081
SfaNI GCATC 4 cut(s) 460, 499, 787, 1419
SfcI CTRYAG 1 cut(s) 1317
Sfr303I CCGCGG 1 cut(s) 1377
SgrBI CCGCGG 1 cut(s) 1377
SinI GGWCC 2 cut(s) 250, 975
SmaI CCCGGG 3 cut(s) 296, 1061, 1298
SmiMI CAYNNNNRTG 2 cut(s) 491, 677
SmlI CTYRAG 1 cut(s) 1253
SmoI CTYRAG 1 cut(s) 1253
Sse9I AATT 1 cut(s) 1508
SspMI CTAG 7 cut(s) 72, 111, 128, 182, 275, 368, 533
SstI GAGCTC 1 cut(s) 332
StyI CCWWGG 3 cut(s) 499, 532, 645
TaaI ACNGT 3 cut(s) 66, 97, 770
TaiI ACGT 2 cut(s) 528, 803
TaqI TCGA 9 cut(s) 149, 522, 528, 539, 781, 1008, 1018, 1101, 1427
TaqII GACCGA 1 cut(s) 543
TasI AATT 1 cut(s) 1508
TatI WGTACW 3 cut(s) 61, 66, 1401
TauI GCSGC 4 cut(s) 127, 635, 1229, 1556
TfiI GAWTC 2 cut(s) 1045, 1064
Tru1I TTAA 1 cut(s) 1470
Tru9I TTAA 1 cut(s) 1470
TscAI CASTG 4 cut(s) 102, 705, 727, 811
TseFI GTSAC 4 cut(s) 97, 622, 770, 796
TseI GCWGC 7 cut(s) 220, 637, 931, 934, 1237, 1436, 1439
Tsp45I GTSAC 4 cut(s) 97, 622, 770, 796
TspDTI ATGAA 5 cut(s) 331, 957, 1160, 1478, 1515
TspMI CCCGGG 3 cut(s) 294, 1059, 1296
TspRI CASTG 4 cut(s) 102, 705, 727, 811
Van91I CCANNNNNTGG 2 cut(s) 481, 1335
VpaK11BI GGWCC 2 cut(s) 250, 975
XapI RAATTY 1 cut(s) 1508
XceI RCATGY 1 cut(s) 490
XmaI CCCGGG 3 cut(s) 294, 1059, 1296
XmaJI CCTAGG 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 7 cut(s) 72, 111, 128, 182, 275, 368, 533
ZraI GACGTC 1 cut(s) 526
ZrmI AGTACT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.