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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 109 |
| AccI | GTMKAC | 1 cut(s) | 202 |
| AciI | CCGC | 4 cut(s) | 113, 149, 152, 290 |
| AcyI | GRCGYC | 3 cut(s) | 110, 199, 324 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 102, 103, 194, 195, 259 |
| AflIII | ACRYGT | 1 cut(s) | 300 |
| AgsI | TTSAA | 5 cut(s) | 28, 185, 320, 338, 377 |
| AluBI | AGCT | 1 cut(s) | 55 |
| AluI | AGCT | 1 cut(s) | 55 |
| AoxI | GGCC | 1 cut(s) | 59 |
| ApeKI | GCWGC | 1 cut(s) | 84 |
| AspLEI | GCGC | 2 cut(s) | 112, 240 |
| AsuC2I | CCSGG | 3 cut(s) | 99, 196, 347 |
| AsuHPI | GGTGA | 1 cut(s) | 184 |
| BanI | GGYRCC | 1 cut(s) | 109 |
| BanII | GRGCYC | 1 cut(s) | 420 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 369, 401 |
| BauI | CACGAG | 1 cut(s) | 116 |
| BbsI | GAAGAC | 1 cut(s) | 327 |
| BbvI | GCAGC | 1 cut(s) | 71 |
| BccI | CCATC | 5 cut(s) | 74, 96, 132, 272, 289 |
| BceAI | ACGGC | 1 cut(s) | 297 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 410 |
| BciVI | GTATCC | 1 cut(s) | 401 |
| BcnI | CCSGG | 3 cut(s) | 99, 196, 347 |
| BfoI | RGCGCY | 2 cut(s) | 113, 241 |
| BfuI | GTATCC | 1 cut(s) | 401 |
| BisI | GCNGC | 3 cut(s) | 85, 113, 152 |
| BlsI | GCNGC | 3 cut(s) | 86, 114, 153 |
| Bme1390I | CCNGG | 3 cut(s) | 99, 196, 347 |
| BmiI | GGNNCC | 2 cut(s) | 111, 417 |
| BmrFI | CCNGG | 3 cut(s) | 99, 196, 347 |
| BmsI | GCATC | 2 cut(s) | 176, 418 |
| BpiI | GAAGAC | 1 cut(s) | 327 |
| Bpu10I | CCTNAGC | 1 cut(s) | 56 |
| BpuEI | CTTGAG | 1 cut(s) | 50 |
| BpuMI | CCSGG | 3 cut(s) | 99, 196, 347 |
| BsaHI | GRCGYC | 3 cut(s) | 110, 199, 324 |
| BsaJI | CCNNGG | 2 cut(s) | 97, 133 |
| BsaWI | WCCGGW | 2 cut(s) | 40, 388 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 102, 103, 194, 195, 259 |
| BseDI | CCNNGG | 2 cut(s) | 97, 133 |
| BseGI | GGATG | 2 cut(s) | 107, 184 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 102, 103, 194, 195, 259 |
| BseXI | GCAGC | 1 cut(s) | 71 |
| BshFI | GGCC | 1 cut(s) | 61 |
| BshNI | GGYRCC | 1 cut(s) | 109 |
| BsiSI | CCGG | 5 cut(s) | 41, 99, 195, 347, 389 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 102, 103, 194, 195, 259 |
| BsmI | GAATGC | 1 cut(s) | 216 |
| BsnI | GGCC | 1 cut(s) | 61 |
| Bsp1286I | GDGCHC | 1 cut(s) | 420 |
| Bsp143I | GATC | 1 cut(s) | 9 |
| BspACI | CCGC | 4 cut(s) | 113, 149, 152, 290 |
| BspANI | GGCC | 1 cut(s) | 61 |
| BspLI | GGNNCC | 2 cut(s) | 111, 417 |
| BspT107I | GGYRCC | 1 cut(s) | 109 |
| BssECI | CCNNGG | 2 cut(s) | 97, 133 |
| BssMI | GATC | 1 cut(s) | 9 |
| BssNI | GRCGYC | 3 cut(s) | 110, 199, 324 |
| BssSI | CACGAG | 1 cut(s) | 116 |
| BssT1I | CCWWGG | 1 cut(s) | 133 |
| Bst2BI | CACGAG | 1 cut(s) | 116 |
| BstACI | GRCGYC | 3 cut(s) | 110, 199, 324 |
| BstDEI | CTNAG | 1 cut(s) | 56 |
| BstF5I | GGATG | 2 cut(s) | 107, 184 |
| BstH2I | RGCGCY | 2 cut(s) | 113, 241 |
| BstHHI | GCGC | 2 cut(s) | 112, 240 |
| BstKTI | GATC | 1 cut(s) | 12 |
| BstMBI | GATC | 1 cut(s) | 9 |
| BstNSI | RCATGY | 1 cut(s) | 304 |
| BstSCI | CCNGG | 3 cut(s) | 97, 194, 345 |
| BstV1I | GCAGC | 1 cut(s) | 71 |
| BstV2I | GAAGAC | 1 cut(s) | 327 |
| BsuI | GTATCC | 1 cut(s) | 401 |
| BsuRI | GGCC | 1 cut(s) | 61 |
| BtsCI | GGATG | 2 cut(s) | 107, 184 |
| CfoI | GCGC | 2 cut(s) | 112, 240 |
| CseI | GACGC | 2 cut(s) | 188, 332 |
| CviAII | CATG | 3 cut(s) | 19, 46, 301 |
| CviJI | RGCY | 8 cut(s) | 55, 61, 84, 139, 252, 312, 359, 418 |
| CviKI_1 | RGCY | 8 cut(s) | 55, 61, 84, 139, 252, 312, 359, 418 |
| DdeI | CTNAG | 1 cut(s) | 56 |
| DinI | GGCGCC | 1 cut(s) | 111 |
| DpnI | GATC | 1 cut(s) | 11 |
| DpnII | GATC | 1 cut(s) | 9 |
| Eco130I | CCWWGG | 1 cut(s) | 133 |
| Eco147I | AGGCCT | 1 cut(s) | 61 |
| Eco24I | GRGCYC | 1 cut(s) | 420 |
| EcoT14I | CCWWGG | 1 cut(s) | 133 |
| EcoT38I | GRGCYC | 1 cut(s) | 420 |
| EgeI | GGCGCC | 1 cut(s) | 111 |
| EheI | GGCGCC | 1 cut(s) | 111 |
| ErhI | CCWWGG | 1 cut(s) | 133 |
| FaeI | CATG | 3 cut(s) | 22, 49, 304 |
| FaiI | YATR | 3 cut(s) | 20, 47, 302 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 312, 344 |
| FatI | CATG | 3 cut(s) | 18, 45, 300 |
| FblI | GTMKAC | 1 cut(s) | 202 |
| Fnu4HI | GCNGC | 3 cut(s) | 85, 113, 152 |
| FokI | GGATG | 2 cut(s) | 114, 191 |
| FriOI | GRGCYC | 1 cut(s) | 420 |
| Fsp4HI | GCNGC | 3 cut(s) | 85, 113, 152 |
| GlaI | GCGC | 2 cut(s) | 111, 239 |
| GluI | GCNGC | 3 cut(s) | 85, 113, 152 |
| HaeII | RGCGCY | 2 cut(s) | 113, 241 |
| HaeIII | GGCC | 1 cut(s) | 61 |
| HapII | CCGG | 5 cut(s) | 41, 99, 195, 347, 389 |
| HgaI | GACGC | 2 cut(s) | 188, 332 |
| HhaI | GCGC | 2 cut(s) | 112, 240 |
| Hin1I | GRCGYC | 3 cut(s) | 110, 199, 324 |
| Hin1II | CATG | 3 cut(s) | 22, 49, 304 |
| Hin6I | GCGC | 2 cut(s) | 110, 238 |
| HinP1I | GCGC | 2 cut(s) | 110, 238 |
| HincII | GTYRAC | 2 cut(s) | 203, 343 |
| HindII | GTYRAC | 2 cut(s) | 203, 343 |
| HinfI | GANTC | 2 cut(s) | 89, 350 |
| HpaII | CCGG | 5 cut(s) | 41, 99, 195, 347, 389 |
| HphI | GGTGA | 1 cut(s) | 184 |
| Hpy166II | GTNNAC | 2 cut(s) | 203, 343 |
| Hpy188III | TCNNGA | 1 cut(s) | 73 |
| Hpy8I | GTNNAC | 2 cut(s) | 203, 343 |
| Hpy99I | CGWCG | 1 cut(s) | 204 |
| HpyAV | CCTTC | 4 cut(s) | 261, 338, 349, 398 |
| HpyCH4V | TGCA | 1 cut(s) | 214 |
| HpyF3I | CTNAG | 1 cut(s) | 56 |
| Hsp92I | GRCGYC | 3 cut(s) | 110, 199, 324 |
| Hsp92II | CATG | 3 cut(s) | 22, 49, 304 |
| HspAI | GCGC | 2 cut(s) | 110, 238 |
| KasI | GGCGCC | 1 cut(s) | 109 |
| Kzo9I | GATC | 1 cut(s) | 9 |
| LmnI | GCTCC | 3 cut(s) | 374, 415, 436 |
| LpnPI | CCDG | 5 cut(s) | 54, 112, 208, 360, 402 |
| Lsp1109I | GCAGC | 1 cut(s) | 71 |
| LweI | GCATC | 2 cut(s) | 176, 418 |
| MaeIII | GTNAC | 1 cut(s) | 190 |
| MalI | GATC | 1 cut(s) | 11 |
| MboI | GATC | 1 cut(s) | 9 |
| MboII | GAAGA | 2 cut(s) | 332, 389 |
| MhlI | GDGCHC | 1 cut(s) | 420 |
| Mly113I | GGCGCC | 1 cut(s) | 110 |
| MlyI | GAGTC | 1 cut(s) | 344 |
| MnlI | CCTC | 2 cut(s) | 72, 103 |
| MslI | CAYNNNNRTG | 2 cut(s) | 17, 305 |
| MspA1I | CMGCKG | 1 cut(s) | 292 |
| MspI | CCGG | 5 cut(s) | 41, 99, 195, 347, 389 |
| MspR9I | CCNGG | 3 cut(s) | 99, 196, 347 |
| Mva1269I | GAATGC | 1 cut(s) | 216 |
| NarI | GGCGCC | 1 cut(s) | 110 |
| NciI | CCSGG | 3 cut(s) | 99, 196, 347 |
| NdeII | GATC | 1 cut(s) | 9 |
| NlaIII | CATG | 3 cut(s) | 22, 49, 304 |
| NlaIV | GGNNCC | 2 cut(s) | 111, 417 |
| NmuCI | GTSAC | 1 cut(s) | 190 |
| NspI | RCATGY | 1 cut(s) | 304 |
| PceI | AGGCCT | 1 cut(s) | 61 |
| PciI | ACATGT | 1 cut(s) | 300 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 238, 417 |
| PctI | GAATGC | 1 cut(s) | 216 |
| PfeI | GAWTC | 1 cut(s) | 89 |
| PkrI | GCNGC | 3 cut(s) | 86, 114, 153 |
| PleI | GAGTC | 1 cut(s) | 344 |
| PluTI | GGCGCC | 1 cut(s) | 113 |
| PpsI | GAGTC | 1 cut(s) | 344 |
| PscI | ACATGT | 1 cut(s) | 300 |
| PspN4I | GGNNCC | 2 cut(s) | 111, 417 |
| RseI | CAYNNNNRTG | 2 cut(s) | 17, 305 |
| SalI | GTCGAC | 1 cut(s) | 201 |
| SatI | GCNGC | 3 cut(s) | 85, 113, 152 |
| Sau3AI | GATC | 1 cut(s) | 9 |
| SchI | GAGTC | 1 cut(s) | 344 |
| ScrFI | CCNGG | 3 cut(s) | 99, 196, 347 |
| SduI | GDGCHC | 1 cut(s) | 420 |
| SetI | ASST | 3 cut(s) | 57, 72, 264 |
| SfaNI | GCATC | 2 cut(s) | 176, 418 |
| SfoI | GGCGCC | 1 cut(s) | 111 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 17, 305 |
| SmlI | CTYRAG | 1 cut(s) | 65 |
| SmoI | CTYRAG | 1 cut(s) | 65 |
| SseBI | AGGCCT | 1 cut(s) | 61 |
| SsiI | CCGC | 4 cut(s) | 113, 149, 152, 290 |
| SspDI | GGCGCC | 1 cut(s) | 109 |
| StuI | AGGCCT | 1 cut(s) | 61 |
| StyD4I | CCNGG | 3 cut(s) | 97, 194, 345 |
| StyI | CCWWGG | 1 cut(s) | 133 |
| TaqI | TCGA | 3 cut(s) | 202, 219, 353 |
| TauI | GCSGC | 2 cut(s) | 115, 154 |
| TfiI | GAWTC | 1 cut(s) | 89 |
| TseFI | GTSAC | 1 cut(s) | 190 |
| TseI | GCWGC | 1 cut(s) | 84 |
| Tsp45I | GTSAC | 1 cut(s) | 190 |
| TspDTI | ATGAA | 2 cut(s) | 17, 417 |
| TspGWI | ACGGA | 2 cut(s) | 361, 423 |
| XceI | RCATGY | 1 cut(s) | 304 |
| XmiI | GTMKAC | 1 cut(s) | 202 |