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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 422 |
| Acc65I | GGTACC | 1 cut(s) | 449 |
| AccB1I | GGYRCC | 1 cut(s) | 449 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 294 |
| AccI | GTMKAC | 1 cut(s) | 384 |
| AciI | CCGC | 6 cut(s) | 188, 191, 308, 317, 356, 446 |
| AcuI | CTGAAG | 1 cut(s) | 35 |
| AfaI | GTAC | 4 cut(s) | 39, 113, 362, 451 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 34, 40, 294, 338, 357 |
| AflIII | ACRYGT | 1 cut(s) | 108 |
| AgsI | TTSAA | 2 cut(s) | 106, 268 |
| AjnI | CCWGG | 1 cut(s) | 27 |
| AluBI | AGCT | 3 cut(s) | 211, 325, 379 |
| AluI | AGCT | 3 cut(s) | 211, 325, 379 |
| Alw21I | GWGCWC | 2 cut(s) | 213, 327 |
| Ama87I | CYCGRG | 4 cut(s) | 212, 255, 276, 402 |
| AoxI | GGCC | 2 cut(s) | 96, 348 |
| ApeKI | GCWGC | 2 cut(s) | 398, 443 |
| Asp718I | GGTACC | 1 cut(s) | 449 |
| AspS9I | GGNCC | 1 cut(s) | 31 |
| AsuC2I | CCSGG | 4 cut(s) | 35, 81, 256, 257 |
| AsuHPI | GGTGA | 1 cut(s) | 230 |
| AsuNHI | GCTAGC | 1 cut(s) | 4 |
| AvaI | CYCGRG | 4 cut(s) | 212, 255, 276, 402 |
| AvaII | GGWCC | 1 cut(s) | 31 |
| BaeGI | GKGCMC | 1 cut(s) | 256 |
| BanI | GGYRCC | 1 cut(s) | 449 |
| BanII | GRGCYC | 3 cut(s) | 213, 327, 371 |
| Bbv12I | GWGCWC | 2 cut(s) | 213, 327 |
| BbvI | GCAGC | 1 cut(s) | 385 |
| BceAI | ACGGC | 2 cut(s) | 335, 398 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 119, 153 |
| BciT130I | CCWGG | 1 cut(s) | 29 |
| BcnI | CCSGG | 4 cut(s) | 35, 81, 256, 257 |
| BfaI | CTAG | 4 cut(s) | 5, 126, 159, 454 |
| BglII | AGATCT | 1 cut(s) | 201 |
| BisI | GCNGC | 3 cut(s) | 189, 399, 444 |
| BlsI | GCNGC | 3 cut(s) | 190, 400, 445 |
| Bme1390I | CCNGG | 5 cut(s) | 29, 35, 81, 256, 257 |
| Bme18I | GGWCC | 1 cut(s) | 31 |
| BmeT110I | CYCGRG | 4 cut(s) | 212, 255, 276, 402 |
| BmgT120I | GGNCC | 1 cut(s) | 31 |
| BmiI | GGNNCC | 1 cut(s) | 451 |
| BmrFI | CCNGG | 5 cut(s) | 29, 35, 81, 256, 257 |
| BmsI | GCATC | 1 cut(s) | 127 |
| BmtI | GCTAGC | 1 cut(s) | 8 |
| BpuMI | CCSGG | 4 cut(s) | 35, 81, 256, 257 |
| BsaJI | CCNNGG | 1 cut(s) | 255 |
| BsaWI | WCCGGW | 1 cut(s) | 227 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 34, 40, 294, 338, 357 |
| BseBI | CCWGG | 1 cut(s) | 29 |
| BseDI | CCNNGG | 1 cut(s) | 255 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 34, 40, 294, 338, 357 |
| BseMII | CTCAG | 1 cut(s) | 181 |
| BseRI | GAGGAG | 3 cut(s) | 167, 335, 359 |
| BseSI | GKGCMC | 1 cut(s) | 256 |
| BseXI | GCAGC | 1 cut(s) | 385 |
| BshFI | GGCC | 2 cut(s) | 98, 350 |
| BshNI | GGYRCC | 1 cut(s) | 449 |
| BsiHKAI | GWGCWC | 2 cut(s) | 213, 327 |
| BsiHKCI | CYCGRG | 4 cut(s) | 212, 255, 276, 402 |
| BsiSI | CCGG | 5 cut(s) | 34, 80, 182, 228, 256 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 34, 40, 294, 338, 357 |
| BsnI | GGCC | 2 cut(s) | 98, 350 |
| BsoBI | CYCGRG | 4 cut(s) | 212, 255, 276, 402 |
| Bsp1286I | GDGCHC | 4 cut(s) | 213, 256, 327, 371 |
| Bsp143I | GATC | 2 cut(s) | 10, 201 |
| BspACI | CCGC | 6 cut(s) | 188, 191, 308, 317, 356, 446 |
| BspANI | GGCC | 2 cut(s) | 98, 350 |
| BspCNI | CTCAG | 1 cut(s) | 180 |
| BspLI | GGNNCC | 1 cut(s) | 451 |
| BspOI | GCTAGC | 1 cut(s) | 8 |
| BspQI | GCTCTTC | 1 cut(s) | 369 |
| BspT107I | GGYRCC | 1 cut(s) | 449 |
| BssECI | CCNNGG | 1 cut(s) | 255 |
| BssMI | GATC | 2 cut(s) | 10, 201 |
| Bst2UI | CCWGG | 1 cut(s) | 29 |
| Bst6I | CTCTTC | 1 cut(s) | 369 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 1 cut(s) | 167 |
| BstKTI | GATC | 2 cut(s) | 13, 204 |
| BstMBI | GATC | 2 cut(s) | 10, 201 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 314 |
| BstNI | CCWGG | 1 cut(s) | 29 |
| BstNSI | RCATGY | 2 cut(s) | 317, 391 |
| BstSCI | CCNGG | 5 cut(s) | 27, 33, 79, 254, 255 |
| BstSLI | GKGCMC | 1 cut(s) | 256 |
| BstV1I | GCAGC | 1 cut(s) | 385 |
| BstX2I | RGATCY | 1 cut(s) | 201 |
| BstYI | RGATCY | 1 cut(s) | 201 |
| BsuRI | GGCC | 2 cut(s) | 98, 350 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 1 cut(s) | 31 |
| Cfr9I | CCCGGG | 1 cut(s) | 255 |
| Csp6I | GTAC | 4 cut(s) | 38, 112, 361, 450 |
| CviAII | CATG | 3 cut(s) | 294, 314, 388 |
| CviQI | GTAC | 4 cut(s) | 38, 112, 361, 450 |
| DdeI | CTNAG | 1 cut(s) | 167 |
| DpnI | GATC | 2 cut(s) | 12, 203 |
| DpnII | GATC | 2 cut(s) | 10, 201 |
| DraI | TTTAAA | 1 cut(s) | 430 |
| Eam1104I | CTCTTC | 1 cut(s) | 369 |
| EarI | CTCTTC | 1 cut(s) | 369 |
| EciI | GGCGGA | 2 cut(s) | 206, 323 |
| Ecl136II | GAGCTC | 2 cut(s) | 211, 325 |
| Eco24I | GRGCYC | 3 cut(s) | 213, 327, 371 |
| Eco47I | GGWCC | 1 cut(s) | 31 |
| Eco53kI | GAGCTC | 2 cut(s) | 211, 325 |
| Eco57I | CTGAAG | 1 cut(s) | 35 |
| Eco88I | CYCGRG | 4 cut(s) | 212, 255, 276, 402 |
| EcoICRI | GAGCTC | 2 cut(s) | 211, 325 |
| EcoRII | CCWGG | 1 cut(s) | 27 |
| EcoT38I | GRGCYC | 3 cut(s) | 213, 327, 371 |
| FaeI | CATG | 3 cut(s) | 297, 317, 391 |
| FaiI | YATR | 5 cut(s) | 23, 295, 315, 389, 422 |
| FatI | CATG | 3 cut(s) | 293, 313, 387 |
| FauI | CCCGC | 2 cut(s) | 349, 439 |
| FblI | GTMKAC | 1 cut(s) | 384 |
| Fnu4HI | GCNGC | 3 cut(s) | 189, 399, 444 |
| FriOI | GRGCYC | 3 cut(s) | 213, 327, 371 |
| Fsp4HI | GCNGC | 3 cut(s) | 189, 399, 444 |
| FspBI | CTAG | 4 cut(s) | 5, 126, 159, 454 |
| GluI | GCNGC | 3 cut(s) | 189, 399, 444 |
| HaeIII | GGCC | 2 cut(s) | 98, 350 |
| HapII | CCGG | 5 cut(s) | 34, 80, 182, 228, 256 |
| Hin1II | CATG | 3 cut(s) | 297, 317, 391 |
| HincII | GTYRAC | 1 cut(s) | 385 |
| HindII | GTYRAC | 1 cut(s) | 385 |
| HinfI | GANTC | 4 cut(s) | 84, 92, 260, 281 |
| HpaII | CCGG | 5 cut(s) | 34, 80, 182, 228, 256 |
| HphI | GGTGA | 1 cut(s) | 230 |
| Hpy166II | GTNNAC | 3 cut(s) | 112, 221, 385 |
| Hpy188I | TCNGA | 4 cut(s) | 15, 170, 208, 373 |
| Hpy188III | TCNNGA | 2 cut(s) | 278, 404 |
| Hpy8I | GTNNAC | 3 cut(s) | 112, 221, 385 |
| HpyAV | CCTTC | 4 cut(s) | 10, 142, 292, 338 |
| HpyCH4IV | ACGT | 1 cut(s) | 108 |
| HpyCH4V | TGCA | 1 cut(s) | 140 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 314 |
| HpyF3I | CTNAG | 1 cut(s) | 167 |
| HpySE526I | ACGT | 1 cut(s) | 108 |
| Hsp92II | CATG | 3 cut(s) | 297, 317, 391 |
| KpnI | GGTACC | 1 cut(s) | 453 |
| Kzo9I | GATC | 2 cut(s) | 10, 201 |
| LguI | GCTCTTC | 1 cut(s) | 369 |
| LmnI | GCTCC | 3 cut(s) | 208, 322, 330 |
| LpnPI | CCDG | 7 cut(s) | 14, 41, 47, 93, 195, 241, 269 |
| Lsp1109I | GCAGC | 1 cut(s) | 385 |
| LweI | GCATC | 1 cut(s) | 127 |
| MaeI | CTAG | 4 cut(s) | 5, 126, 159, 454 |
| MaeII | ACGT | 1 cut(s) | 108 |
| MaeIII | GTNAC | 1 cut(s) | 161 |
| MalI | GATC | 2 cut(s) | 12, 203 |
| MboI | GATC | 2 cut(s) | 10, 201 |
| MboII | GAAGA | 2 cut(s) | 146, 386 |
| MflI | RGATCY | 1 cut(s) | 201 |
| MhlI | GDGCHC | 4 cut(s) | 213, 256, 327, 371 |
| MseI | TTAA | 3 cut(s) | 234, 336, 429 |
| MspA1I | CMGCKG | 1 cut(s) | 446 |
| MspI | CCGG | 5 cut(s) | 34, 80, 182, 228, 256 |
| MspR9I | CCNGG | 5 cut(s) | 29, 35, 81, 256, 257 |
| MvaI | CCWGG | 1 cut(s) | 29 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 314 |
| NciI | CCSGG | 4 cut(s) | 35, 81, 256, 257 |
| NdeII | GATC | 2 cut(s) | 10, 201 |
| NheI | GCTAGC | 1 cut(s) | 4 |
| NlaIII | CATG | 3 cut(s) | 297, 317, 391 |
| NlaIV | GGNNCC | 1 cut(s) | 451 |
| NspI | RCATGY | 2 cut(s) | 317, 391 |
| PaeR7I | CTCGAG | 2 cut(s) | 212, 276 |
| PciSI | GCTCTTC | 1 cut(s) | 369 |
| PfeI | GAWTC | 4 cut(s) | 84, 92, 260, 281 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 294 |
| PkrI | GCNGC | 3 cut(s) | 190, 400, 445 |
| PsiI | TTATAA | 1 cut(s) | 422 |
| Psp124BI | GAGCTC | 2 cut(s) | 213, 327 |
| Psp6I | CCWGG | 1 cut(s) | 27 |
| PspGI | CCWGG | 1 cut(s) | 27 |
| PspN4I | GGNNCC | 1 cut(s) | 451 |
| PspPI | GGNCC | 1 cut(s) | 31 |
| PspXI | VCTCGAGB | 1 cut(s) | 212 |
| PsuI | RGATCY | 1 cut(s) | 201 |
| RsaI | GTAC | 4 cut(s) | 39, 113, 362, 451 |
| RsaNI | GTAC | 4 cut(s) | 38, 112, 361, 450 |
| SacI | GAGCTC | 2 cut(s) | 213, 327 |
| SalI | GTCGAC | 1 cut(s) | 383 |
| SapI | GCTCTTC | 1 cut(s) | 369 |
| SaqAI | TTAA | 3 cut(s) | 234, 336, 429 |
| SatI | GCNGC | 3 cut(s) | 189, 399, 444 |
| Sau3AI | GATC | 2 cut(s) | 10, 201 |
| Sau96I | GGNCC | 1 cut(s) | 31 |
| ScrFI | CCNGG | 5 cut(s) | 29, 35, 81, 256, 257 |
| SduI | GDGCHC | 4 cut(s) | 213, 256, 327, 371 |
| SetI | ASST | 7 cut(s) | 30, 111, 168, 213, 327, 381, 455 |
| SfaNI | GCATC | 1 cut(s) | 127 |
| Sfr274I | CTCGAG | 2 cut(s) | 212, 276 |
| SinI | GGWCC | 1 cut(s) | 31 |
| SlaI | CTCGAG | 2 cut(s) | 212, 276 |
| SmaI | CCCGGG | 1 cut(s) | 257 |
| SmlI | CTYRAG | 2 cut(s) | 212, 276 |
| SmoI | CTYRAG | 2 cut(s) | 212, 276 |
| SsiI | CCGC | 6 cut(s) | 188, 191, 308, 317, 356, 446 |
| SspMI | CTAG | 4 cut(s) | 5, 126, 159, 454 |
| SstI | GAGCTC | 2 cut(s) | 213, 327 |
| StyD4I | CCNGG | 5 cut(s) | 27, 33, 79, 254, 255 |
| TaiI | ACGT | 1 cut(s) | 111 |
| TaqI | TCGA | 3 cut(s) | 213, 277, 384 |
| TauI | GCSGC | 1 cut(s) | 191 |
| TfiI | GAWTC | 4 cut(s) | 84, 92, 260, 281 |
| Tru1I | TTAA | 3 cut(s) | 234, 336, 429 |
| Tru9I | TTAA | 3 cut(s) | 234, 336, 429 |
| TseI | GCWGC | 2 cut(s) | 398, 443 |
| TspMI | CCCGGG | 1 cut(s) | 255 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 294 |
| VpaK11BI | GGWCC | 1 cut(s) | 31 |
| XceI | RCATGY | 2 cut(s) | 317, 391 |
| XhoI | CTCGAG | 2 cut(s) | 212, 276 |
| XmaI | CCCGGG | 1 cut(s) | 255 |
| XmiI | GTMKAC | 1 cut(s) | 384 |
| XspI | CTAG | 4 cut(s) | 5, 126, 159, 454 |