Rmu_sc0000959.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000959.1
OG0000087
Physical Location & Seq
Forward (+)
44325 .. 47429
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000959.1_g000012.1.cds

Sequence Viewer

Length: 2349 bp
atggggtggagagagcttggctccgatacccgatggggtagatactttgaatctctggtacccgatgggcgatcctacggcagagggcgtttcggtttcgacggtcctgatgcattggagattgaatttaagagggaaactgactgttttccctcacttttcgcgaaaaagaagttcaagagacttggaaggtttgcagccaagagacagggagaaccaagggagaattgtgagtgcctgtggagtgagatcgatcgtctgtcgaggaaaaggttagatctctctctgcttgtggattttgcctattttcttgctaggtttgcttctgctactgccaaggcagttttctatatagcaagatttgaggtccccggtaccgtaattaggatggaatcagaagccaggggtggggatacgggatcgtcgtaccagtcttctgccaggcgagctgaaatggacatcgactggtacctaggctgggtagaccaattagcggagaacacggggtcctccactggggtgttctcggagagtagtggggagtccgatgatggtgagagtgagggtggatttgcggaggctccggtagtcacagtggccattcccgagggcattcctaagccgaggtacacgcttgcggacgggaccttatgcgacgaacctgggagaagcatgacgatgaaggagatcgtagacatgcggctgaagtgggggataccggacgcagtagagcttaggccacttagggatggggagatggccgcgaatcctgccccggggtgggtggcgctgcacgagaatcagctccaccaagggttatcgctacccctgccccggtgcctacagtatctgctgcggatgctgaacctgtcaccggggcagctaaccccgaatgccgttcgccaaatatatagtatgatggccgtgtgggacctgtgccagcaagggtggccttccataaatgagttccgcgcgggattacgagccgctagttgccgatatgcctacctcgatgagcaaaagtcctatacgctatccgaagtggaaaagaagaggatagcccgggtatatgccgtgtggttagagaaagagaggagctcttatagattcatccggcactctatactctttaggctaggattagggtggctccccgtgaaagccccgaagaggaaaccccggaaaggcaaggaggaggacaggatggatgacgctaaactgatggacatgctgatgagccagggagaagatgccctgcacatcgacgtcgaactagggtcgaaaggcacgagtcggtccattgaagagacccttttggagataaccgatgagggatacggtgaacctgatcccgacgctcctgtggcccacgccgtgcagccctccatggccgatgtcattacgatagatgacaccggaatgggaaaagtaccggcctcagtgcctatttcttctccttctactgggagcgatgaggcgttactccccggtgagaagaagagatcccacaagcaccggcatcgaactgataaggaggtgacgtacactggccaggatgtccagggtactggtgcgaagaggcaaaagaaagatcacccgggatcagggccgtcgccttctcttggcctgttatctcccgccgttccggtaatccccaagaagcccatcaagcagctgctgaatgaatacggggttgccgatgaaaagttcacgcggtccatgcttggggatctaaaggatatcgacctcgaccgggttcgagccaaagataatactccccaagagaatcgtcgtctcgcccgggaatcaatgatacgggcactcttcaatgtgtatgccatcgacgccagcgaggaggatactcatatgaaggaggaggttagcaatctctccgggcaggtgaagtaccttcatggagagaaggccaagctggagaaggagcgggactcgttgagggctgagatggccgcctctaagcagcggattgcggagcttgagggcgtggttgctgaggcgcgggaggaggtaaagaacgcccgggactccgagaagaaggctgcagagtctgccgtctcatggaaggagaaggcagactctctggaggatcgcctacccgcggagaggcacgaggccgtggaggagtacaagtcctcggatgagcttatctccatgctggctgctgcccaagataaggctgtcatcatgaagtttaaggagtgggtggcggccgggtatttagatgaggccaaattcaggcggggtctcctggagaaaaggaaaaaggagcgggaggcggcgggcaagtcctgtgccggtgggtctcagagtaccgatggagatcgattgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

782

Amino Acids

87.47

Weight (kDa)

6.03

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1888
AatII GACGTC 1 cut(s) 1269
Acc36I ACCTGC 1 cut(s) 1888
Acc65I GGTACC 3 cut(s) 58, 374, 468
AccB1I GGYRCC 4 cut(s) 58, 374, 468, 837
AccBSI CCGCTC 2 cut(s) 1942, 2287
AccI GTMKAC 2 cut(s) 483, 693
AccII CGCG 7 cut(s) 164, 764, 972, 974, 1714, 2017, 2117
AclWI GGATC 7 cut(s) 66, 427, 1343, 1497, 1609, 1737, 2112
AcoI YGGCCR 7 cut(s) 597, 759, 921, 1389, 1549, 1965, 2226
AcsI RAATTY 2 cut(s) 125, 2249
AcuI CTGAAG 1 cut(s) 725
AcyI GRCGYC 2 cut(s) 1266, 1845
AdeI CACNNNGTG 1 cut(s) 1375
AgsI TTSAA 5 cut(s) 50, 125, 178, 1304, 1828
AjnI CCWGG 7 cut(s) 401, 440, 661, 1239, 1551, 1560, 2265
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AleI CACNNNNGTG 1 cut(s) 518
AloI GAACNNNNNNTCC 2 cut(s) 491, 523
Alw21I GWGCWC 1 cut(s) 1100
Alw26I GTCTC 7 cut(s) 175, 199, 1301, 1799, 2077, 2267, 2325
AlwI GGATC 7 cut(s) 66, 427, 1343, 1497, 1609, 1737, 2112
AlwNI CAGNNNCTG 3 cut(s) 850, 1678, 2066
Ama87I CYCGRG 6 cut(s) 605, 775, 1062, 1597, 1800, 2037
ApoI RAATTY 2 cut(s) 125, 2249
Asp718I GGTACC 3 cut(s) 58, 374, 468
AspA2I CCTAGG 1 cut(s) 472
AspLEI GCGC 3 cut(s) 790, 974, 2017
AspS9I GGNCC 9 cut(s) 104, 367, 507, 645, 931, 1296, 1366, 1607, 1716
AsuHPI GGTGA 7 cut(s) 566, 864, 1352, 1502, 1549, 1586, 1912
AvaI CYCGRG 6 cut(s) 605, 775, 1062, 1597, 1800, 2037
AvaII GGWCC 7 cut(s) 104, 367, 507, 645, 931, 1296, 1716
AvrII CCTAGG 1 cut(s) 472
BaeGI GKGCMC 1 cut(s) 1822
BalI TGGCCA 2 cut(s) 599, 1551
BanI GGYRCC 4 cut(s) 58, 374, 468, 837
BanII GRGCYC 1 cut(s) 1100
BauI CACGAG 3 cut(s) 794, 1288, 2126
BbsI GAAGAC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 1100
BbvCI CCTCAGC 1 cut(s) 2010
BceAI ACGGC 9 cut(s) 94, 881, 908, 1058, 1358, 1594, 1625, 2054, 2117
BcgI CGANNNNNNTGC 2 cut(s) 1502, 1536
BciT130I CCWGG 7 cut(s) 403, 442, 663, 1241, 1553, 1562, 2267
BciVI GTATCC 4 cut(s) 406, 708, 1328, 1852
BcoDI GTCTC 7 cut(s) 175, 199, 1301, 1799, 2077, 2267, 2325
BfaI CTAG 5 cut(s) 315, 473, 990, 1136, 1274
BfmI CTRYAG 2 cut(s) 842, 2058
BfoI RGCGCY 1 cut(s) 791
BfuAI ACCTGC 1 cut(s) 1888
BfuI GTATCC 4 cut(s) 406, 708, 1328, 1852
BglII AGATCT 1 cut(s) 277
BlnI CCTAGG 1 cut(s) 472
Bme18I GGWCC 7 cut(s) 104, 367, 507, 645, 931, 1296, 1716
BmeT110I CYCGRG 6 cut(s) 605, 775, 1062, 1597, 1800, 2037
BmgT120I GGNCC 9 cut(s) 104, 367, 507, 645, 931, 1296, 1366, 1607, 1716
BmrI ACTGGG 2 cut(s) 525, 1473
BmsI GCATC 4 cut(s) 100, 849, 1240, 1528
BmuI ACTGGG 2 cut(s) 525, 1473
BpiI GAAGAC 1 cut(s) 426
BplI GAGNNNNNCTC 7 cut(s) 37, 1082, 1114, 1931, 1963, 2150, 2182
BpmI CTGGAG 3 cut(s) 1952, 2120, 2288
Bpu10I CCTNAGC 3 cut(s) 618, 734, 2010
BpuEI CTTGAG 1 cut(s) 2015
Bsa29I ATCGAT 2 cut(s) 252, 2341
BsaBI GATNNNNATC 1 cut(s) 2337
BsaHI GRCGYC 2 cut(s) 1266, 1845
BsaI GGTCTC 3 cut(s) 1301, 2267, 2325
BsaWI WCCGGW 4 cut(s) 583, 718, 1415, 1645
BsaXI ACNNNNNCTCC 4 cut(s) 1526, 1556, 2132, 2162
Bse118I RCCGGY 3 cut(s) 1432, 1515, 2312
Bse1I ACTGG 6 cut(s) 430, 470, 520, 1468, 1552, 1573
Bse8I GATNNNNATC 1 cut(s) 2337
BseBI CCWGG 7 cut(s) 403, 442, 663, 1241, 1553, 1562, 2267
BseCI ATCGAT 2 cut(s) 252, 2341
BseGI GGATG 8 cut(s) 393, 754, 864, 1110, 1209, 1213, 1561, 2161
BseJI GATNNNNATC 1 cut(s) 2337
BseMII CTCAG 4 cut(s) 1452, 1950, 2001, 2336
BseNI ACTGG 6 cut(s) 430, 470, 520, 1468, 1552, 1573
BseRI GAGGAG 6 cut(s) 1108, 1208, 1868, 1889, 2036, 2153
BseSI GKGCMC 1 cut(s) 1822
BseX3I CGGCCG 1 cut(s) 2226
BseYI CCCAGC 1 cut(s) 477
BsgI GTGCAG 3 cut(s) 776, 1241, 1397
Bsh1236I CGCG 7 cut(s) 164, 764, 972, 974, 1714, 2017, 2117
Bsh1285I CGRYCG 3 cut(s) 256, 1753, 2229
BshNI GGYRCC 4 cut(s) 58, 374, 468, 837
BshVI ATCGAT 2 cut(s) 252, 2341
BsiEI CGRYCG 3 cut(s) 256, 1753, 2229
BsiHKAI GWGCWC 1 cut(s) 1100
BsiHKCI CYCGRG 6 cut(s) 605, 775, 1062, 1597, 1800, 2037
BslFI GGGAC 5 cut(s) 353, 658, 944, 1958, 2054
BsmAI GTCTC 7 cut(s) 175, 199, 1301, 1799, 2077, 2267, 2325
BsmBI CGTCTC 2 cut(s) 1799, 2077
BsmFI GGGAC 5 cut(s) 353, 658, 944, 1958, 2054
BsmI GAATGC 2 cut(s) 612, 898
Bso31I GGTCTC 3 cut(s) 1301, 2267, 2325
BsoBI CYCGRG 6 cut(s) 605, 775, 1062, 1597, 1800, 2037
Bsp1286I GDGCHC 2 cut(s) 1100, 1822
Bsp19I CCATGG 1 cut(s) 1386
Bsp68I TCGCGA 1 cut(s) 164
BspCNI CTCAG 4 cut(s) 1451, 1951, 2002, 2335
BspDI ATCGAT 2 cut(s) 252, 2341
BspFNI CGCG 7 cut(s) 164, 764, 972, 974, 1714, 2017, 2117
BspHI TCATGA 1 cut(s) 2202
BspMAI CTGCAG 1 cut(s) 2062
BspMI ACCTGC 1 cut(s) 1888
BspPI GGATC 7 cut(s) 66, 427, 1343, 1497, 1609, 1737, 2112
BspT107I GGYRCC 4 cut(s) 58, 374, 468, 837
BspTNI GGTCTC 3 cut(s) 1301, 2267, 2325
BsrBI CCGCTC 2 cut(s) 1942, 2287
BsrFI RCCGGY 3 cut(s) 1432, 1515, 2312
BsrI ACTGG 6 cut(s) 430, 470, 520, 1468, 1552, 1573
BssAI RCCGGY 3 cut(s) 1432, 1515, 2312
BssNI GRCGYC 2 cut(s) 1266, 1845
BssSI CACGAG 3 cut(s) 794, 1288, 2126
BssT1I CCWWGG 5 cut(s) 218, 336, 472, 811, 1386
Bst2BI CACGAG 3 cut(s) 794, 1288, 2126
Bst2UI CCWGG 7 cut(s) 403, 442, 663, 1241, 1553, 1562, 2267
Bst4CI ACNGT 6 cut(s) 104, 146, 379, 595, 846, 1340
Bst6I CTCTTC 6 cut(s) 1046, 1163, 1299, 1493, 1571, 1829
BstACI GRCGYC 2 cut(s) 1266, 1845
BstAPI GCANNNNNTGC 1 cut(s) 2066
BstC8I GCNNGC 6 cut(s) 447, 636, 941, 1849, 2175, 2299
BstDEI CTNAG 8 cut(s) 618, 734, 743, 1438, 1959, 1974, 2010, 2322
BstDSI CCRYGG 3 cut(s) 1386, 2115, 2133
BstF5I GGATG 8 cut(s) 393, 754, 864, 1110, 1209, 1213, 1561, 2161
BstFNI CGCG 7 cut(s) 164, 764, 972, 974, 1714, 2017, 2117
BstH2I RGCGCY 1 cut(s) 791
BstHHI GCGC 3 cut(s) 790, 974, 2017
BstMAI GTCTC 7 cut(s) 175, 199, 1301, 1799, 2077, 2267, 2325
BstMCI CGRYCG 3 cut(s) 256, 1753, 2229
BstNI CCWGG 7 cut(s) 403, 442, 663, 1241, 1553, 1562, 2267
BstNSI RCATGY 2 cut(s) 700, 1231
BstSFI CTRYAG 2 cut(s) 842, 2058
BstSLI GKGCMC 1 cut(s) 1822
BstUI CGCG 7 cut(s) 164, 764, 972, 974, 1714, 2017, 2117
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 3 cut(s) 277, 1502, 1729
BstXI CCANNNNNNTGG 1 cut(s) 1568
BstYI RGATCY 3 cut(s) 277, 1502, 1729
BstZI CGGCCG 1 cut(s) 2226
Bsu15I ATCGAT 2 cut(s) 252, 2341
BsuI GTATCC 4 cut(s) 406, 708, 1328, 1852
BsuTUI ATCGAT 2 cut(s) 252, 2341
BtgI CCRYGG 3 cut(s) 1386, 2115, 2133
BtgZI GCGATG 1 cut(s) 1485
BtsCI GGATG 8 cut(s) 393, 754, 864, 1110, 1209, 1213, 1561, 2161
BtsIMutI CAGTG 4 cut(s) 513, 600, 1446, 1545
BtuMI TCGCGA 1 cut(s) 164
BveI ACCTGC 1 cut(s) 1888
Cac8I GCNNGC 6 cut(s) 447, 636, 941, 1849, 2175, 2299
CaiI CAGNNNCTG 3 cut(s) 850, 1678, 2066
CciI TCATGA 1 cut(s) 2202
CfoI GCGC 3 cut(s) 790, 974, 2017
Cfr10I RCCGGY 3 cut(s) 1432, 1515, 2312
Cfr13I GGNCC 9 cut(s) 104, 367, 507, 645, 931, 1296, 1366, 1607, 1716
Cfr42I CCGCGG 1 cut(s) 2118
Cfr9I CCCGGG 5 cut(s) 775, 1062, 1597, 1800, 2037
ClaI ATCGAT 2 cut(s) 252, 2341
CseI GACGC 4 cut(s) 731, 1220, 1364, 1853
CviAII CATG 9 cut(s) 673, 697, 1228, 1387, 1720, 1913, 2076, 2170, 2203
DdeI CTNAG 8 cut(s) 618, 734, 743, 1438, 1959, 1974, 2010, 2322
DraIII CACNNNGTG 1 cut(s) 1375
EaeI YGGCCR 7 cut(s) 597, 759, 921, 1389, 1549, 1965, 2226
EagI CGGCCG 1 cut(s) 2226
Eam1104I CTCTTC 6 cut(s) 1046, 1163, 1299, 1493, 1571, 1829
EarI CTCTTC 6 cut(s) 1046, 1163, 1299, 1493, 1571, 1829
Ecl136II GAGCTC 1 cut(s) 1098
EclXI CGGCCG 1 cut(s) 2226
Eco130I CCWWGG 5 cut(s) 218, 336, 472, 811, 1386
Eco24I GRGCYC 1 cut(s) 1100
Eco31I GGTCTC 3 cut(s) 1301, 2267, 2325
Eco32I GATATC 1 cut(s) 1741
Eco47I GGWCC 7 cut(s) 104, 367, 507, 645, 931, 1296, 1716
Eco52I CGGCCG 1 cut(s) 2226
Eco53kI GAGCTC 1 cut(s) 1098
Eco57I CTGAAG 1 cut(s) 725
Eco88I CYCGRG 6 cut(s) 605, 775, 1062, 1597, 1800, 2037
EcoICRI GAGCTC 1 cut(s) 1098
EcoO109I RGGNCCY 4 cut(s) 367, 507, 645, 931
EcoRII CCWGG 7 cut(s) 401, 440, 661, 1239, 1551, 1560, 2265
EcoRV GATATC 1 cut(s) 1741
EcoT14I CCWWGG 5 cut(s) 218, 336, 472, 811, 1386
EcoT22I ATGCAT 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 1100
ErhI CCWWGG 5 cut(s) 218, 336, 472, 811, 1386
Esp3I CGTCTC 2 cut(s) 1799, 2077
FaeI CATG 9 cut(s) 676, 700, 1231, 1390, 1723, 1916, 2079, 2173, 2206
FalI AAGNNNNNCTT 2 cut(s) 1296, 1328
FaqI GGGAC 5 cut(s) 353, 658, 944, 1958, 2054
FatI CATG 9 cut(s) 672, 696, 1227, 1386, 1719, 1912, 2075, 2169, 2202
FauI CCCGC 8 cut(s) 967, 1645, 1935, 2010, 2122, 2250, 2280, 2290
FauNDI CATATG 1 cut(s) 1866
FblI GTMKAC 2 cut(s) 483, 693
FokI GGATG 8 cut(s) 400, 761, 871, 1097, 1216, 1220, 1568, 2168
FriOI GRGCYC 1 cut(s) 1100
FspBI CTAG 5 cut(s) 315, 473, 990, 1136, 1274
GlaI GCGC 3 cut(s) 789, 973, 2016
GsaI CCCAGC 1 cut(s) 481
GsuI CTGGAG 3 cut(s) 1952, 2120, 2288
HaeII RGCGCY 1 cut(s) 791
HgaI GACGC 4 cut(s) 731, 1220, 1364, 1853
HhaI GCGC 3 cut(s) 790, 974, 2017
Hin1I GRCGYC 2 cut(s) 1266, 1845
Hin1II CATG 9 cut(s) 676, 700, 1231, 1390, 1723, 1916, 2079, 2173, 2206
Hin6I GCGC 3 cut(s) 788, 972, 2015
HinP1I GCGC 3 cut(s) 788, 972, 2015
HphI GGTGA 7 cut(s) 566, 864, 1352, 1502, 1549, 1586, 1912
Hpy166II GTNNAC 6 cut(s) 484, 630, 694, 1343, 1545, 1710
Hpy188I TCNGA 8 cut(s) 25, 397, 529, 547, 1039, 2047, 2155, 2325
Hpy188III TCNNGA 7 cut(s) 107, 163, 178, 605, 1352, 2099, 2203
Hpy8I GTNNAC 6 cut(s) 484, 630, 694, 1343, 1545, 1710
Hpy99I CGWCG 9 cut(s) 104, 427, 659, 1268, 1271, 1358, 1615, 1794, 1847
HpyCH4III ACNGT 6 cut(s) 104, 146, 379, 595, 846, 1340
HpyCH4IV ACGT 2 cut(s) 1266, 1541
HpyCH4V TGCA 6 cut(s) 113, 197, 793, 1258, 1378, 2060
HpyF3I CTNAG 8 cut(s) 618, 734, 743, 1438, 1959, 1974, 2010, 2322
HpySE526I ACGT 2 cut(s) 1266, 1541
Hsp92I GRCGYC 2 cut(s) 1266, 1845
Hsp92II CATG 9 cut(s) 676, 700, 1231, 1390, 1723, 1916, 2079, 2173, 2206
HspAI GCGC 3 cut(s) 788, 972, 2015
KpnI GGTACC 3 cut(s) 62, 378, 472
KspI CCGCGG 1 cut(s) 2118
LweI GCATC 4 cut(s) 100, 849, 1240, 1528
MaeI CTAG 5 cut(s) 315, 473, 990, 1136, 1274
MaeII ACGT 2 cut(s) 1266, 1541
MaeIII GTNAC 4 cut(s) 589, 870, 1479, 1537
MbiI CCGCTC 2 cut(s) 1942, 2287
MflI RGATCY 3 cut(s) 277, 1502, 1729
MhlI GDGCHC 2 cut(s) 1100, 1822
MlsI TGGCCA 2 cut(s) 599, 1551
MluCI AATT 5 cut(s) 125, 226, 381, 488, 2249
MluNI TGGCCA 2 cut(s) 599, 1551
MlyI GAGTC 6 cut(s) 551, 1300, 1940, 2036, 2072, 2087
Mox20I TGGCCA 2 cut(s) 599, 1551
Mph1103I ATGCAT 1 cut(s) 115
MscI TGGCCA 2 cut(s) 599, 1551
MseI TTAA 2 cut(s) 129, 2211
MslI CAYNNNNRTG 4 cut(s) 518, 677, 1232, 1418
Msp20I TGGCCA 2 cut(s) 599, 1551
MspA1I CMGCKG 3 cut(s) 1675, 1981, 2117
Mva1269I GAATGC 2 cut(s) 612, 898
MvaI CCWGG 7 cut(s) 403, 442, 663, 1241, 1553, 1562, 2267
MvnI CGCG 7 cut(s) 164, 764, 972, 974, 1714, 2017, 2117
NcoI CCATGG 1 cut(s) 1386
NdeI CATATG 1 cut(s) 1866
NlaIII CATG 9 cut(s) 676, 700, 1231, 1390, 1723, 1916, 2079, 2173, 2206
NmeAIII GCCGAG 1 cut(s) 648
NmuCI GTSAC 3 cut(s) 589, 870, 1537
NruI TCGCGA 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 115
NspI RCATGY 2 cut(s) 700, 1231
OliI CACNNNNGTG 1 cut(s) 518
PagI TCATGA 1 cut(s) 2202
PaqCI CACCTGC 1 cut(s) 1888
PcsI WCGNNNNNNNCGW 4 cut(s) 422, 1286, 1695, 1848
PctI GAATGC 2 cut(s) 612, 898
PfeI GAWTC 7 cut(s) 50, 392, 766, 799, 1107, 1786, 1805
PfoI TCCNGGA 1 cut(s) 2265
Ple19I CGATCG 1 cut(s) 256
PleI GAGTC 6 cut(s) 550, 1299, 1940, 2036, 2071, 2087
PpsI GAGTC 6 cut(s) 550, 1299, 1940, 2036, 2071, 2087
PpuMI RGGWCCY 4 cut(s) 367, 507, 645, 931
Psp124BI GAGCTC 1 cut(s) 1100
Psp5II RGGWCCY 4 cut(s) 367, 507, 645, 931
Psp6I CCWGG 7 cut(s) 401, 440, 661, 1239, 1551, 1560, 2265
PspFI CCCAGC 1 cut(s) 477
PspGI CCWGG 7 cut(s) 401, 440, 661, 1239, 1551, 1560, 2265
PspPI GGNCC 9 cut(s) 104, 367, 507, 645, 931, 1296, 1366, 1607, 1716
PspPPI RGGWCCY 4 cut(s) 367, 507, 645, 931
PstI CTGCAG 1 cut(s) 2062
PstNI CAGNNNCTG 3 cut(s) 850, 1678, 2066
PsuI RGATCY 3 cut(s) 277, 1502, 1729
PvuI CGATCG 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 1675
RruI TCGCGA 1 cut(s) 164
RseI CAYNNNNRTG 4 cut(s) 518, 677, 1232, 1418
SacI GAGCTC 1 cut(s) 1100
SacII CCGCGG 1 cut(s) 2118
SaqAI TTAA 2 cut(s) 129, 2211
Sau96I GGNCC 9 cut(s) 104, 367, 507, 645, 931, 1296, 1366, 1607, 1716
SchI GAGTC 6 cut(s) 551, 1300, 1940, 2036, 2072, 2087
SduI GDGCHC 2 cut(s) 1100, 1822
SfaNI GCATC 4 cut(s) 100, 849, 1240, 1528
SfcI CTRYAG 2 cut(s) 842, 2058
Sfr303I CCGCGG 1 cut(s) 2118
SgrBI CCGCGG 1 cut(s) 2118
SinI GGWCC 7 cut(s) 104, 367, 507, 645, 931, 1296, 1716
SmaI CCCGGG 5 cut(s) 777, 1064, 1599, 1802, 2039
SmiMI CAYNNNNRTG 4 cut(s) 518, 677, 1232, 1418
SmlI CTYRAG 1 cut(s) 1994
SmoI CTYRAG 1 cut(s) 1994
Sse9I AATT 5 cut(s) 125, 226, 381, 488, 2249
SspMI CTAG 5 cut(s) 315, 473, 990, 1136, 1274
SstI GAGCTC 1 cut(s) 1100
StyI CCWWGG 5 cut(s) 218, 336, 472, 811, 1386
TaaI ACNGT 6 cut(s) 104, 146, 379, 595, 846, 1340
TaiI ACGT 2 cut(s) 1269, 1544
TaqII GACCGA 1 cut(s) 1284
TasI AATT 5 cut(s) 125, 226, 381, 488, 2249
TatI WGTACW 1 cut(s) 2142
TauI GCSGC 6 cut(s) 703, 764, 989, 1970, 2228, 2297
TfiI GAWTC 7 cut(s) 50, 392, 766, 799, 1107, 1786, 1805
Tru1I TTAA 2 cut(s) 129, 2211
Tru9I TTAA 2 cut(s) 129, 2211
TscAI CASTG 4 cut(s) 520, 600, 1446, 1552
TseFI GTSAC 3 cut(s) 589, 870, 1537
Tsp45I GTSAC 3 cut(s) 589, 870, 1537
TspDTI ATGAA 7 cut(s) 695, 1099, 1698, 1716, 1883, 1901, 2219
TspMI CCCGGG 5 cut(s) 775, 1062, 1597, 1800, 2037
TspRI CASTG 4 cut(s) 520, 600, 1446, 1552
VpaK11BI GGWCC 7 cut(s) 104, 367, 507, 645, 931, 1296, 1716
XapI RAATTY 2 cut(s) 125, 2249
XceI RCATGY 2 cut(s) 700, 1231
XmaI CCCGGG 5 cut(s) 775, 1062, 1597, 1800, 2037
XmaJI CCTAGG 1 cut(s) 472
XmiI GTMKAC 2 cut(s) 483, 693
XspI CTAG 5 cut(s) 315, 473, 990, 1136, 1274
ZraI GACGTC 1 cut(s) 1267
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.