Rmu_sc0000904.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000904.1
OG0000087
Physical Location & Seq
Reverse (-)
54216 .. 57238
3023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000904.1_g000013.1.cds

Sequence Viewer

Length: 2136 bp
atggggtggagagagcttcgccctgatacccgatggggtagattccttgaatctctggtacccgatgggcgatcctacggtagtgggcgtttcggtttcgacggttctgatgcgttggagattgaatttaagagggaaactgactgttttccctcacttttcgcgaaaacaagaagctcaggagacttggaaggtttgcagccgagggacagagagaaccgagggagaattgcgagtgcctgtggagtgagatcgactgtctgccgaggaaaaaggttagatctctctctgcctgtggattttgtctattttcttactcggtttgcttctactactaccaaggccgtttggtatatagcaagatttgaggtctccggtaccgtaattaggatggaatcagaagccaggggtggggatacgggatcgttgtaccagtcctctgccaggcaagctgaagtggacatcgaccggtacctaggccgggtacaccaattagcggagaacacggggtcctcgactggggtgttctcggagagtagtggggagtccgacgagggtgagagtgagggtggatctgcggaggctccggtagtcacagtggccattcccgagtgcattcctaagccgacgtacacgcttgcggacgggaccgtatgcgacgaacctgggagaagcatgactatgaaggagatcgtggacatgcggctgaagtggaggataccggacgcggtagagcttaggccacttagggatggggagatggccgccaatcctgccccgggctgggtggcgctgcacgagaatcagctccaccaagggttatcgctacccctaccccggtgcctacagtatctactgcggatgctgaacctgtcaccggggcagctgaccccgaatgccgttcgccaaatatatagtatgatggctatgtgggacctgtgccagcaagggtggccttccataaatgagttccgcgcggtacaccgggtattgtactcaaggaagcagtcttgtgcgggtacggtgacctttgcccctagggattacgagccgctagttaccgatatgcctacctcgatgagcaaaaggtggaggaacaaagtgttcctagctggtgggcggtggcagataaaaaataagaagtggcagctgaccggtacctttcaagctatcggggatcagtcctatacgctatccgaagtggaaaagaagaggatagccctggtatatgccgtgtggtcggagaaagagaggagctcttatagattcattcggcactctatactctttaggctagggttagggtggctccccgtgaaagccccgaagaggaaaccccggaaaggcaaggaggaggacaagatggatgacgctcaactgatggacatgctgatgagccagggagaagatgccctgcacatcgacgtcgacctggggtcaaaaggcacgagtcggtccattgaagagacccttttagagataactgatgagggatacggtgaacctgatcccgacgctcctgtggcccaccccgtgcagccctctatggccgacgtaattatgattgatgacaccggcatgggaaaaatacctgcctctgtgcctatctcttctcgctctactgggagcgatgaggcgctactccccggtgagaagaagagatcccacaagcaccggcgtcgtactgataaggaggtgacatacactggccgggatgtcctgggtgccggtgcgaagaggcaaaagaaagatcacccgggatcagggccgtcagcttcccttggtctgttatctcccgccgttccggtaatccctaagaagcccatcaagcagccgctgaacgaatacggggtcgccgatgaaaagttcgtgcggtccatgcttggggatctgaaggatatcgacctcgaccgggcactctttaatgtgtacgccatcgacgccagtgaggaggatactcacctgaaggaggaggttagcaatttttccgggcagtttaaggagtgggtggcggccgggtatctagatgaggccaaattcaggcggggtctcctggagaaaaagaagaaagagcgggaggcggcgggcaagtctggtgccggcgggtctcagagtaccgatggtgatcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

711

Amino Acids

79.13

Weight (kDa)

7.58

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1428
Acc36I ACCTGC 1 cut(s) 1600
Acc65I GGTACC 4 cut(s) 58, 377, 471, 1157
AccB1I GGYRCC 7 cut(s) 58, 377, 471, 840, 1157, 1724, 2096
AccBSI CCGCTC 1 cut(s) 2074
AccI GTMKAC 1 cut(s) 1428
AccII CGCG 4 cut(s) 164, 728, 975, 977
AclWI GGATC 8 cut(s) 66, 430, 580, 1185, 1502, 1656, 1768, 1896
AcoI YGGCCR 5 cut(s) 600, 762, 1548, 1708, 2013
AcsI RAATTY 2 cut(s) 125, 2036
AcuI CTGAAG 4 cut(s) 474, 728, 1913, 1985
AcyI GRCGYC 3 cut(s) 1425, 1678, 1941
AdeI CACNNNGTG 1 cut(s) 1534
AgeI ACCGGT 2 cut(s) 468, 1154
AgsI TTSAA 4 cut(s) 50, 125, 1166, 1463
AhdI GACNNNNNGTC 1 cut(s) 1435
AjnI CCWGG 8 cut(s) 404, 443, 664, 1221, 1398, 1431, 1719, 2052
AloI GAACNNNNNNTCC 2 cut(s) 494, 526
Alw21I GWGCWC 1 cut(s) 1259
Alw26I GTCTC 5 cut(s) 177, 376, 1460, 2054, 2112
AlwI GGATC 8 cut(s) 66, 430, 580, 1185, 1502, 1656, 1768, 1896
AlwNI CAGNNNCTG 1 cut(s) 1837
Ama87I CYCGRG 3 cut(s) 608, 778, 1756
ApeKI GCWGC 6 cut(s) 199, 793, 883, 1147, 1537, 1831
ApoI RAATTY 2 cut(s) 125, 2036
ArsI GACNNNNNNTTYG 2 cut(s) 1836, 1868
AsiGI ACCGGT 2 cut(s) 468, 1154
Asp718I GGTACC 4 cut(s) 58, 377, 471, 1157
AspA2I CCTAGG 2 cut(s) 475, 1037
AspLEI GCGC 3 cut(s) 793, 977, 1639
AspS9I GGNCC 7 cut(s) 510, 648, 934, 1455, 1525, 1766, 1875
AsuHPI GGTGA 9 cut(s) 569, 867, 1036, 1511, 1661, 1708, 1745, 1952, 2135
AvaI CYCGRG 3 cut(s) 608, 778, 1756
AvaII GGWCC 5 cut(s) 510, 648, 934, 1455, 1875
AvrII CCTAGG 2 cut(s) 475, 1037
BaeGI GKGCMC 1 cut(s) 1918
BalI TGGCCA 1 cut(s) 602
BanI GGYRCC 7 cut(s) 58, 377, 471, 840, 1157, 1724, 2096
BanII GRGCYC 1 cut(s) 1259
BauI CACGAG 2 cut(s) 797, 1447
Bbv12I GWGCWC 1 cut(s) 1259
BbvI GCAGC 6 cut(s) 211, 780, 895, 1159, 1549, 1843
BceAI ACGGC 5 cut(s) 329, 884, 1217, 1753, 1784
BcgI CGANNNNNNTGC 2 cut(s) 1661, 1695
BciT130I CCWGG 8 cut(s) 406, 445, 666, 1223, 1400, 1433, 1721, 2054
BciVI GTATCC 4 cut(s) 409, 711, 1487, 1948
BcoDI GTCTC 5 cut(s) 177, 376, 1460, 2054, 2112
BfaI CTAG 6 cut(s) 476, 1038, 1055, 1109, 1295, 2024
BfmI CTRYAG 1 cut(s) 845
BfoI RGCGCY 2 cut(s) 794, 1640
BfuAI ACCTGC 1 cut(s) 1600
BfuI GTATCC 4 cut(s) 409, 711, 1487, 1948
BglII AGATCT 1 cut(s) 280
BlnI CCTAGG 2 cut(s) 475, 1037
Bme18I GGWCC 5 cut(s) 510, 648, 934, 1455, 1875
BmeRI GACNNNNNGTC 1 cut(s) 1435
BmeT110I CYCGRG 3 cut(s) 608, 778, 1756
BmgT120I GGNCC 7 cut(s) 510, 648, 934, 1455, 1525, 1766, 1875
BmrI ACTGGG 2 cut(s) 528, 1632
BmsI GCATC 3 cut(s) 100, 852, 1399
BmuI ACTGGG 2 cut(s) 528, 1632
BplI GAGNNNNNCTC 2 cut(s) 1241, 1273
BpmI CTGGAG 1 cut(s) 2075
Bpu10I CCTNAGC 3 cut(s) 178, 621, 737
BpuEI CTTGAG 1 cut(s) 982
BsaBI GATNNNNATC 1 cut(s) 2124
BsaHI GRCGYC 3 cut(s) 1425, 1678, 1941
BsaI GGTCTC 4 cut(s) 376, 1460, 2054, 2112
BsaWI WCCGGW 6 cut(s) 374, 468, 586, 721, 1154, 1804
Bse118I RCCGGY 6 cut(s) 468, 1154, 1574, 1674, 1727, 2099
Bse1I ACTGG 5 cut(s) 433, 523, 1627, 1711, 1944
Bse8I GATNNNNATC 1 cut(s) 2124
BseBI CCWGG 8 cut(s) 406, 445, 666, 1223, 1400, 1433, 1721, 2054
BseGI GGATG 5 cut(s) 396, 757, 867, 1372, 1720
BseJI GATNNNNATC 1 cut(s) 2124
BseMII CTCAG 2 cut(s) 192, 2123
BseNI ACTGG 5 cut(s) 433, 523, 1627, 1711, 1944
BseRI GAGGAG 4 cut(s) 1267, 1367, 1964, 1985
BseSI GKGCMC 1 cut(s) 1918
BseX3I CGGCCG 1 cut(s) 2013
BseXI GCAGC 6 cut(s) 211, 780, 895, 1159, 1549, 1843
BseYI CCCAGC 1 cut(s) 783
BsgI GTGCAG 3 cut(s) 779, 1400, 1556
Bsh1236I CGCG 4 cut(s) 164, 728, 975, 977
Bsh1285I CGRYCG 3 cut(s) 469, 1912, 2016
BshNI GGYRCC 7 cut(s) 58, 377, 471, 840, 1157, 1724, 2096
BshTI ACCGGT 2 cut(s) 468, 1154
BsiEI CGRYCG 3 cut(s) 469, 1912, 2016
BsiHKAI GWGCWC 1 cut(s) 1259
BsiHKCI CYCGRG 3 cut(s) 608, 778, 1756
BslFI GGGAC 3 cut(s) 221, 661, 947
BsmAI GTCTC 5 cut(s) 177, 376, 1460, 2054, 2112
BsmFI GGGAC 3 cut(s) 221, 661, 947
BsmI GAATGC 2 cut(s) 615, 901
Bso31I GGTCTC 4 cut(s) 376, 1460, 2054, 2112
BsoBI CYCGRG 3 cut(s) 608, 778, 1756
Bsp1286I GDGCHC 2 cut(s) 1259, 1918
Bsp68I TCGCGA 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 191, 2122
BspFNI CGCG 4 cut(s) 164, 728, 975, 977
BspMI ACCTGC 1 cut(s) 1600
BspPI GGATC 8 cut(s) 66, 430, 580, 1185, 1502, 1656, 1768, 1896
BspT107I GGYRCC 7 cut(s) 58, 377, 471, 840, 1157, 1724, 2096
BspTNI GGTCTC 4 cut(s) 376, 1460, 2054, 2112
BsrBI CCGCTC 1 cut(s) 2074
BsrFI RCCGGY 6 cut(s) 468, 1154, 1574, 1674, 1727, 2099
BsrI ACTGG 5 cut(s) 433, 523, 1627, 1711, 1944
BssAI RCCGGY 6 cut(s) 468, 1154, 1574, 1674, 1727, 2099
BssNI GRCGYC 3 cut(s) 1425, 1678, 1941
BssSI CACGAG 2 cut(s) 797, 1447
BssT1I CCWWGG 5 cut(s) 339, 475, 814, 1037, 1780
Bst2BI CACGAG 2 cut(s) 797, 1447
Bst2UI CCWGG 8 cut(s) 406, 445, 666, 1223, 1400, 1433, 1721, 2054
Bst6I CTCTTC 6 cut(s) 1205, 1322, 1458, 1615, 1652, 1730
BstACI GRCGYC 3 cut(s) 1425, 1678, 1941
BstC8I GCNNGC 5 cut(s) 450, 639, 944, 2086, 2101
BstDEI CTNAG 6 cut(s) 178, 621, 737, 746, 1815, 2109
BstEII GGTNACC 1 cut(s) 1024
BstENI CCTNNNNNAGG 2 cut(s) 442, 1967
BstF5I GGATG 5 cut(s) 396, 757, 867, 1372, 1720
BstFNI CGCG 4 cut(s) 164, 728, 975, 977
BstH2I RGCGCY 2 cut(s) 794, 1640
BstHHI GCGC 3 cut(s) 793, 977, 1639
BstMAI GTCTC 5 cut(s) 177, 376, 1460, 2054, 2112
BstMCI CGRYCG 3 cut(s) 469, 1912, 2016
BstMWI GCNNNNNNNGC 7 cut(s) 449, 773, 952, 1523, 1828, 1879, 1940
BstNI CCWGG 8 cut(s) 406, 445, 666, 1223, 1400, 1433, 1721, 2054
BstNSI RCATGY 2 cut(s) 703, 1390
BstPI GGTNACC 1 cut(s) 1024
BstSFI CTRYAG 1 cut(s) 845
BstSLI GKGCMC 1 cut(s) 1918
BstUI CGCG 4 cut(s) 164, 728, 975, 977
BstV1I GCAGC 6 cut(s) 211, 780, 895, 1159, 1549, 1843
BstX2I RGATCY 4 cut(s) 280, 572, 1661, 1888
BstYI RGATCY 4 cut(s) 280, 572, 1661, 1888
BstZI CGGCCG 1 cut(s) 2013
BsuI GTATCC 4 cut(s) 409, 711, 1487, 1948
BtgZI GCGATG 1 cut(s) 1644
BtsCI GGATG 5 cut(s) 396, 757, 867, 1372, 1720
BtsIMutI CAGTG 3 cut(s) 603, 1704, 1951
BtuMI TCGCGA 1 cut(s) 164
BveI ACCTGC 1 cut(s) 1600
Cac8I GCNNGC 5 cut(s) 450, 639, 944, 2086, 2101
CaiI CAGNNNCTG 1 cut(s) 1837
CfoI GCGC 3 cut(s) 793, 977, 1639
Cfr10I RCCGGY 6 cut(s) 468, 1154, 1574, 1674, 1727, 2099
Cfr13I GGNCC 7 cut(s) 510, 648, 934, 1455, 1525, 1766, 1875
Cfr9I CCCGGG 2 cut(s) 778, 1756
CseI GACGC 5 cut(s) 734, 1379, 1523, 1667, 1949
CspAI ACCGGT 2 cut(s) 468, 1154
CviAII CATG 5 cut(s) 676, 700, 1387, 1579, 1879
DdeI CTNAG 6 cut(s) 178, 621, 737, 746, 1815, 2109
DraIII CACNNNGTG 1 cut(s) 1534
DriI GACNNNNNGTC 1 cut(s) 1435
EaeI YGGCCR 5 cut(s) 600, 762, 1548, 1708, 2013
EagI CGGCCG 1 cut(s) 2013
Eam1104I CTCTTC 6 cut(s) 1205, 1322, 1458, 1615, 1652, 1730
Eam1105I GACNNNNNGTC 1 cut(s) 1435
EarI CTCTTC 6 cut(s) 1205, 1322, 1458, 1615, 1652, 1730
Ecl136II GAGCTC 1 cut(s) 1257
EclXI CGGCCG 1 cut(s) 2013
Eco130I CCWWGG 5 cut(s) 339, 475, 814, 1037, 1780
Eco24I GRGCYC 1 cut(s) 1259
Eco31I GGTCTC 4 cut(s) 376, 1460, 2054, 2112
Eco32I GATATC 1 cut(s) 1900
Eco47I GGWCC 5 cut(s) 510, 648, 934, 1455, 1875
Eco52I CGGCCG 1 cut(s) 2013
Eco53kI GAGCTC 1 cut(s) 1257
Eco57I CTGAAG 4 cut(s) 474, 728, 1913, 1985
Eco88I CYCGRG 3 cut(s) 608, 778, 1756
Eco91I GGTNACC 1 cut(s) 1024
EcoICRI GAGCTC 1 cut(s) 1257
EcoNI CCTNNNNNAGG 2 cut(s) 442, 1967
EcoO109I RGGNCCY 2 cut(s) 510, 934
EcoO65I GGTNACC 1 cut(s) 1024
EcoRII CCWGG 8 cut(s) 404, 443, 664, 1221, 1398, 1431, 1719, 2052
EcoRV GATATC 1 cut(s) 1900
EcoT14I CCWWGG 5 cut(s) 339, 475, 814, 1037, 1780
EcoT38I GRGCYC 1 cut(s) 1259
ErhI CCWWGG 5 cut(s) 339, 475, 814, 1037, 1780
FaeI CATG 5 cut(s) 679, 703, 1390, 1582, 1882
FalI AAGNNNNNCTT 2 cut(s) 1455, 1487
FaqI GGGAC 3 cut(s) 221, 661, 947
FatI CATG 5 cut(s) 675, 699, 1386, 1578, 1878
FauI CCCGC 6 cut(s) 1009, 1804, 2037, 2067, 2077, 2096
FblI GTMKAC 1 cut(s) 1428
FokI GGATG 5 cut(s) 403, 764, 874, 1379, 1727
FriOI GRGCYC 1 cut(s) 1259
FspBI CTAG 6 cut(s) 476, 1038, 1055, 1109, 1295, 2024
GlaI GCGC 3 cut(s) 792, 976, 1638
GsaI CCCAGC 1 cut(s) 787
GsuI CTGGAG 1 cut(s) 2075
HaeII RGCGCY 2 cut(s) 794, 1640
HgaI GACGC 5 cut(s) 734, 1379, 1523, 1667, 1949
HhaI GCGC 3 cut(s) 793, 977, 1639
Hin1I GRCGYC 3 cut(s) 1425, 1678, 1941
Hin1II CATG 5 cut(s) 679, 703, 1390, 1582, 1882
Hin6I GCGC 3 cut(s) 791, 975, 1637
HinP1I GCGC 3 cut(s) 791, 975, 1637
HincII GTYRAC 1 cut(s) 1429
HindII GTYRAC 1 cut(s) 1429
HinfI GANTC 7 cut(s) 42, 50, 395, 545, 802, 1266, 1450
HphI GGTGA 9 cut(s) 569, 867, 1036, 1511, 1661, 1708, 1745, 1952, 2135
Hpy166II GTNNAC 8 cut(s) 460, 487, 633, 697, 982, 1429, 1502, 1930
Hpy188I TCNGA 8 cut(s) 109, 400, 532, 550, 1198, 1243, 1893, 2112
Hpy188III TCNNGA 5 cut(s) 163, 180, 608, 1511, 2024
Hpy8I GTNNAC 8 cut(s) 460, 487, 633, 697, 982, 1429, 1502, 1930
HpyAV CCTTC 5 cut(s) 185, 679, 966, 1888, 1960
HpyCH4IV ACGT 3 cut(s) 629, 1425, 1554
HpyCH4V TGCA 5 cut(s) 199, 615, 796, 1417, 1537
HpyF10VI GCNNNNNNNGC 7 cut(s) 449, 773, 952, 1523, 1828, 1879, 1940
HpyF3I CTNAG 6 cut(s) 178, 621, 737, 746, 1815, 2109
HpySE526I ACGT 3 cut(s) 629, 1425, 1554
Hsp92I GRCGYC 3 cut(s) 1425, 1678, 1941
Hsp92II CATG 5 cut(s) 679, 703, 1390, 1582, 1882
HspAI GCGC 3 cut(s) 791, 975, 1637
KpnI GGTACC 4 cut(s) 62, 381, 475, 1161
KroI GCCGGC 1 cut(s) 2099
KroNI GCCGGC 1 cut(s) 2101
LmnI GCTCC 6 cut(s) 589, 813, 1254, 1314, 1522, 1626
Lsp1109I GCAGC 6 cut(s) 211, 780, 895, 1159, 1549, 1843
LweI GCATC 3 cut(s) 100, 852, 1399
MaeI CTAG 6 cut(s) 476, 1038, 1055, 1109, 1295, 2024
MaeII ACGT 3 cut(s) 629, 1425, 1554
MaeIII GTNAC 5 cut(s) 592, 873, 1024, 1057, 1696
MbiI CCGCTC 1 cut(s) 2074
MboII GAAGA 9 cut(s) 1222, 1339, 1418, 1475, 1602, 1666, 1669, 1747, 2077
MflI RGATCY 4 cut(s) 280, 572, 1661, 1888
MhlI GDGCHC 2 cut(s) 1259, 1918
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 7 cut(s) 125, 228, 384, 491, 1557, 1981, 2036
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 2 cut(s) 554, 1459
MmeI TCCRAC 3 cut(s) 96, 573, 1221
Mox20I TGGCCA 1 cut(s) 602
MroNI GCCGGC 1 cut(s) 2099
MscI TGGCCA 1 cut(s) 602
MseI TTAA 3 cut(s) 129, 1923, 1998
MslI CAYNNNNRTG 3 cut(s) 680, 1391, 1577
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 3 cut(s) 886, 1150, 1837
Mva1269I GAATGC 2 cut(s) 615, 901
MvaI CCWGG 8 cut(s) 406, 445, 666, 1223, 1400, 1433, 1721, 2054
MvnI CGCG 4 cut(s) 164, 728, 975, 977
MwoI GCNNNNNNNGC 7 cut(s) 449, 773, 952, 1523, 1828, 1879, 1940
NaeI GCCGGC 1 cut(s) 2101
NgoMIV GCCGGC 1 cut(s) 2099
NlaIII CATG 5 cut(s) 679, 703, 1390, 1582, 1882
NmeAIII GCCGAG 2 cut(s) 228, 290
NmuCI GTSAC 4 cut(s) 592, 873, 1024, 1696
NruI TCGCGA 1 cut(s) 164
NspI RCATGY 2 cut(s) 703, 1390
PcsI WCGNNNNNNNCGW 2 cut(s) 512, 1854
PctI GAATGC 2 cut(s) 615, 901
PdiI GCCGGC 1 cut(s) 2101
PfeI GAWTC 5 cut(s) 42, 50, 395, 802, 1266
PfoI TCCNGGA 1 cut(s) 2052
PinAI ACCGGT 2 cut(s) 468, 1154
PleI GAGTC 2 cut(s) 553, 1458
PpsI GAGTC 2 cut(s) 553, 1458
PpuMI RGGWCCY 2 cut(s) 510, 934
Psp124BI GAGCTC 1 cut(s) 1259
Psp5II RGGWCCY 2 cut(s) 510, 934
Psp6I CCWGG 8 cut(s) 404, 443, 664, 1221, 1398, 1431, 1719, 2052
PspEI GGTNACC 1 cut(s) 1024
PspFI CCCAGC 1 cut(s) 783
PspGI CCWGG 8 cut(s) 404, 443, 664, 1221, 1398, 1431, 1719, 2052
PspPI GGNCC 7 cut(s) 510, 648, 934, 1455, 1525, 1766, 1875
PspPPI RGGWCCY 2 cut(s) 510, 934
PstNI CAGNNNCTG 1 cut(s) 1837
PsuI RGATCY 4 cut(s) 280, 572, 1661, 1888
PvuII CAGCTG 2 cut(s) 886, 1150
RruI TCGCGA 1 cut(s) 164
RseI CAYNNNNRTG 3 cut(s) 680, 1391, 1577
SacI GAGCTC 1 cut(s) 1259
SalI GTCGAC 1 cut(s) 1427
SaqAI TTAA 3 cut(s) 129, 1923, 1998
Sau96I GGNCC 7 cut(s) 510, 648, 934, 1455, 1525, 1766, 1875
SchI GAGTC 2 cut(s) 554, 1459
SduI GDGCHC 2 cut(s) 1259, 1918
SfaNI GCATC 3 cut(s) 100, 852, 1399
SfcI CTRYAG 1 cut(s) 845
SgrAI CRCCGGYG 1 cut(s) 1674
SinI GGWCC 5 cut(s) 510, 648, 934, 1455, 1875
SmaI CCCGGG 2 cut(s) 780, 1758
SmiMI CAYNNNNRTG 3 cut(s) 680, 1391, 1577
SmlI CTYRAG 1 cut(s) 997
SmoI CTYRAG 1 cut(s) 997
Sse9I AATT 7 cut(s) 125, 228, 384, 491, 1557, 1981, 2036
SspMI CTAG 6 cut(s) 476, 1038, 1055, 1109, 1295, 2024
SstI GAGCTC 1 cut(s) 1259
StyI CCWWGG 5 cut(s) 339, 475, 814, 1037, 1780
TaiI ACGT 3 cut(s) 632, 1428, 1557
TaqII GACCGA 1 cut(s) 1443
TasI AATT 7 cut(s) 125, 228, 384, 491, 1557, 1981, 2036
TatI WGTACW 1 cut(s) 993
TauI GCSGC 6 cut(s) 706, 767, 1054, 1837, 2015, 2084
TfiI GAWTC 5 cut(s) 42, 50, 395, 802, 1266
Tru1I TTAA 3 cut(s) 129, 1923, 1998
Tru9I TTAA 3 cut(s) 129, 1923, 1998
TscAI CASTG 3 cut(s) 603, 1711, 1951
TseFI GTSAC 4 cut(s) 592, 873, 1024, 1696
TseI GCWGC 6 cut(s) 199, 793, 883, 1147, 1537, 1831
Tsp45I GTSAC 4 cut(s) 592, 873, 1024, 1696
TspDTI ATGAA 3 cut(s) 698, 1258, 1875
TspMI CCCGGG 2 cut(s) 778, 1756
TspRI CASTG 3 cut(s) 603, 1711, 1951
VpaK11BI GGWCC 5 cut(s) 510, 648, 934, 1455, 1875
XagI CCTNNNNNAGG 2 cut(s) 442, 1967
XapI RAATTY 2 cut(s) 125, 2036
XbaI TCTAGA 1 cut(s) 2023
XceI RCATGY 2 cut(s) 703, 1390
XmaI CCCGGG 2 cut(s) 778, 1756
XmaJI CCTAGG 2 cut(s) 475, 1037
XmiI GTMKAC 1 cut(s) 1428
XspI CTAG 6 cut(s) 476, 1038, 1055, 1109, 1295, 2024
ZraI GACGTC 1 cut(s) 1426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.