Rmu_sc0008232.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008232.1
OG0000087
Physical Location & Seq
Forward (+)
36359 .. 38011
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008232.1_g000010.1.cds

Sequence Viewer

Length: 1188 bp
atgggggtggagagagcttggctccgatacccgatccggtacccaatgggggtggagagagcttggctccgatacccaatggggtggagagagcttggctccgatacccgatggggtagaagatttggcttcgtggtacccgatgggcgatcctacggcagaggtcgtttcggtttcgacggtcctgatgcgttggagattgaatttaagagggaaactgactgttttccctcacttttcacgaaaaagaagctcgagagatttggaaggtttgcagcgaagagaaagggagaaccaagggagatttatatagcgagatttgaggtccccggtaccgtagttaggatggaatcaaaagccaggggtgggaatacgggatcgtcgtaccagtcttctgccaggcgagctgaaatggacatcgaccggtatctaggccgggtagaccaattagcggagaacacggggtcctcgactggggtgttctcggagagtagtggggagtccgacgagggtgagagcgagggtggatctacggaggccccggtagttacagtggccattcccgagggcattccgaagccgaggtacacacttgcggacgagaccgtatgcaatgaacctgggagaagcatgacgatgaaggagatggtagacatgcggctgaagtgggggatatcggacgcagtagagcttaggcctcttagggatggggatcttagggatggggagatggccgcgaatcctgccccggggtgggtggcgctgcatgagaatcagctccaccaagggttatcgctacccctgcgccggtgcctacagtatctgttgcggatgctgaacctgtcatcggggcagctaaccccgaatgtcgttcgccaaatatacagtatgatggccatgtgggacctgtgccagcaagggtggccttccataaatgagttccacgaggtacaccgggtactgtattctaggaagcggtcttgtgcgggtacggtgacctttgccgctagggattacgagccgctagttaccgatatgcctacttcgatgagcaaaaggtggaggaacaaagtgttcctagctggtgggcggtggcagataaaaaataagaagtggcagctgaccggtaccttccaagctatcggggccagtcctatacgctatccgaagtggaaaagaagaggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

395

Amino Acids

45.05

Weight (kDa)

9.66

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 4 cut(s) 39, 136, 332, 1127
AccB1I GGYRCC 5 cut(s) 39, 136, 332, 810, 1127
AccI GTMKAC 2 cut(s) 441, 651
AccII CGCG 1 cut(s) 737
AclWI GGATC 5 cut(s) 28, 144, 385, 535, 720
AcoI YGGCCR 3 cut(s) 555, 732, 894
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 683
AfaI GTAC 9 cut(s) 41, 138, 334, 386, 587, 951, 960, 991, 1129
AgeI ACCGGT 2 cut(s) 423, 1124
AgsI TTSAA 1 cut(s) 203
AjnI CCWGG 3 cut(s) 359, 398, 619
AloI GAACNNNNNNTCC 2 cut(s) 449, 481
Alw26I GTCTC 1 cut(s) 596
AlwI GGATC 5 cut(s) 28, 144, 385, 535, 720
AlwNI CAGNNNCTG 1 cut(s) 823
Ama87I CYCGRG 3 cut(s) 254, 563, 748
AoxI GGCC 8 cut(s) 433, 537, 555, 695, 732, 894, 923, 1146
ApeKI GCWGC 4 cut(s) 275, 763, 853, 1117
ApoI RAATTY 1 cut(s) 203
AsiGI ACCGGT 2 cut(s) 423, 1124
Asp718I GGTACC 4 cut(s) 39, 136, 332, 1127
AspLEI GCGC 2 cut(s) 763, 807
AspS9I GGNCC 6 cut(s) 182, 325, 465, 538, 904, 1146
AsuC2I CCSGG 6 cut(s) 330, 437, 542, 749, 750, 956
AsuHPI GGTGA 2 cut(s) 524, 1006
AvaI CYCGRG 3 cut(s) 254, 563, 748
AvaII GGWCC 4 cut(s) 182, 325, 465, 904
BaeI ACNNNNGTAYC 2 cut(s) 324, 357
BalI TGGCCA 2 cut(s) 557, 896
BanI GGYRCC 5 cut(s) 39, 136, 332, 810, 1127
BarI GAAGNNNNNNTAC 2 cut(s) 569, 601
BauI CACGAG 1 cut(s) 944
BbsI GAAGAC 1 cut(s) 384
BbvI GCAGC 4 cut(s) 287, 750, 865, 1129
BccI CCATC 8 cut(s) 105, 137, 340, 640, 701, 716, 724, 886
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 3 cut(s) 361, 400, 621
BcnI CCSGG 6 cut(s) 330, 437, 542, 749, 750, 956
BcoDI GTCTC 1 cut(s) 596
BfaI CTAG 5 cut(s) 431, 969, 1008, 1025, 1079
BfmI CTRYAG 1 cut(s) 815
BfoI RGCGCY 1 cut(s) 764
BisI GCNGC 8 cut(s) 276, 659, 735, 764, 854, 1005, 1022, 1118
BlsI GCNGC 8 cut(s) 277, 660, 736, 765, 855, 1006, 1023, 1119
Bme1390I CCNGG 9 cut(s) 330, 361, 400, 437, 542, 621, 749, 750, 956
Bme18I GGWCC 4 cut(s) 182, 325, 465, 904
BmeT110I CYCGRG 3 cut(s) 254, 563, 748
BmgT120I GGNCC 6 cut(s) 182, 325, 465, 538, 904, 1146
BmrFI CCNGG 9 cut(s) 330, 361, 400, 437, 542, 621, 749, 750, 956
BmrI ACTGGG 1 cut(s) 483
BmsI GCATC 2 cut(s) 178, 822
BmuI ACTGGG 1 cut(s) 483
BpiI GAAGAC 1 cut(s) 384
BplI GAGNNNNNCTC 5 cut(s) 38, 51, 83, 83, 115
Bpu10I CCTNAGC 1 cut(s) 692
BpuMI CCSGG 6 cut(s) 330, 437, 542, 749, 750, 956
BsaBI GATNNNNATC 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 596
BsaWI WCCGGW 3 cut(s) 36, 423, 1124
Bse118I RCCGGY 3 cut(s) 423, 807, 1124
Bse1I ACTGG 3 cut(s) 388, 478, 1149
Bse3DI GCAATG 1 cut(s) 619
Bse8I GATNNNNATC 1 cut(s) 711
BseBI CCWGG 3 cut(s) 361, 400, 621
BseGI GGATG 4 cut(s) 351, 712, 727, 837
BseJI GATNNNNATC 1 cut(s) 711
BseMI GCAATG 1 cut(s) 619
BseNI ACTGG 3 cut(s) 388, 478, 1149
BseXI GCAGC 4 cut(s) 287, 750, 865, 1129
Bsh1236I CGCG 1 cut(s) 737
Bsh1285I CGRYCG 1 cut(s) 424
BshFI GGCC 8 cut(s) 435, 539, 557, 697, 734, 896, 925, 1148
BshNI GGYRCC 5 cut(s) 39, 136, 332, 810, 1127
BshTI ACCGGT 2 cut(s) 423, 1124
BsiEI CGRYCG 1 cut(s) 424
BsiHKCI CYCGRG 3 cut(s) 254, 563, 748
BsiSI CCGG 9 cut(s) 37, 330, 424, 436, 542, 749, 808, 955, 1125
BslFI GGGAC 2 cut(s) 311, 917
BsmAI GTCTC 1 cut(s) 596
BsmFI GGGAC 2 cut(s) 311, 917
BsmI GAATGC 1 cut(s) 570
BsnI GGCC 8 cut(s) 435, 539, 557, 697, 734, 896, 925, 1148
Bso31I GGTCTC 1 cut(s) 596
BsoBI CYCGRG 3 cut(s) 254, 563, 748
Bsp143I GATC 5 cut(s) 33, 149, 377, 527, 712
BspANI GGCC 8 cut(s) 435, 539, 557, 697, 734, 896, 925, 1148
BspFNI CGCG 1 cut(s) 737
BspPI GGATC 5 cut(s) 28, 144, 385, 535, 720
BspT107I GGYRCC 5 cut(s) 39, 136, 332, 810, 1127
BspTNI GGTCTC 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 619
BsrFI RCCGGY 3 cut(s) 423, 807, 1124
BsrI ACTGG 3 cut(s) 388, 478, 1149
BssAI RCCGGY 3 cut(s) 423, 807, 1124
BssMI GATC 5 cut(s) 33, 149, 377, 527, 712
BssSI CACGAG 1 cut(s) 944
BssT1I CCWWGG 2 cut(s) 296, 784
Bst2BI CACGAG 1 cut(s) 944
Bst2UI CCWGG 3 cut(s) 361, 400, 621
Bst4CI ACNGT 9 cut(s) 182, 224, 337, 553, 607, 819, 887, 963, 994
Bst6I CTCTTC 2 cut(s) 275, 1174
BstC8I GCNNGC 2 cut(s) 405, 914
BstDEI CTNAG 3 cut(s) 692, 701, 716
BstEII GGTNACC 1 cut(s) 994
BstF5I GGATG 4 cut(s) 351, 712, 727, 837
BstFNI CGCG 1 cut(s) 737
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 2 cut(s) 763, 807
BstKTI GATC 5 cut(s) 36, 152, 380, 530, 715
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 5 cut(s) 33, 149, 377, 527, 712
BstMCI CGRYCG 1 cut(s) 424
BstMWI GCNNNNNNNGC 5 cut(s) 404, 743, 802, 922, 1145
BstNI CCWGG 3 cut(s) 361, 400, 621
BstNSI RCATGY 1 cut(s) 658
BstPI GGTNACC 1 cut(s) 994
BstSCI CCNGG 9 cut(s) 328, 359, 398, 435, 540, 619, 747, 748, 954
BstSFI CTRYAG 1 cut(s) 815
BstUI CGCG 1 cut(s) 737
BstV1I GCAGC 4 cut(s) 287, 750, 865, 1129
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 2 cut(s) 527, 712
BstXI CCANNNNNNTGG 1 cut(s) 84
BstYI RGATCY 2 cut(s) 527, 712
BsuRI GGCC 8 cut(s) 435, 539, 557, 697, 734, 896, 925, 1148
BtsCI GGATG 4 cut(s) 351, 712, 727, 837
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 2 cut(s) 405, 914
CaiI CAGNNNCTG 1 cut(s) 823
CfoI GCGC 2 cut(s) 763, 807
Cfr10I RCCGGY 3 cut(s) 423, 807, 1124
Cfr13I GGNCC 6 cut(s) 182, 325, 465, 538, 904, 1146
Cfr9I CCCGGG 1 cut(s) 748
CseI GACGC 1 cut(s) 689
Csp6I GTAC 9 cut(s) 40, 137, 333, 385, 586, 950, 959, 990, 1128
CspAI ACCGGT 2 cut(s) 423, 1124
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviAII CATG 4 cut(s) 631, 655, 767, 898
CviQI GTAC 9 cut(s) 40, 137, 333, 385, 586, 950, 959, 990, 1128
DdeI CTNAG 3 cut(s) 692, 701, 716
DpnI GATC 5 cut(s) 35, 151, 379, 529, 714
DpnII GATC 5 cut(s) 33, 149, 377, 527, 712
EaeI YGGCCR 3 cut(s) 555, 732, 894
Eam1104I CTCTTC 2 cut(s) 275, 1174
EarI CTCTTC 2 cut(s) 275, 1174
Eco130I CCWWGG 2 cut(s) 296, 784
Eco147I AGGCCT 1 cut(s) 697
Eco31I GGTCTC 1 cut(s) 596
Eco32I GATATC 1 cut(s) 675
Eco47I GGWCC 4 cut(s) 182, 325, 465, 904
Eco57I CTGAAG 1 cut(s) 683
Eco88I CYCGRG 3 cut(s) 254, 563, 748
Eco91I GGTNACC 1 cut(s) 994
EcoO109I RGGNCCY 4 cut(s) 325, 465, 538, 904
EcoO65I GGTNACC 1 cut(s) 994
EcoRII CCWGG 3 cut(s) 359, 398, 619
EcoRV GATATC 1 cut(s) 675
EcoT14I CCWWGG 2 cut(s) 296, 784
ErhI CCWWGG 2 cut(s) 296, 784
FaeI CATG 4 cut(s) 634, 658, 770, 901
FaqI GGGAC 2 cut(s) 311, 917
FatI CATG 4 cut(s) 630, 654, 766, 897
FauI CCCGC 1 cut(s) 979
FblI GTMKAC 2 cut(s) 441, 651
Fnu4HI GCNGC 8 cut(s) 276, 659, 735, 764, 854, 1005, 1022, 1118
FokI GGATG 4 cut(s) 358, 719, 734, 844
Fsp4HI GCNGC 8 cut(s) 276, 659, 735, 764, 854, 1005, 1022, 1118
FspBI CTAG 5 cut(s) 431, 969, 1008, 1025, 1079
GlaI GCGC 2 cut(s) 762, 806
GluI GCNGC 8 cut(s) 276, 659, 735, 764, 854, 1005, 1022, 1118
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 8 cut(s) 435, 539, 557, 697, 734, 896, 925, 1148
HapII CCGG 9 cut(s) 37, 330, 424, 436, 542, 749, 808, 955, 1125
HgaI GACGC 1 cut(s) 689
HhaI GCGC 2 cut(s) 763, 807
Hin1II CATG 4 cut(s) 634, 658, 770, 901
Hin6I GCGC 2 cut(s) 761, 805
HinP1I GCGC 2 cut(s) 761, 805
HinfI GANTC 4 cut(s) 350, 500, 739, 772
HpaII CCGG 9 cut(s) 37, 330, 424, 436, 542, 749, 808, 955, 1125
HphI GGTGA 2 cut(s) 524, 1006
Hpy166II GTNNAC 4 cut(s) 442, 588, 652, 952
Hpy188I TCNGA 8 cut(s) 26, 71, 103, 487, 505, 576, 679, 1167
Hpy188III TCNNGA 4 cut(s) 185, 241, 256, 563
Hpy8I GTNNAC 4 cut(s) 442, 588, 652, 952
Hpy99I CGWCG 3 cut(s) 182, 385, 509
HpyAV CCTTC 4 cut(s) 261, 634, 936, 1141
HpyCH4III ACNGT 9 cut(s) 182, 224, 337, 553, 607, 819, 887, 963, 994
HpyCH4V TGCA 3 cut(s) 275, 612, 766
HpyF10VI GCNNNNNNNGC 5 cut(s) 404, 743, 802, 922, 1145
HpyF3I CTNAG 3 cut(s) 692, 701, 716
Hsp92II CATG 4 cut(s) 634, 658, 770, 901
HspAI GCGC 2 cut(s) 761, 805
KpnI GGTACC 4 cut(s) 43, 140, 336, 1131
Kzo9I GATC 5 cut(s) 33, 149, 377, 527, 712
LmnI GCTCC 4 cut(s) 27, 72, 104, 783
Lsp1109I GCAGC 4 cut(s) 287, 750, 865, 1129
LweI GCATC 2 cut(s) 178, 822
MaeI CTAG 5 cut(s) 431, 969, 1008, 1025, 1079
MaeIII GTNAC 3 cut(s) 547, 994, 1027
MalI GATC 5 cut(s) 35, 151, 379, 529, 714
MboI GATC 5 cut(s) 33, 149, 377, 527, 712
MboII GAAGA 3 cut(s) 132, 292, 384
MflI RGATCY 2 cut(s) 527, 712
MlsI TGGCCA 2 cut(s) 557, 896
MluCI AATT 2 cut(s) 203, 446
MluNI TGGCCA 2 cut(s) 557, 896
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 2 cut(s) 174, 528
Mox20I TGGCCA 2 cut(s) 557, 896
MscI TGGCCA 2 cut(s) 557, 896
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 635
Msp20I TGGCCA 2 cut(s) 557, 896
MspA1I CMGCKG 1 cut(s) 1120
MspI CCGG 9 cut(s) 37, 330, 424, 436, 542, 749, 808, 955, 1125
MspR9I CCNGG 9 cut(s) 330, 361, 400, 437, 542, 621, 749, 750, 956
Mva1269I GAATGC 1 cut(s) 570
MvaI CCWGG 3 cut(s) 361, 400, 621
MvnI CGCG 1 cut(s) 737
MwoI GCNNNNNNNGC 5 cut(s) 404, 743, 802, 922, 1145
NciI CCSGG 6 cut(s) 330, 437, 542, 749, 750, 956
NdeII GATC 5 cut(s) 33, 149, 377, 527, 712
NlaIII CATG 4 cut(s) 634, 658, 770, 901
NmeAIII GCCGAG 1 cut(s) 606
NmuCI GTSAC 1 cut(s) 994
NspI RCATGY 1 cut(s) 658
PaeR7I CTCGAG 1 cut(s) 254
PceI AGGCCT 1 cut(s) 697
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 380, 467
PctI GAATGC 1 cut(s) 570
PfeI GAWTC 3 cut(s) 350, 739, 772
PinAI ACCGGT 2 cut(s) 423, 1124
PkrI GCNGC 8 cut(s) 277, 660, 736, 765, 855, 1006, 1023, 1119
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PpuMI RGGWCCY 3 cut(s) 325, 465, 904
Psp5II RGGWCCY 3 cut(s) 325, 465, 904
Psp6I CCWGG 3 cut(s) 359, 398, 619
PspEI GGTNACC 1 cut(s) 994
PspGI CCWGG 3 cut(s) 359, 398, 619
PspPI GGNCC 6 cut(s) 182, 325, 465, 538, 904, 1146
PspPPI RGGWCCY 3 cut(s) 325, 465, 904
PstNI CAGNNNCTG 1 cut(s) 823
PsuI RGATCY 2 cut(s) 527, 712
PvuII CAGCTG 1 cut(s) 1120
RsaI GTAC 9 cut(s) 41, 138, 334, 386, 587, 951, 960, 991, 1129
RsaNI GTAC 9 cut(s) 40, 137, 333, 385, 586, 950, 959, 990, 1128
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 8 cut(s) 276, 659, 735, 764, 854, 1005, 1022, 1118
Sau3AI GATC 5 cut(s) 33, 149, 377, 527, 712
Sau96I GGNCC 6 cut(s) 182, 325, 465, 538, 904, 1146
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 9 cut(s) 330, 361, 400, 437, 542, 621, 749, 750, 956
SfaNI GCATC 2 cut(s) 178, 822
SfcI CTRYAG 1 cut(s) 815
Sfr274I CTCGAG 1 cut(s) 254
SgrAI CRCCGGYG 1 cut(s) 807
SinI GGWCC 4 cut(s) 182, 325, 465, 904
SlaI CTCGAG 1 cut(s) 254
SmaI CCCGGG 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 203, 446
SseBI AGGCCT 1 cut(s) 697
SspMI CTAG 5 cut(s) 431, 969, 1008, 1025, 1079
StuI AGGCCT 1 cut(s) 697
StyD4I CCNGG 9 cut(s) 328, 359, 398, 435, 540, 619, 747, 748, 954
StyI CCWWGG 2 cut(s) 296, 784
TaaI ACNGT 9 cut(s) 182, 224, 337, 553, 607, 819, 887, 963, 994
TaqI TCGA 5 cut(s) 177, 255, 420, 470, 1046
TasI AATT 2 cut(s) 203, 446
TauI GCSGC 4 cut(s) 661, 737, 1007, 1024
TfiI GAWTC 3 cut(s) 350, 739, 772
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 558
TseFI GTSAC 1 cut(s) 994
TseI GCWGC 4 cut(s) 275, 763, 853, 1117
Tsp45I GTSAC 1 cut(s) 994
TspDTI ATGAA 2 cut(s) 630, 653
TspGWI ACGGA 1 cut(s) 548
TspMI CCCGGG 1 cut(s) 748
TspRI CASTG 1 cut(s) 558
VpaK11BI GGWCC 4 cut(s) 182, 325, 465, 904
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 658
XhoI CTCGAG 1 cut(s) 254
XmaI CCCGGG 1 cut(s) 748
XmiI GTMKAC 2 cut(s) 441, 651
XspI CTAG 5 cut(s) 431, 969, 1008, 1025, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.