Rmu_sc0001611.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001611.1
OG0000087
Physical Location & Seq
Forward (+)
20832 .. 24736
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001611.1_g000003.1.cds

Sequence Viewer

Length: 2562 bp
atgtgggacacaggttcttctgatgtcatatcagcccttttgttgtgtatagatgggctgtgctggccttgccccaggccctgggtgcccggggtagcatctcatgtgaggcctgccatggtgggtcgtgaacccggcccatggcgtggtacctgggagtaccgatggggctcagccgctagtgctaaacttagtaagccacctactccctgggacaggatgagggttgagtccctggtaccggatggggtggagagaggacctgggtttgatacccgatggggtagaaaatttgagccttcggtaccgaatggggtaaagagagggcttggctctgatacccgatggggtagaaaatttgtgcctccggtacccaatggggtagagagagggcttggctctgatactcgatgggatagaaaatttgagcctccgactgggttgtgcaataaatgcccgtcctttctcctgccaaagctcgagaaatggggagaggcgtgggacacgtgtagcgatcctatggttgagggcttttcggtttcgatggccctgatgcattggagattaaatttaagagggaaactgattgttttccctcactttcgtgaaaacaaactcagaagacttcgaagatttgcagcggtgaaaaaggggagagccaagggagaagtgatggaatcagaagccagggggggggatacaggatcgtcgtaccagtcttctgccaagcaagctgaagtggatatcgatcggtacttaggccgagtagatcaattagcagagaacacgggatcctcgactggggtgttctcggagatcagtgaggagtccaacgagggtgagagcgagggtggatctgcggaggccccggtagtcacggtggcaattcccgagggcataccgaagcctaggtatgcacttgcggacgggaccggatggagagcttgccgcgaatcctgccccggggtgggtggcgctgcacgagaaacagttccaccaagggttatcgctaccgctgacccggtgcctacagtatctgttgcggatgctgaacctgtcaccggggcagttgaccctgaatgccattcctcaaatatacaggtcctgtactcaaggaagttgtcttgtgcgggtacggttacgtttgccgctagggattacgaaccactagttaccgacatgccttcctcgatgagcaaaaggtggaggaacaaagtattcctagctggggggcggtggcaaattaaaaataagaagtggcagctgaccggtaccttccaagcgagcggggaccagtcctatactctatctgaagtcgaaaggaagaggatagcccggatatatgccgtttggtcagagaaagataggagctcttatagattcatccggcactctatactttataggctagggctagggtggctccccgtgaaagcgccgaagaggaaaccccggaaaggcaaagaggaagacagaatggatgatgctcagttgatggatatgctgatgggccagagggaagacgcccttcacatcgatgtcgagctagggtcgaaaggtacgagtcggtccgttgaagagaccctactggagatcaccgatgagggatatggggaacctgatcctgacgctcccgtgacccaagtcgtgcagccctctgttgccgatgtcatcacgatagatgataccggggcggggaaggtaccggtccccgtgtctatttcctctcgctccgctgggagcgatgaggcattgctgcctggtgagaagaaaagatcccataggcaccggcatcgaagtgataagcaggaggtgacgtatactggcggggatgttcagggtttcggttcgaagagacagaagaaagatcacccgggaccagagtcgtcgccttcgcttggcttattgtctcctgcccttccggtgatccccaagaagcccatcaagcagctgttgagtgagtacggggttgccgatgaaaagttcgtgcggtccatgcttggtgacctgaaggacattgacctcgaccgggcactcttcaatgtgtacgcgattgacgccagcgaggaagatactcatctgaaggaggaggttagcaatctctccgggcaggtgaagtatctccatggcgagaaggccaagctggagaaggagcgagactcattgaaggctgagatggccgcagctaagcagcggatcgcggagcttgagggtgaagtctctgaggcgcgggaagaggtgaaaaacactcgggactctgagaaaaaagctgcagagtctgccgtgtcatggaaggagaaggcggactccctggaggatcgccttcccgcggagaggcacgaggccgtggaagagtacaagtcctccgaagagctcatcgctatgctaactgctgctcaagataaggctgtcatcatgaagttcaaggagtgggtggcggccggatacctggatgagactaaattcaggaggggtctccttgagaagaagaagaaagattgggaggcggcgaccaagtctcgtgccggtgggtcccagagtaccggtggcgagcagttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

853

Amino Acids

94.36

Weight (kDa)

7.55

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2101
Acc36I ACCTGC 1 cut(s) 2101
Acc65I GGTACC 6 cut(s) 149, 238, 304, 370, 1271, 1702
AccB1I GGYRCC 9 cut(s) 85, 149, 238, 304, 370, 1024, 1271, 1702, 1785
AccB7I CCANNNNNTGG 2 cut(s) 81, 146
AccBSI CCGCTC 1 cut(s) 1287
AccI GTMKAC 1 cut(s) 1820
AccII CGCG 5 cut(s) 951, 2051, 2201, 2230, 2330
AcoI YGGCCR 2 cut(s) 2178, 2439
AcsI RAATTY 5 cut(s) 290, 356, 422, 568, 2462
AcuI CTGAAG 4 cut(s) 756, 1332, 2030, 2102
AcvI CACGTG 1 cut(s) 507
AcyI GRCGYC 2 cut(s) 1524, 2058
AflIII ACRYGT 2 cut(s) 504, 506
AgeI ACCGGT 3 cut(s) 1268, 1705, 2543
AgsI TTSAA 4 cut(s) 1577, 2041, 2167, 2425
AhlI ACTAGT 1 cut(s) 1168
AleI CACNNNNGTG 1 cut(s) 603
AloI GAACNNNNNNTCC 2 cut(s) 776, 808
Alw21I GWGCWC 2 cut(s) 1373, 2376
Alw26I GTCTC 8 cut(s) 1574, 1849, 1914, 2151, 2224, 2450, 2480, 2523
AlwNI CAGNNNCTG 4 cut(s) 81, 1037, 1105, 2279
Ama87I CYCGRG 6 cut(s) 89, 479, 890, 962, 1873, 2250
ApoI RAATTY 5 cut(s) 290, 356, 422, 568, 2462
AsiGI ACCGGT 3 cut(s) 1268, 1705, 2543
Asp700I GAANNNNTTC 1 cut(s) 990
Asp718I GGTACC 6 cut(s) 149, 238, 304, 370, 1271, 1702
AspA2I CCTAGG 1 cut(s) 908
AspLEI GCGC 3 cut(s) 977, 1438, 2230
AsuII TTCGAA 2 cut(s) 628, 1850
AvaI CYCGRG 6 cut(s) 89, 479, 890, 962, 1873, 2250
AvaII GGWCC 9 cut(s) 260, 930, 1102, 1291, 1569, 1708, 1877, 1992, 2532
AvrII CCTAGG 1 cut(s) 908
BaeGI GKGCMC 2 cut(s) 90, 2035
BamHI GGATCC 1 cut(s) 791
BanI GGYRCC 9 cut(s) 85, 149, 238, 304, 370, 1024, 1271, 1702, 1785
BanII GRGCYC 3 cut(s) 173, 1373, 2376
BarI GAAGNNNNNNTAC 2 cut(s) 1569, 1601
BauI CACGAG 3 cut(s) 981, 2339, 2520
BbrPI CACGTG 1 cut(s) 507
BbsI GAAGAC 4 cut(s) 628, 711, 1476, 1527
Bbv12I GWGCWC 2 cut(s) 1373, 2376
BceAI ACGGC 3 cut(s) 1331, 2267, 2330
BcgI CGANNNNNNTGC 2 cut(s) 1775, 1809
BciVI GTATCC 2 cut(s) 691, 2438
BcoDI GTCTC 8 cut(s) 1574, 1849, 1914, 2151, 2224, 2450, 2480, 2523
BcuI ACTAGT 1 cut(s) 1168
BfaI CTAG 8 cut(s) 180, 909, 1152, 1169, 1223, 1409, 1415, 1547
BfmI CTRYAG 2 cut(s) 1029, 2271
BfoI RGCGCY 2 cut(s) 978, 1439
BfuAI ACCTGC 1 cut(s) 2101
BfuI GTATCC 2 cut(s) 691, 2438
BlnI CCTAGG 1 cut(s) 908
BlpI GCTNAGC 2 cut(s) 172, 2187
Bme18I GGWCC 9 cut(s) 260, 930, 1102, 1291, 1569, 1708, 1877, 1992, 2532
BmeT110I CYCGRG 6 cut(s) 89, 479, 890, 962, 1873, 2250
BmrI ACTGGG 2 cut(s) 447, 810
BmsI GCATC 5 cut(s) 107, 543, 1036, 1474, 1801
BmuI ACTGGG 2 cut(s) 447, 810
BoxI GACNNNNGTC 2 cut(s) 1643, 1882
BpiI GAAGAC 4 cut(s) 628, 711, 1476, 1527
BplI GAGNNNNNCTC 2 cut(s) 2144, 2176
BpmI CTGGAG 3 cut(s) 1610, 2165, 2333
Bpu1102I GCTNAGC 2 cut(s) 172, 2187
Bpu14I TTCGAA 2 cut(s) 628, 1850
BpuEI CTTGAG 4 cut(s) 1096, 2228, 2382, 2501
Bsa29I ATCGAT 2 cut(s) 747, 1536
BsaAI YACGTR 1 cut(s) 507
BsaBI GATNNNNATC 2 cut(s) 747, 2076
BsaHI GRCGYC 2 cut(s) 1524, 2058
BsaI GGTCTC 2 cut(s) 1574, 2480
BsaWI WCCGGW 7 cut(s) 241, 367, 932, 1268, 1705, 1921, 2543
BsaXI ACNNNNNCTCC 4 cut(s) 1802, 1832, 2348, 2378
Bse118I RCCGGY 5 cut(s) 1268, 1705, 1788, 2525, 2543
Bse1I ACTGG 6 cut(s) 442, 715, 805, 1294, 1593, 1828
Bse3DI GCAATG 1 cut(s) 1751
Bse8I GATNNNNATC 2 cut(s) 747, 2076
BseCI ATCGAT 2 cut(s) 747, 1536
BseGI GGATG 8 cut(s) 225, 250, 941, 1051, 1383, 1486, 1837, 2458
BseJI GATNNNNATC 2 cut(s) 747, 2076
BseMI GCAATG 1 cut(s) 1751
BseMII CTCAG 6 cut(s) 186, 631, 1502, 2163, 2214, 2250
BseNI ACTGG 6 cut(s) 442, 715, 805, 1294, 1593, 1828
BseRI GAGGAG 2 cut(s) 839, 2102
BseSI GKGCMC 2 cut(s) 90, 2035
BseX3I CGGCCG 1 cut(s) 2439
BseYI CCCAGC 2 cut(s) 1226, 1736
BsgI GTGCAG 2 cut(s) 963, 1670
Bsh1236I CGCG 5 cut(s) 951, 2051, 2201, 2230, 2330
Bsh1285I CGRYCG 3 cut(s) 751, 2029, 2442
BshNI GGYRCC 9 cut(s) 85, 149, 238, 304, 370, 1024, 1271, 1702, 1785
BshTI ACCGGT 3 cut(s) 1268, 1705, 2543
BshVI ATCGAT 2 cut(s) 747, 1536
BsiEI CGRYCG 3 cut(s) 751, 2029, 2442
BsiHKAI GWGCWC 2 cut(s) 1373, 2376
BsiHKCI CYCGRG 6 cut(s) 89, 479, 890, 962, 1873, 2250
BsmAI GTCTC 8 cut(s) 1574, 1849, 1914, 2151, 2224, 2450, 2480, 2523
BsmI GAATGC 1 cut(s) 1085
Bso31I GGTCTC 2 cut(s) 1574, 2480
BsoBI CYCGRG 6 cut(s) 89, 479, 890, 962, 1873, 2250
Bsp119I TTCGAA 2 cut(s) 628, 1850
Bsp1286I GDGCHC 5 cut(s) 90, 173, 1373, 2035, 2376
Bsp1720I GCTNAGC 2 cut(s) 172, 2187
Bsp19I CCATGG 3 cut(s) 117, 140, 2125
BspCNI CTCAG 6 cut(s) 185, 630, 1501, 2164, 2215, 2251
BspDI ATCGAT 2 cut(s) 747, 1536
BspFNI CGCG 5 cut(s) 951, 2051, 2201, 2230, 2330
BspHI TCATGA 1 cut(s) 2415
BspMAI CTGCAG 1 cut(s) 2275
BspMI ACCTGC 1 cut(s) 2101
BspQI GCTCTTC 1 cut(s) 2364
BspT104I TTCGAA 2 cut(s) 628, 1850
BspT107I GGYRCC 9 cut(s) 85, 149, 238, 304, 370, 1024, 1271, 1702, 1785
BspTNI GGTCTC 2 cut(s) 1574, 2480
BsrBI CCGCTC 1 cut(s) 1287
BsrDI GCAATG 1 cut(s) 1751
BsrFI RCCGGY 5 cut(s) 1268, 1705, 1788, 2525, 2543
BsrI ACTGG 6 cut(s) 442, 715, 805, 1294, 1593, 1828
BssAI RCCGGY 5 cut(s) 1268, 1705, 1788, 2525, 2543
BssNAI GTATAC 1 cut(s) 1821
BssNI GRCGYC 2 cut(s) 1524, 2058
BssSI CACGAG 3 cut(s) 981, 2339, 2520
BssT1I CCWWGG 6 cut(s) 117, 140, 660, 908, 998, 2125
Bst1107I GTATAC 1 cut(s) 1821
Bst2BI CACGAG 3 cut(s) 981, 2339, 2520
Bst4CI ACNGT 4 cut(s) 880, 991, 1033, 1138
Bst6I CTCTTC 8 cut(s) 1319, 1436, 1572, 1847, 2042, 2229, 2346, 2364
BstACI GRCGYC 2 cut(s) 1524, 2058
BstAPI GCANNNNNTGC 2 cut(s) 453, 2279
BstBAI YACGTR 1 cut(s) 507
BstBI TTCGAA 2 cut(s) 628, 1850
BstC8I GCNNGC 7 cut(s) 65, 114, 732, 946, 1285, 2062, 2552
BstDEI CTNAG 9 cut(s) 172, 191, 617, 757, 1488, 2172, 2187, 2223, 2259
BstDSI CCRYGG 5 cut(s) 117, 140, 2125, 2328, 2346
BstEII GGTNACC 1 cut(s) 2003
BstENI CCTNNNNNAGG 1 cut(s) 214
BstF5I GGATG 8 cut(s) 225, 250, 941, 1051, 1383, 1486, 1837, 2458
BstFNI CGCG 5 cut(s) 951, 2051, 2201, 2230, 2330
BstH2I RGCGCY 2 cut(s) 978, 1439
BstHHI GCGC 3 cut(s) 977, 1438, 2230
BstMAI GTCTC 8 cut(s) 1574, 1849, 1914, 2151, 2224, 2450, 2480, 2523
BstMCI CGRYCG 3 cut(s) 751, 2029, 2442
BstNSI RCATGY 1 cut(s) 1183
BstPAI GACNNNNGTC 2 cut(s) 1643, 1882
BstPI GGTNACC 1 cut(s) 2003
BstSFI CTRYAG 2 cut(s) 1029, 2271
BstSLI GKGCMC 2 cut(s) 90, 2035
BstUI CGCG 5 cut(s) 951, 2051, 2201, 2230, 2330
BstV2I GAAGAC 4 cut(s) 628, 711, 1476, 1527
BstX2I RGATCY 3 cut(s) 791, 854, 1775
BstYI RGATCY 3 cut(s) 791, 854, 1775
BstZ17I GTATAC 1 cut(s) 1821
BstZI CGGCCG 1 cut(s) 2439
Bsu15I ATCGAT 2 cut(s) 747, 1536
BsuI GTATCC 2 cut(s) 691, 2438
BsuTUI ATCGAT 2 cut(s) 747, 1536
BtgI CCRYGG 5 cut(s) 117, 140, 2125, 2328, 2346
BtgZI GCGATG 2 cut(s) 1758, 2362
BtsCI GGATG 8 cut(s) 225, 250, 941, 1051, 1383, 1486, 1837, 2458
BtsIMutI CAGTG 1 cut(s) 826
BveI ACCTGC 1 cut(s) 2101
Cac8I GCNNGC 7 cut(s) 65, 114, 732, 946, 1285, 2062, 2552
CaiI CAGNNNCTG 4 cut(s) 81, 1037, 1105, 2279
CciI TCATGA 1 cut(s) 2415
CfoI GCGC 3 cut(s) 977, 1438, 2230
Cfr10I RCCGGY 5 cut(s) 1268, 1705, 1788, 2525, 2543
Cfr42I CCGCGG 1 cut(s) 2331
Cfr9I CCCGGG 3 cut(s) 89, 962, 1873
ClaI ATCGAT 2 cut(s) 747, 1536
CpoI CGGWCCG 1 cut(s) 1569
CseI GACGC 3 cut(s) 1532, 1637, 2066
CspAI ACCGGT 3 cut(s) 1268, 1705, 2543
CspI CGGWCCG 1 cut(s) 1569
CviAII CATG 8 cut(s) 104, 118, 141, 1180, 1996, 2126, 2289, 2416
DdeI CTNAG 9 cut(s) 172, 191, 617, 757, 1488, 2172, 2187, 2223, 2259
EaeI YGGCCR 2 cut(s) 2178, 2439
EagI CGGCCG 1 cut(s) 2439
Eam1104I CTCTTC 8 cut(s) 1319, 1436, 1572, 1847, 2042, 2229, 2346, 2364
EarI CTCTTC 8 cut(s) 1319, 1436, 1572, 1847, 2042, 2229, 2346, 2364
EciI GGCGGA 1 cut(s) 2318
Ecl136II GAGCTC 2 cut(s) 1371, 2374
EclXI CGGCCG 1 cut(s) 2439
Eco130I CCWWGG 6 cut(s) 117, 140, 660, 908, 998, 2125
Eco147I AGGCCT 1 cut(s) 112
Eco24I GRGCYC 3 cut(s) 173, 1373, 2376
Eco31I GGTCTC 2 cut(s) 1574, 2480
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 9 cut(s) 260, 930, 1102, 1291, 1569, 1708, 1877, 1992, 2532
Eco52I CGGCCG 1 cut(s) 2439
Eco53kI GAGCTC 2 cut(s) 1371, 2374
Eco57I CTGAAG 4 cut(s) 756, 1332, 2030, 2102
Eco72I CACGTG 1 cut(s) 507
Eco88I CYCGRG 6 cut(s) 89, 479, 890, 962, 1873, 2250
Eco91I GGTNACC 1 cut(s) 2003
EcoICRI GAGCTC 2 cut(s) 1371, 2374
EcoNI CCTNNNNNAGG 1 cut(s) 214
EcoO109I RGGNCCY 5 cut(s) 78, 260, 865, 1102, 2532
EcoO65I GGTNACC 1 cut(s) 2003
EcoRV GATATC 1 cut(s) 745
EcoT14I CCWWGG 6 cut(s) 117, 140, 660, 908, 998, 2125
EcoT22I ATGCAT 1 cut(s) 558
EcoT38I GRGCYC 3 cut(s) 173, 1373, 2376
ErhI CCWWGG 6 cut(s) 117, 140, 660, 908, 998, 2125
FaeI CATG 8 cut(s) 107, 121, 144, 1183, 1999, 2129, 2292, 2419
FalI AAGNNNNNCTT 2 cut(s) 1512, 1544
FatI CATG 8 cut(s) 103, 117, 140, 1179, 1995, 2125, 2288, 2415
FauI CCCGC 6 cut(s) 1123, 1280, 1687, 1820, 2223, 2335
FblI GTMKAC 1 cut(s) 1820
FokI GGATG 8 cut(s) 232, 257, 948, 1058, 1370, 1493, 1844, 2465
FriOI GRGCYC 3 cut(s) 173, 1373, 2376
FspBI CTAG 8 cut(s) 180, 909, 1152, 1169, 1223, 1409, 1415, 1547
GlaI GCGC 3 cut(s) 976, 1437, 2229
GsaI CCCAGC 2 cut(s) 1230, 1740
GsuI CTGGAG 3 cut(s) 1610, 2165, 2333
HaeII RGCGCY 2 cut(s) 978, 1439
HgaI GACGC 3 cut(s) 1532, 1637, 2066
HhaI GCGC 3 cut(s) 977, 1438, 2230
Hin1I GRCGYC 2 cut(s) 1524, 2058
Hin1II CATG 8 cut(s) 107, 121, 144, 1183, 1999, 2129, 2292, 2419
Hin6I GCGC 3 cut(s) 975, 1436, 2228
HinP1I GCGC 3 cut(s) 975, 1436, 2228
HincII GTYRAC 1 cut(s) 1072
HindII GTYRAC 1 cut(s) 1072
Hpy166II GTNNAC 4 cut(s) 131, 1072, 1821, 2047
Hpy8I GTNNAC 4 cut(s) 131, 1072, 1821, 2047
Hpy99I CGWCG 2 cut(s) 712, 1891
HpyCH4III ACNGT 4 cut(s) 880, 991, 1033, 1138
HpyCH4IV ACGT 3 cut(s) 506, 1142, 1817
HpyCH4V TGCA 7 cut(s) 447, 556, 638, 917, 980, 1651, 2273
HpyF3I CTNAG 9 cut(s) 172, 191, 617, 757, 1488, 2172, 2187, 2223, 2259
HpySE526I ACGT 3 cut(s) 506, 1142, 1817
Hsp92I GRCGYC 2 cut(s) 1524, 2058
Hsp92II CATG 8 cut(s) 107, 121, 144, 1183, 1999, 2129, 2292, 2419
HspAI GCGC 3 cut(s) 975, 1436, 2228
KflI GGGWCCC 1 cut(s) 2532
KpnI GGTACC 6 cut(s) 153, 242, 308, 374, 1275, 1706
KspI CCGCGG 1 cut(s) 2331
LguI GCTCTTC 1 cut(s) 2364
LmnI GCTCC 7 cut(s) 1368, 1428, 1636, 1736, 1740, 2152, 2203
LweI GCATC 5 cut(s) 107, 543, 1036, 1474, 1801
MaeI CTAG 8 cut(s) 180, 909, 1152, 1169, 1223, 1409, 1415, 1547
MaeII ACGT 3 cut(s) 506, 1142, 1817
MaeIII GTNAC 7 cut(s) 874, 1057, 1138, 1171, 1636, 1813, 2003
MbiI CCGCTC 1 cut(s) 1287
MflI RGATCY 3 cut(s) 791, 854, 1775
MhlI GDGCHC 5 cut(s) 90, 173, 1373, 2035, 2376
MluCI AATT 8 cut(s) 290, 356, 422, 568, 773, 885, 1242, 2462
MlyI GAGTC 8 cut(s) 239, 836, 1573, 1892, 2153, 2249, 2285, 2300
MmeI TCCRAC 2 cut(s) 458, 855
Mph1103I ATGCAT 1 cut(s) 558
MroXI GAANNNNTTC 1 cut(s) 990
MseI TTAA 3 cut(s) 566, 572, 1245
MslI CAYNNNNRTG 4 cut(s) 603, 1536, 1797, 2381
MspA1I CMGCKG 7 cut(s) 641, 1016, 1264, 1736, 1951, 2194, 2330
Mva1269I GAATGC 1 cut(s) 1085
MvnI CGCG 5 cut(s) 951, 2051, 2201, 2230, 2330
NcoI CCATGG 3 cut(s) 117, 140, 2125
NlaIII CATG 8 cut(s) 107, 121, 144, 1183, 1999, 2129, 2292, 2419
NmeAIII GCCGAG 1 cut(s) 788
NmuCI GTSAC 5 cut(s) 874, 1057, 1636, 1813, 2003
NsiI ATGCAT 1 cut(s) 558
NspI RCATGY 1 cut(s) 1183
NspV TTCGAA 2 cut(s) 628, 1850
OliI CACNNNNGTG 1 cut(s) 603
PaeR7I CTCGAG 1 cut(s) 479
PagI TCATGA 1 cut(s) 2415
PaqCI CACCTGC 1 cut(s) 2101
PasI CCCWGGG 2 cut(s) 81, 210
PceI AGGCCT 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 2364
PcsI WCGNNNNNNNCGW 3 cut(s) 794, 1559, 1971
PctI GAATGC 1 cut(s) 1085
PdmI GAANNNNTTC 1 cut(s) 990
PfeI GAWTC 3 cut(s) 677, 953, 1380
PflFI GACNNNGTC 1 cut(s) 2515
PflMI CCANNNNNTGG 2 cut(s) 81, 146
PinAI ACCGGT 3 cut(s) 1268, 1705, 2543
Ple19I CGATCG 1 cut(s) 751
PleI GAGTC 8 cut(s) 238, 835, 1572, 1891, 2153, 2249, 2284, 2300
PmaCI CACGTG 1 cut(s) 507
PmlI CACGTG 1 cut(s) 507
PpsI GAGTC 8 cut(s) 238, 835, 1572, 1891, 2153, 2249, 2284, 2300
Ppu21I YACGTR 1 cut(s) 507
PpuMI RGGWCCY 3 cut(s) 260, 1102, 2532
PshAI GACNNNNGTC 2 cut(s) 1643, 1882
Psp124BI GAGCTC 2 cut(s) 1373, 2376
Psp5II RGGWCCY 3 cut(s) 260, 1102, 2532
PspCI CACGTG 1 cut(s) 507
PspEI GGTNACC 1 cut(s) 2003
PspFI CCCAGC 2 cut(s) 1226, 1736
PspPPI RGGWCCY 3 cut(s) 260, 1102, 2532
PstI CTGCAG 1 cut(s) 2275
PstNI CAGNNNCTG 4 cut(s) 81, 1037, 1105, 2279
PsuI RGATCY 3 cut(s) 791, 854, 1775
PsyI GACNNNGTC 1 cut(s) 2515
PvuI CGATCG 1 cut(s) 751
PvuII CAGCTG 2 cut(s) 1264, 1951
RseI CAYNNNNRTG 4 cut(s) 603, 1536, 1797, 2381
Rsr2I CGGWCCG 1 cut(s) 1569
RsrII CGGWCCG 1 cut(s) 1569
SacI GAGCTC 2 cut(s) 1373, 2376
SacII CCGCGG 1 cut(s) 2331
SapI GCTCTTC 1 cut(s) 2364
SaqAI TTAA 3 cut(s) 566, 572, 1245
SchI GAGTC 8 cut(s) 239, 836, 1573, 1892, 2153, 2249, 2285, 2300
SduI GDGCHC 5 cut(s) 90, 173, 1373, 2035, 2376
SfaNI GCATC 5 cut(s) 107, 543, 1036, 1474, 1801
SfcI CTRYAG 2 cut(s) 1029, 2271
Sfr274I CTCGAG 1 cut(s) 479
Sfr303I CCGCGG 1 cut(s) 2331
SfuI TTCGAA 2 cut(s) 628, 1850
SgrBI CCGCGG 1 cut(s) 2331
SinI GGWCC 9 cut(s) 260, 930, 1102, 1291, 1569, 1708, 1877, 1992, 2532
SlaI CTCGAG 1 cut(s) 479
SmaI CCCGGG 3 cut(s) 91, 964, 1875
SmiMI CAYNNNNRTG 4 cut(s) 603, 1536, 1797, 2381
SmlI CTYRAG 5 cut(s) 479, 1111, 2207, 2397, 2480
SmoI CTYRAG 5 cut(s) 479, 1111, 2207, 2397, 2480
SpeI ACTAGT 1 cut(s) 1168
Sse9I AATT 8 cut(s) 290, 356, 422, 568, 773, 885, 1242, 2462
SseBI AGGCCT 1 cut(s) 112
SspMI CTAG 8 cut(s) 180, 909, 1152, 1169, 1223, 1409, 1415, 1547
SstI GAGCTC 2 cut(s) 1373, 2376
StuI AGGCCT 1 cut(s) 112
StyI CCWWGG 6 cut(s) 117, 140, 660, 908, 998, 2125
TaaI ACNGT 4 cut(s) 880, 991, 1033, 1138
TaiI ACGT 3 cut(s) 509, 1145, 1820
TaqII GACCGA 1 cut(s) 1557
TasI AATT 8 cut(s) 290, 356, 422, 568, 773, 885, 1242, 2462
TatI WGTACW 2 cut(s) 1107, 2355
TauI GCSGC 6 cut(s) 179, 951, 1151, 2183, 2441, 2510
TfiI GAWTC 3 cut(s) 677, 953, 1380
Tru1I TTAA 3 cut(s) 566, 572, 1245
Tru9I TTAA 3 cut(s) 566, 572, 1245
TscAI CASTG 1 cut(s) 826
TseFI GTSAC 5 cut(s) 874, 1057, 1636, 1813, 2003
Tsp45I GTSAC 5 cut(s) 874, 1057, 1636, 1813, 2003
TspDTI ATGAA 3 cut(s) 1372, 1992, 2432
TspGWI ACGGA 1 cut(s) 1561
TspMI CCCGGG 3 cut(s) 89, 962, 1873
TspRI CASTG 1 cut(s) 826
Tth111I GACNNNGTC 1 cut(s) 2515
Van91I CCANNNNNTGG 2 cut(s) 81, 146
VpaK11BI GGWCC 9 cut(s) 260, 930, 1102, 1291, 1569, 1708, 1877, 1992, 2532
XagI CCTNNNNNAGG 1 cut(s) 214
XapI RAATTY 5 cut(s) 290, 356, 422, 568, 2462
XceI RCATGY 1 cut(s) 1183
XcmI CCANNNNNNNNNTGG 2 cut(s) 207, 2543
XhoI CTCGAG 1 cut(s) 479
XmaI CCCGGG 3 cut(s) 89, 962, 1873
XmaJI CCTAGG 1 cut(s) 908
XmiI GTMKAC 1 cut(s) 1820
XmnI GAANNNNTTC 1 cut(s) 990
XspI CTAG 8 cut(s) 180, 909, 1152, 1169, 1223, 1409, 1415, 1547
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.