Rmu_sc0005353.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005353.1
OG0000087
Physical Location & Seq
Reverse (-)
61859 .. 63759
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005353.1_g000014.1.cds

Sequence Viewer

Length: 1248 bp
atgggtggctctgcacgagaaccagttctgccaagggctatcgctaccgctgccccgatgcctacaatatctactgcggatattgaatctgtcaccggggcagctgaacctgaatgcctggcgaaaactcttgagtatgatggccatgtgggacttgtgctagcaagggccatcggagatcagtcctactcattgtccgatgtcgagagaaaatggatagcccgggtatacgctgtatggagtgaggaagaaagatcctcttataggtttatccggtactccgtactagataggctaggcttagggagacttcccgtgaaagtgccaaagaggaaaccccgaaagggcaaggaagacgacaggatgaacgacaacgcgttaacagacatgcttatgagccaaggagaagaagctctgcacattgatgtcgatctcttgacgaaggctacgggctgttcccttgataaacttctcctcgagattgacgaccatggaagaggaaaggcgccggtgtctggctctatatcatctctgtctgctgggtcagccgggagcgaggaagctttgctccctagtgagaagaaaaggcatcttaggcaccgccatcagagagggaacaaggaggtcgttacctacactggttgggacgtcaagggggtggagcctaaaaggaaaaagaaaaatcctccgggattggaggcgtcgctgtcactcgagctcttgtcccctgctattctcatagtccccaagaagcctatcaagcagttgctgaatgagtatggggtcgccgatgaaaagttcgtgtgctctatgctcgccgatttgaaggatatatacctcgatcgggtacgggcgaaggacgatacccctcaagagaatcgtcacatcgcccgggaatcactgatgtgggcactgttcaacgtgtatgctattgacgctagcaaggaagatacgtacttgaaggaggaggttagcagtctctccgggcaagtgaagtatcttcaaggggagaagggaaagctggagaagaagcgggacctattgaagaagatggtagagtccttaaggccccctgttgaccgagctggaggcagcgaagcaacggatcgccgagctcgaagagagtgggtggcagccgggtacatggatgaggctatgttcagggggctccttgagaagaagaagaaggagcaggaggctgctgccaaggagggtgtcggtggatctcagagtaccgctcatgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

46.02

Weight (kDa)

8.64

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 651
AccB1I GGYRCC 2 cut(s) 505, 597
AccBSI CCGCTC 1 cut(s) 1238
AccI GTMKAC 1 cut(s) 228
AccII CGCG 1 cut(s) 377
AciI CCGC 5 cut(s) 48, 77, 601, 1033, 1236
AclWI GGATC 3 cut(s) 249, 1113, 1231
AcoI YGGCCR 1 cut(s) 142
AcyI GRCGYC 3 cut(s) 506, 648, 701
AfaI GTAC 6 cut(s) 278, 285, 849, 956, 1142, 1234
AfiI CCNNNNNNNGG 4 cut(s) 264, 344, 515, 844
AflII CTTAAG 1 cut(s) 1063
AflIII ACRYGT 2 cut(s) 375, 921
AgsI TTSAA 6 cut(s) 86, 826, 919, 961, 1004, 1045
AjnI CCWGG 1 cut(s) 117
AleI CACNNNNGTG 1 cut(s) 904
AluBI AGCT 7 cut(s) 104, 413, 563, 718, 1021, 1085, 1115
AluI AGCT 7 cut(s) 104, 413, 563, 718, 1021, 1085, 1115
Alw21I GWGCWC 3 cut(s) 720, 809, 1117
Alw26I GTCTC 2 cut(s) 301, 983
AlwI GGATC 3 cut(s) 249, 1113, 1231
AlwNI CAGNNNCTG 1 cut(s) 769
Ama87I CYCGRG 4 cut(s) 222, 476, 713, 891
AoxI GGCC 3 cut(s) 142, 168, 1067
ApeKI GCWGC 6 cut(s) 50, 101, 1092, 1133, 1199, 1202
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 3 cut(s) 168, 1036, 1068
AsuC2I CCSGG 9 cut(s) 97, 223, 224, 550, 690, 892, 893, 985, 1138
AsuHPI GGTGA 1 cut(s) 85
AsuNHI GCTAGC 2 cut(s) 160, 938
AvaI CYCGRG 4 cut(s) 222, 476, 713, 891
AvaII GGWCC 1 cut(s) 1036
BaeGI GKGCMC 1 cut(s) 913
BalI TGGCCA 1 cut(s) 144
BanI GGYRCC 2 cut(s) 505, 597
BanII GRGCYC 3 cut(s) 720, 1117, 1170
BarI GAAGNNNNNNTAC 2 cut(s) 818, 850
BauI CACGAG 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 3 cut(s) 720, 809, 1117
BbvI GCAGC 6 cut(s) 37, 113, 1104, 1145, 1186, 1189
BccI CCATC 4 cut(s) 134, 179, 612, 1045
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 9 cut(s) 97, 223, 224, 550, 690, 892, 893, 985, 1138
BcoDI GTCTC 2 cut(s) 301, 983
BfaI CTAG 5 cut(s) 161, 287, 296, 573, 939
BfoI RGCGCY 1 cut(s) 509
BfrI CTTAAG 1 cut(s) 1063
BisI GCNGC 6 cut(s) 51, 102, 1093, 1134, 1200, 1203
BlsI GCNGC 6 cut(s) 52, 103, 1094, 1135, 1201, 1204
Bme18I GGWCC 1 cut(s) 1036
BmeT110I CYCGRG 4 cut(s) 222, 476, 713, 891
BmgT120I GGNCC 3 cut(s) 168, 1036, 1068
BmiI GGNNCC 6 cut(s) 507, 599, 663, 1037, 1070, 1169
BmsI GCATC 2 cut(s) 48, 598
BmtI GCTAGC 2 cut(s) 164, 942
BpiI GAAGAC 1 cut(s) 360
BplI GAGNNNNNCTC 1 cut(s) 1222
BpmI CTGGAG 2 cut(s) 1043, 1107
Bpu10I CCTNAGC 1 cut(s) 301
BpuEI CTTGAG 3 cut(s) 152, 855, 1193
BpuMI CCSGG 9 cut(s) 97, 223, 224, 550, 690, 892, 893, 985, 1138
BsaAI YACGTR 1 cut(s) 954
BsaBI GATNNNNATC 1 cut(s) 429
BsaHI GRCGYC 3 cut(s) 506, 648, 701
BsaJI CCNNGG 7 cut(s) 32, 96, 222, 400, 490, 891, 1206
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 4 cut(s) 264, 344, 515, 844
Bse118I RCCGGY 1 cut(s) 508
Bse1I ACTGG 2 cut(s) 23, 643
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 7 cut(s) 32, 96, 222, 400, 490, 891, 1206
BseGI GGATG 2 cut(s) 369, 1153
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 4 cut(s) 264, 344, 515, 844
BseMII CTCAG 1 cut(s) 1241
BseNI ACTGG 2 cut(s) 23, 643
BseRI GAGGAG 2 cut(s) 464, 980
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 6 cut(s) 37, 113, 1104, 1145, 1186, 1189
BseYI CCCAGC 1 cut(s) 539
BsgI GTGCAG 1 cut(s) 401
Bsh1236I CGCG 1 cut(s) 377
Bsh1285I CGRYCG 1 cut(s) 844
BshFI GGCC 3 cut(s) 144, 170, 1069
BshNI GGYRCC 2 cut(s) 505, 597
BsiEI CGRYCG 1 cut(s) 844
BsiHKAI GWGCWC 3 cut(s) 720, 809, 1117
BsiHKCI CYCGRG 4 cut(s) 222, 476, 713, 891
BsiSI CCGG 9 cut(s) 96, 223, 274, 509, 549, 689, 892, 984, 1137
BslFI GGGAC 5 cut(s) 165, 659, 709, 728, 1049
BslI CCNNNNNNNGG 4 cut(s) 264, 344, 515, 844
BsmAI GTCTC 2 cut(s) 301, 983
BsmFI GGGAC 5 cut(s) 165, 659, 709, 728, 1049
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 3 cut(s) 144, 170, 1069
BsoBI CYCGRG 4 cut(s) 222, 476, 713, 891
Bsp1286I GDGCHC 5 cut(s) 720, 809, 913, 1117, 1170
Bsp143I GATC 6 cut(s) 178, 254, 430, 841, 1105, 1223
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 5 cut(s) 48, 77, 601, 1033, 1236
BspANI GGCC 3 cut(s) 144, 170, 1069
BspCNI CTCAG 1 cut(s) 1240
BspFNI CGCG 1 cut(s) 377
BspHI TCATGA 1 cut(s) 1240
BspLI GGNNCC 6 cut(s) 507, 599, 663, 1037, 1070, 1169
BspOI GCTAGC 2 cut(s) 164, 942
BspPI GGATC 3 cut(s) 249, 1113, 1231
BspT107I GGYRCC 2 cut(s) 505, 597
BspTI CTTAAG 1 cut(s) 1063
BsrBI CCGCTC 1 cut(s) 1238
BsrFI RCCGGY 1 cut(s) 508
BsrI ACTGG 2 cut(s) 23, 643
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 7 cut(s) 32, 96, 222, 400, 490, 891, 1206
BssMI GATC 6 cut(s) 178, 254, 430, 841, 1105, 1223
BssNAI GTATAC 1 cut(s) 229
BssNI GRCGYC 3 cut(s) 506, 648, 701
BssSI CACGAG 1 cut(s) 15
BssT1I CCWWGG 4 cut(s) 32, 400, 490, 1206
Bst1107I GTATAC 1 cut(s) 229
Bst2BI CACGAG 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 915
Bst6I CTCTTC 2 cut(s) 490, 1114
BstACI GRCGYC 3 cut(s) 506, 648, 701
BstAFI CTTAAG 1 cut(s) 1063
BstBAI YACGTR 1 cut(s) 954
BstC8I GCNNGC 3 cut(s) 162, 816, 940
BstDEI CTNAG 3 cut(s) 301, 593, 1227
BstDSI CCRYGG 1 cut(s) 490
BstENI CCTNNNNNAGG 1 cut(s) 262
BstF5I GGATG 2 cut(s) 369, 1153
BstFNI CGCG 1 cut(s) 377
BstH2I RGCGCY 1 cut(s) 509
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 6 cut(s) 181, 257, 433, 844, 1108, 1226
BstMAI GTCTC 2 cut(s) 301, 983
BstMBI GATC 6 cut(s) 178, 254, 430, 841, 1105, 1223
BstMCI CGRYCG 1 cut(s) 844
BstMWI GCNNNNNNNGC 5 cut(s) 50, 545, 595, 760, 935
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 913
BstSNI TACGTA 1 cut(s) 954
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 6 cut(s) 37, 113, 1104, 1145, 1186, 1189
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 2 cut(s) 254, 1223
BstYI RGATCY 2 cut(s) 254, 1223
BstZ17I GTATAC 1 cut(s) 229
BsuRI GGCC 3 cut(s) 144, 170, 1069
BtgI CCRYGG 1 cut(s) 490
BtgZI GCGATG 1 cut(s) 871
BtsCI GGATG 2 cut(s) 369, 1153
BtsIMutI CAGTG 3 cut(s) 636, 899, 911
Cac8I GCNNGC 3 cut(s) 162, 816, 940
CaiI CAGNNNCTG 1 cut(s) 769
CciI TCATGA 1 cut(s) 1240
CfoI GCGC 1 cut(s) 508
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 3 cut(s) 168, 1036, 1068
Cfr9I CCCGGG 2 cut(s) 222, 891
CseI GACGC 2 cut(s) 690, 944
Csp6I GTAC 6 cut(s) 277, 284, 848, 955, 1141, 1233
CviAII CATG 5 cut(s) 146, 388, 491, 1144, 1241
CviQI GTAC 6 cut(s) 277, 284, 848, 955, 1141, 1233
DdeI CTNAG 3 cut(s) 301, 593, 1227
DinI GGCGCC 1 cut(s) 507
DpnI GATC 6 cut(s) 180, 256, 432, 843, 1107, 1225
DpnII GATC 6 cut(s) 178, 254, 430, 841, 1105, 1223
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 490, 1114
EarI CTCTTC 2 cut(s) 490, 1114
Ecl136II GAGCTC 2 cut(s) 718, 1115
Eco105I TACGTA 1 cut(s) 954
Eco130I CCWWGG 4 cut(s) 32, 400, 490, 1206
Eco24I GRGCYC 3 cut(s) 720, 1117, 1170
Eco47I GGWCC 1 cut(s) 1036
Eco53kI GAGCTC 2 cut(s) 718, 1115
Eco88I CYCGRG 4 cut(s) 222, 476, 713, 891
EcoICRI GAGCTC 2 cut(s) 718, 1115
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoO109I RGGNCCY 2 cut(s) 1036, 1068
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 4 cut(s) 32, 400, 490, 1206
EcoT38I GRGCYC 3 cut(s) 720, 1117, 1170
EgeI GGCGCC 1 cut(s) 507
EheI GGCGCC 1 cut(s) 507
ErhI CCWWGG 4 cut(s) 32, 400, 490, 1206
FaeI CATG 5 cut(s) 149, 391, 494, 1147, 1244
FalI AAGNNNNNCTT 2 cut(s) 244, 276
FaqI GGGAC 5 cut(s) 165, 659, 709, 728, 1049
FatI CATG 5 cut(s) 145, 387, 490, 1143, 1240
FauI CCCGC 1 cut(s) 1026
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 6 cut(s) 51, 102, 1093, 1134, 1200, 1203
FokI GGATG 2 cut(s) 376, 1160
FriOI GRGCYC 3 cut(s) 720, 1117, 1170
Fsp4HI GCNGC 6 cut(s) 51, 102, 1093, 1134, 1200, 1203
FspBI CTAG 5 cut(s) 161, 287, 296, 573, 939
GlaI GCGC 1 cut(s) 507
GluI GCNGC 6 cut(s) 51, 102, 1093, 1134, 1200, 1203
GsaI CCCAGC 1 cut(s) 543
GsuI CTGGAG 2 cut(s) 1043, 1107
HaeII RGCGCY 1 cut(s) 509
HaeIII GGCC 3 cut(s) 144, 170, 1069
HapII CCGG 9 cut(s) 96, 223, 274, 509, 549, 689, 892, 984, 1137
HgaI GACGC 2 cut(s) 690, 944
HhaI GCGC 1 cut(s) 508
Hin1I GRCGYC 3 cut(s) 506, 648, 701
Hin1II CATG 5 cut(s) 149, 391, 494, 1147, 1244
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 2 cut(s) 381, 1078
HindII GTYRAC 2 cut(s) 381, 1078
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 4 cut(s) 86, 877, 896, 1058
HpaI GTTAAC 1 cut(s) 381
HpaII CCGG 9 cut(s) 96, 223, 274, 509, 549, 689, 892, 984, 1137
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 3 cut(s) 229, 381, 1078
Hpy188I TCNGA 4 cut(s) 176, 199, 609, 1230
Hpy188III TCNNGA 6 cut(s) 131, 205, 436, 478, 872, 1241
Hpy8I GTNNAC 3 cut(s) 229, 381, 1078
Hpy99I CGWCG 1 cut(s) 706
HpyAV CCTTC 6 cut(s) 436, 820, 850, 955, 1006, 1180
HpyCH4III ACNGT 1 cut(s) 915
HpyCH4IV ACGT 3 cut(s) 648, 921, 953
HpyCH4V TGCA 2 cut(s) 14, 418
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 545, 595, 760, 935
HpyF3I CTNAG 3 cut(s) 301, 593, 1227
HpySE526I ACGT 3 cut(s) 648, 921, 953
Hsp92I GRCGYC 3 cut(s) 506, 648, 701
Hsp92II CATG 5 cut(s) 149, 391, 494, 1147, 1244
HspAI GCGC 1 cut(s) 506
KasI GGCGCC 1 cut(s) 505
KspAI GTTAAC 1 cut(s) 381
Kzo9I GATC 6 cut(s) 178, 254, 430, 841, 1105, 1223
LmnI GCTCC 5 cut(s) 552, 573, 661, 1173, 1189
Lsp1109I GCAGC 6 cut(s) 37, 113, 1104, 1145, 1186, 1189
LweI GCATC 2 cut(s) 48, 598
MaeI CTAG 5 cut(s) 161, 287, 296, 573, 939
MaeII ACGT 3 cut(s) 648, 921, 953
MaeIII GTNAC 4 cut(s) 91, 628, 708, 881
MalI GATC 6 cut(s) 180, 256, 432, 843, 1107, 1225
MbiI CCGCTC 1 cut(s) 1238
MboI GATC 6 cut(s) 178, 254, 430, 841, 1105, 1223
MflI RGATCY 2 cut(s) 254, 1223
MhlI GDGCHC 5 cut(s) 720, 809, 913, 1117, 1170
MlsI TGGCCA 1 cut(s) 144
MluI ACGCGT 1 cut(s) 375
MluNI TGGCCA 1 cut(s) 144
Mly113I GGCGCC 1 cut(s) 506
MlyI GAGTC 1 cut(s) 1067
Mox20I TGGCCA 1 cut(s) 144
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 144
MseI TTAA 2 cut(s) 380, 1064
MslI CAYNNNNRTG 3 cut(s) 392, 423, 904
Msp20I TGGCCA 1 cut(s) 144
MspA1I CMGCKG 2 cut(s) 50, 104
MspCI CTTAAG 1 cut(s) 1063
MspI CCGG 9 cut(s) 96, 223, 274, 509, 549, 689, 892, 984, 1137
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 5 cut(s) 50, 545, 595, 760, 935
NarI GGCGCC 1 cut(s) 506
NciI CCSGG 9 cut(s) 97, 223, 224, 550, 690, 892, 893, 985, 1138
NcoI CCATGG 1 cut(s) 490
NdeII GATC 6 cut(s) 178, 254, 430, 841, 1105, 1223
NheI GCTAGC 2 cut(s) 160, 938
NlaIII CATG 5 cut(s) 149, 391, 494, 1147, 1244
NlaIV GGNNCC 6 cut(s) 507, 599, 663, 1037, 1070, 1169
NmeAIII GCCGAG 1 cut(s) 1136
NmuCI GTSAC 3 cut(s) 91, 708, 881
NspI RCATGY 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 904
PaeR7I CTCGAG 2 cut(s) 476, 713
PagI TCATGA 1 cut(s) 1240
PcsI WCGNNNNNNNCGW 2 cut(s) 483, 1114
PctI GAATGC 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 3 cut(s) 86, 877, 896
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 6 cut(s) 52, 103, 1094, 1135, 1201, 1204
Ple19I CGATCG 1 cut(s) 844
PleI GAGTC 1 cut(s) 1066
PluTI GGCGCC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 1066
Ppu21I YACGTR 1 cut(s) 954
PpuMI RGGWCCY 1 cut(s) 1036
Psp124BI GAGCTC 2 cut(s) 720, 1117
Psp5II RGGWCCY 1 cut(s) 1036
Psp6I CCWGG 1 cut(s) 117
PspFI CCCAGC 1 cut(s) 539
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 6 cut(s) 507, 599, 663, 1037, 1070, 1169
PspPI GGNCC 3 cut(s) 168, 1036, 1068
PspPPI RGGWCCY 1 cut(s) 1036
PspXI VCTCGAGB 1 cut(s) 713
PstNI CAGNNNCTG 1 cut(s) 769
PsuI RGATCY 2 cut(s) 254, 1223
PvuI CGATCG 1 cut(s) 844
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 6 cut(s) 278, 285, 849, 956, 1142, 1234
RsaNI GTAC 6 cut(s) 277, 284, 848, 955, 1141, 1233
RseI CAYNNNNRTG 3 cut(s) 392, 423, 904
SacI GAGCTC 2 cut(s) 720, 1117
SaqAI TTAA 2 cut(s) 380, 1064
SatI GCNGC 6 cut(s) 51, 102, 1093, 1134, 1200, 1203
Sau3AI GATC 6 cut(s) 178, 254, 430, 841, 1105, 1223
Sau96I GGNCC 3 cut(s) 168, 1036, 1068
SchI GAGTC 1 cut(s) 1067
SduI GDGCHC 5 cut(s) 720, 809, 913, 1117, 1170
SfaNI GCATC 2 cut(s) 48, 598
SfoI GGCGCC 1 cut(s) 507
Sfr274I CTCGAG 2 cut(s) 476, 713
SgrAI CRCCGGYG 1 cut(s) 508
SinI GGWCC 1 cut(s) 1036
SlaI CTCGAG 2 cut(s) 476, 713
SmaI CCCGGG 2 cut(s) 224, 893
SmiMI CAYNNNNRTG 3 cut(s) 392, 423, 904
SmlI CTYRAG 6 cut(s) 131, 476, 713, 870, 1063, 1172
SmoI CTYRAG 6 cut(s) 131, 476, 713, 870, 1063, 1172
SnaBI TACGTA 1 cut(s) 954
SsiI CCGC 5 cut(s) 48, 77, 601, 1033, 1236
SspDI GGCGCC 1 cut(s) 505
SspMI CTAG 5 cut(s) 161, 287, 296, 573, 939
SstI GAGCTC 2 cut(s) 720, 1117
StyI CCWWGG 4 cut(s) 32, 400, 490, 1206
TaaI ACNGT 1 cut(s) 915
TaiI ACGT 3 cut(s) 651, 924, 956
TaqI TCGA 6 cut(s) 204, 429, 477, 714, 840, 1117
TaqII GACCGA 1 cut(s) 1095
TfiI GAWTC 3 cut(s) 86, 877, 896
Tru1I TTAA 2 cut(s) 380, 1064
Tru9I TTAA 2 cut(s) 380, 1064
TscAI CASTG 3 cut(s) 643, 906, 918
TseFI GTSAC 3 cut(s) 91, 708, 881
TseI GCWGC 6 cut(s) 50, 101, 1092, 1133, 1199, 1202
Tsp45I GTSAC 3 cut(s) 91, 708, 881
TspDTI ATGAA 2 cut(s) 380, 807
TspGWI ACGGA 2 cut(s) 271, 1118
TspMI CCCGGG 2 cut(s) 222, 891
TspRI CASTG 3 cut(s) 643, 906, 918
Vha464I CTTAAG 1 cut(s) 1063
VpaK11BI GGWCC 1 cut(s) 1036
XagI CCTNNNNNAGG 1 cut(s) 262
XceI RCATGY 1 cut(s) 391
XhoI CTCGAG 2 cut(s) 476, 713
XmaI CCCGGG 2 cut(s) 222, 891
XmiI GTMKAC 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 5 cut(s) 161, 287, 296, 573, 939
ZraI GACGTC 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.