Rmu_co8493267.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8493267.1
Physical Location & Seq
Reverse (-)
2219 .. 2555
337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8493267.1_g000002.1.cds

Sequence Viewer

Length: 291 bp
atgactagtaaacagaaggaagctgcagagtctgcaacgtcatggaaggcaagagcagaaaacctagaggaacgtcttcctgttgaaaggcaagaggctgttgctgagtacaagggctctcaagagcttattgacatgctcctcgctgcccaagacaaagccattatcatcaagtataaagagtgggtggcggtcgggtatatggatgaagccaagttcaggcgggggcttcttgaaaaaaagaagaaagaacaggaggctgcatcccagggaggtgccggtggttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.7

Weight (kDa)

6.36

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 275
AciI CCGC 2 cut(s) 191, 223
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 2 cut(s) 86, 236
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 2 cut(s) 23, 127
AluI AGCT 2 cut(s) 23, 127
AlwNI CAGNNNCTG 1 cut(s) 32
ApeKI GCWGC 3 cut(s) 23, 146, 260
Asp700I GAANNNNTTC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 10, 133, 247
BciT130I CCWGG 1 cut(s) 269
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 2 cut(s) 6, 65
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 3 cut(s) 24, 147, 261
BlsI GCNGC 3 cut(s) 25, 148, 262
Bme1390I CCNGG 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 277, 286
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 272
BpiI GAAGAC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 267, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 278
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 267, 268
BseGI GGATG 2 cut(s) 211, 263
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 96
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 3 cut(s) 10, 133, 247
Bsh1285I CGRYCG 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 275
BsiEI CGRYCG 1 cut(s) 195
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 119
BspACI CCGC 2 cut(s) 191, 223
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 277, 286
BspMAI CTGCAG 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 267, 268
Bst2UI CCWGG 1 cut(s) 269
BstAPI GCANNNNNTGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 211, 263
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 10, 133, 247
BstV2I GAAGAC 1 cut(s) 68
BtsCI GGATG 2 cut(s) 211, 263
CaiI CAGNNNCTG 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 278
Csp6I GTAC 1 cut(s) 109
CviAII CATG 2 cut(s) 42, 136
CviJI RGCY 8 cut(s) 23, 98, 117, 127, 161, 212, 229, 260
CviKI_1 RGCY 8 cut(s) 23, 98, 117, 127, 161, 212, 229, 260
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 119
FaeI CATG 2 cut(s) 45, 139
FaiI YATR 5 cut(s) 43, 137, 177, 201, 203
FatI CATG 2 cut(s) 41, 135
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 24, 147, 261
FokI GGATG 2 cut(s) 218, 250
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 3 cut(s) 24, 147, 261
FspBI CTAG 2 cut(s) 6, 65
GluI GCNGC 3 cut(s) 24, 147, 261
HapII CCGG 1 cut(s) 279
Hin1II CATG 2 cut(s) 45, 139
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 279
Hpy166II GTNNAC 1 cut(s) 11
Hpy188III TCNNGA 3 cut(s) 122, 233, 288
Hpy8I GTNNAC 1 cut(s) 11
HpyAV CCTTC 2 cut(s) 10, 40
HpyCH4IV ACGT 2 cut(s) 38, 73
HpyCH4V TGCA 3 cut(s) 26, 35, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 2 cut(s) 38, 73
Hsp92II CATG 2 cut(s) 45, 139
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 5 cut(s) 93, 205, 239, 254, 281
Lsp1109I GCAGC 3 cut(s) 10, 133, 247
LweI GCATC 1 cut(s) 272
MaeI CTAG 2 cut(s) 6, 65
MaeII ACGT 2 cut(s) 38, 73
MboII GAAGA 2 cut(s) 68, 256
MhlI GDGCHC 1 cut(s) 119
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 5 cut(s) 61, 88, 152, 250, 266
MroXI GAANNNNTTC 1 cut(s) 75
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 32
NlaIII CATG 2 cut(s) 45, 139
NlaIV GGNNCC 2 cut(s) 277, 286
NspI RCATGY 1 cut(s) 139
PasI CCCWGGG 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 75
PkrI GCNGC 3 cut(s) 25, 148, 262
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 277, 286
PstI CTGCAG 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SatI GCNGC 3 cut(s) 24, 147, 261
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 1 cut(s) 119
SetI ASST 6 cut(s) 25, 41, 66, 76, 129, 277
SfaNI GCATC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
SpeI ACTAGT 1 cut(s) 5
SsiI CCGC 2 cut(s) 191, 223
SspMI CTAG 2 cut(s) 6, 65
StyD4I CCNGG 1 cut(s) 267
TaiI ACGT 2 cut(s) 41, 76
TatI WGTACW 1 cut(s) 108
TseI GCWGC 3 cut(s) 23, 146, 260
TspDTI ATGAA 1 cut(s) 222
XceI RCATGY 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 2 cut(s) 6, 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.