Rroxscaffold_5G00378940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000087
Physical Location & Seq
Forward (+)
59479704 .. 59483965
4262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378940.1

Sequence Viewer

Length: 939 bp
ATGAATTCCGAGTCGTGTACCGTGACTTTCACCGCCCGGGACTACAAGCTCTTAGTTACCGATATGCCCACATCTCGAGCAAGAGATGTTCTCCTAGAGATCGTGGTTACCGTTGTCGATACCGGAAGAGATAAGGCGCCGGTGTACGGCTCTATTTCTTCCCGATCTGCCGGTCGGTGGAAGCGAGGAAGTCTTGCTTCCGGTGAGAAAAGAAGGTTCCACGAGCACCGCCATCGGAGCGGGGATACCGAAGAGGTCACCTACACCGGTTGGGATGTCAAAGGGGCAGGACCCAAGAGGCAAAAGAAGAGTCATCCGGGACCGAACCAACGCCATCGCTTGCACTTCGTCCCCGGCATACCAAAGAGTCCCCAAGAAACCCATCAAGCAGTGTTGACCGAGTACGGGGTTGCCGACAAGAAGTTCGTGTGTTCAATGTCGGCTGATTTGAAAGACATCGACCTCGACCCCGTACGAGTGAAGGACGACTCTCCCCGTGCAAATTGTCGTGAAGATACTCACTTGAAGGAAGAGGTTAGCAACCTCTCCGGGCAAGTGAAGTATCTTCACGGGGAGAAAGCAAAGCCGGAGAAGGAGCGGGACTCCTTGAAGAGGAAGGTAGAGTCCTTAACTCCCAAGGTAGCCGAGTTGGAGGCGGCCGAGAAGAAGATAGTGGATCTTGAGGGTGAACTAGCCGGGGCACGGGATGAGTTAGGGAGTGCCTTCCCACCGAAAGGCGGAGGCCGTTGCCGGTATAAAAATTCCCAAGAGCTTATTGATATGATGCTCGCTGCTCAAGACAAGGCCTTGATTATGAAGTACAAGGAGTGGGTGGCAGCTGGGTACCTAGATGAAGCTAAATTCAAGCGGGGACTTCTTGAGAAGAAGAAGAAGGAACAGGAGGTCAAGGAGAGAGAACAAGGAAGCCGGGTGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

35.11

Weight (kDa)

9.24

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 843
AccB1I GGYRCC 2 cut(s) 136, 843
AccBSI CCGCTC 2 cut(s) 240, 598
AciI CCGC 7 cut(s) 33, 229, 240, 598, 656, 738, 868
AclWI GGATC 1 cut(s) 684
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 3 cut(s) 4, 760, 860
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 6 cut(s) 19, 146, 404, 474, 821, 845
AfiI CCNNNNNNNGG 7 cut(s) 146, 177, 405, 612, 702, 734, 737
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 5 cut(s) 435, 451, 526, 610, 865
AluBI AGCT 4 cut(s) 49, 772, 839, 857
AluI AGCT 4 cut(s) 49, 772, 839, 857
Alw21I GWGCWC 1 cut(s) 228
AlwI GGATC 1 cut(s) 684
Ama87I CYCGRG 2 cut(s) 36, 75
AoxI GGCC 3 cut(s) 657, 742, 804
ApeKI GCWGC 2 cut(s) 791, 836
ApoI RAATTY 3 cut(s) 4, 760, 860
ArsI GACNNNNNNTTYG 4 cut(s) 295, 327, 407, 439
AsiGI ACCGGT 1 cut(s) 266
Asp718I GGTACC 1 cut(s) 843
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 290, 320
AsuC2I CCSGG 7 cut(s) 37, 38, 318, 354, 550, 697, 929
AsuHPI GGTGA 4 cut(s) 22, 215, 250, 698
AvaI CYCGRG 2 cut(s) 36, 75
AvaII GGWCC 2 cut(s) 290, 320
BaeGI GKGCMC 1 cut(s) 703
BanI GGYRCC 2 cut(s) 136, 843
BauI CACGAG 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 778, 848
BccI CCATC 3 cut(s) 240, 342, 390
BceAI ACGGC 2 cut(s) 163, 729
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciVI GTATCC 1 cut(s) 238
BcnI CCSGG 7 cut(s) 37, 38, 318, 354, 550, 697, 929
BfaI CTAG 3 cut(s) 95, 692, 848
BfoI RGCGCY 1 cut(s) 140
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 3 cut(s) 657, 792, 837
BlsI GCNGC 3 cut(s) 658, 793, 838
Bme1390I CCNGG 7 cut(s) 37, 38, 318, 354, 550, 697, 929
Bme18I GGWCC 2 cut(s) 290, 320
BmeT110I CYCGRG 2 cut(s) 36, 75
BmgT120I GGNCC 2 cut(s) 290, 320
BmiI GGNNCC 5 cut(s) 138, 218, 292, 321, 845
BmrFI CCNGG 7 cut(s) 37, 38, 318, 354, 550, 697, 929
BmsI GCATC 1 cut(s) 774
BplI GAGNNNNNCTC 4 cut(s) 75, 107, 587, 619
BpuEI CTTGAG 3 cut(s) 701, 780, 899
BpuMI CCSGG 7 cut(s) 37, 38, 318, 354, 550, 697, 929
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 4 cut(s) 36, 352, 636, 696
BsaWI WCCGGW 3 cut(s) 122, 200, 266
Bsc4I CCNNNNNNNGG 7 cut(s) 146, 177, 405, 612, 702, 734, 737
Bse118I RCCGGY 4 cut(s) 139, 170, 266, 750
BseDI CCNNGG 4 cut(s) 36, 352, 636, 696
BseGI GGATG 3 cut(s) 280, 313, 712
BseLI CCNNNNNNNGG 7 cut(s) 146, 177, 405, 612, 702, 734, 737
BseSI GKGCMC 1 cut(s) 703
BseX3I CGGCCG 1 cut(s) 657
BseXI GCAGC 2 cut(s) 778, 848
BseYI CCCAGC 1 cut(s) 839
Bsh1285I CGRYCG 2 cut(s) 175, 660
BshFI GGCC 3 cut(s) 659, 744, 806
BshNI GGYRCC 2 cut(s) 136, 843
BshTI ACCGGT 1 cut(s) 266
BsiEI CGRYCG 2 cut(s) 175, 660
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 2 cut(s) 36, 75
BsiWI CGTACG 1 cut(s) 472
BslFI GGGAC 6 cut(s) 53, 333, 335, 354, 614, 885
BslI CCNNNNNNNGG 7 cut(s) 146, 177, 405, 612, 702, 734, 737
BsmFI GGGAC 6 cut(s) 53, 333, 335, 354, 614, 885
BsnI GGCC 3 cut(s) 659, 744, 806
BsoBI CYCGRG 2 cut(s) 36, 75
Bsp1286I GDGCHC 2 cut(s) 228, 703
Bsp143I GATC 3 cut(s) 99, 164, 676
BspACI CCGC 7 cut(s) 33, 229, 240, 598, 656, 738, 868
BspANI GGCC 3 cut(s) 659, 744, 806
BspLI GGNNCC 5 cut(s) 138, 218, 292, 321, 845
BspPI GGATC 1 cut(s) 684
BspT107I GGYRCC 2 cut(s) 136, 843
BsrBI CCGCTC 2 cut(s) 240, 598
BsrFI RCCGGY 4 cut(s) 139, 170, 266, 750
BssAI RCCGGY 4 cut(s) 139, 170, 266, 750
BssECI CCNNGG 4 cut(s) 36, 352, 636, 696
BssMI GATC 3 cut(s) 99, 164, 676
BssNI GRCGYC 1 cut(s) 137
BssSI CACGAG 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 636
Bst2BI CACGAG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 22, 112
Bst6I CTCTTC 5 cut(s) 121, 246, 302, 525, 605
BstACI GRCGYC 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 341, 789
BstDEI CTNAG 1 cut(s) 52
BstEII GGTNACC 2 cut(s) 106, 256
BstENI CCTNNNNNAGG 1 cut(s) 610
BstF5I GGATG 3 cut(s) 280, 313, 712
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 3 cut(s) 102, 167, 679
BstMBI GATC 3 cut(s) 99, 164, 676
BstMCI CGRYCG 2 cut(s) 175, 660
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstPI GGTNACC 2 cut(s) 106, 256
BstSCI CCNGG 7 cut(s) 35, 36, 316, 352, 548, 695, 927
BstSLI GKGCMC 1 cut(s) 703
BstV1I GCAGC 2 cut(s) 778, 848
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BstZI CGGCCG 1 cut(s) 657
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 3 cut(s) 659, 744, 806
BtgZI GCGATG 1 cut(s) 320
BtsCI GGATG 3 cut(s) 280, 313, 712
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 2 cut(s) 341, 789
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 4 cut(s) 139, 170, 266, 750
Cfr13I GGNCC 2 cut(s) 290, 320
Cfr9I CCCGGG 1 cut(s) 36
Csp6I GTAC 6 cut(s) 18, 145, 403, 473, 820, 844
CspAI ACCGGT 1 cut(s) 266
CviQI GTAC 6 cut(s) 18, 145, 403, 473, 820, 844
DdeI CTNAG 1 cut(s) 52
DinI GGCGCC 1 cut(s) 138
DpnI GATC 3 cut(s) 101, 166, 678
DpnII GATC 3 cut(s) 99, 164, 676
EaeI YGGCCR 1 cut(s) 657
EagI CGGCCG 1 cut(s) 657
Eam1104I CTCTTC 5 cut(s) 121, 246, 302, 525, 605
EarI CTCTTC 5 cut(s) 121, 246, 302, 525, 605
EciI GGCGGA 1 cut(s) 753
EclXI CGGCCG 1 cut(s) 657
Eco130I CCWWGG 1 cut(s) 636
Eco147I AGGCCT 1 cut(s) 806
Eco47I GGWCC 2 cut(s) 290, 320
Eco52I CGGCCG 1 cut(s) 657
Eco88I CYCGRG 2 cut(s) 36, 75
Eco91I GGTNACC 2 cut(s) 106, 256
EcoNI CCTNNNNNAGG 1 cut(s) 610
EcoO109I RGGNCCY 1 cut(s) 290
EcoO65I GGTNACC 2 cut(s) 106, 256
EcoRI GAATTC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 636
EgeI GGCGCC 1 cut(s) 138
EheI GGCGCC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 636
FaiI YATR 6 cut(s) 65, 359, 756, 782, 815, 937
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FaqI GGGAC 6 cut(s) 53, 333, 335, 354, 614, 885
FauI CCCGC 3 cut(s) 233, 591, 861
Fnu4HI GCNGC 3 cut(s) 657, 792, 837
FokI GGATG 3 cut(s) 287, 300, 719
Fsp4HI GCNGC 3 cut(s) 657, 792, 837
FspBI CTAG 3 cut(s) 95, 692, 848
GlaI GCGC 1 cut(s) 138
GluI GCNGC 3 cut(s) 657, 792, 837
GsaI CCCAGC 1 cut(s) 843
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 3 cut(s) 659, 744, 806
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 137
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 6 cut(s) 11, 310, 367, 488, 602, 623
HphI GGTGA 4 cut(s) 22, 215, 250, 698
Hpy166II GTNNAC 4 cut(s) 18, 145, 396, 689
Hpy188I TCNGA 2 cut(s) 10, 237
Hpy188III TCNNGA 6 cut(s) 75, 162, 509, 680, 797, 878
Hpy8I GTNNAC 4 cut(s) 18, 145, 396, 689
HpyAV CCTTC 7 cut(s) 207, 475, 520, 586, 610, 733, 886
HpyCH4III ACNGT 2 cut(s) 22, 112
HpyCH4V TGCA 2 cut(s) 343, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 52
Hsp92I GRCGYC 1 cut(s) 137
HspAI GCGC 1 cut(s) 137
KasI GGCGCC 1 cut(s) 136
KpnI GGTACC 1 cut(s) 847
Kzo9I GATC 3 cut(s) 99, 164, 676
LmnI GCTCC 2 cut(s) 237, 595
Lsp1109I GCAGC 2 cut(s) 778, 848
LweI GCATC 1 cut(s) 774
MaeI CTAG 3 cut(s) 95, 692, 848
MaeIII GTNAC 4 cut(s) 22, 55, 106, 256
MalI GATC 3 cut(s) 101, 166, 678
MbiI CCGCTC 2 cut(s) 240, 598
MboI GATC 3 cut(s) 99, 164, 676
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 2 cut(s) 228, 703
MluCI AATT 4 cut(s) 4, 502, 760, 860
Mly113I GGCGCC 1 cut(s) 137
MlyI GAGTC 6 cut(s) 20, 319, 376, 482, 596, 632
MmeI TCCRAC 1 cut(s) 630
MseI TTAA 1 cut(s) 629
MspA1I CMGCKG 1 cut(s) 839
MspR9I CCNGG 7 cut(s) 37, 38, 318, 354, 550, 697, 929
MwoI GCNNNNNNNGC 1 cut(s) 237
NarI GGCGCC 1 cut(s) 137
NciI CCSGG 7 cut(s) 37, 38, 318, 354, 550, 697, 929
NdeII GATC 3 cut(s) 99, 164, 676
NlaIV GGNNCC 5 cut(s) 138, 218, 292, 321, 845
NmeAIII GCCGAG 2 cut(s) 670, 685
NmuCI GTSAC 2 cut(s) 22, 256
PaeR7I CTCGAG 1 cut(s) 75
PceI AGGCCT 1 cut(s) 806
PcsI WCGNNNNNNNCGW 3 cut(s) 108, 181, 411
Pfl23II CGTACG 1 cut(s) 472
PfoI TCCNGGA 1 cut(s) 316
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 3 cut(s) 658, 793, 838
PleI GAGTC 6 cut(s) 19, 318, 375, 482, 596, 631
PluTI GGCGCC 1 cut(s) 140
PpsI GAGTC 6 cut(s) 19, 318, 375, 482, 596, 631
PpuMI RGGWCCY 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 290
PspEI GGTNACC 2 cut(s) 106, 256
PspFI CCCAGC 1 cut(s) 839
PspLI CGTACG 1 cut(s) 472
PspN4I GGNNCC 5 cut(s) 138, 218, 292, 321, 845
PspPI GGNCC 2 cut(s) 290, 320
PspPPI RGGWCCY 1 cut(s) 290
PsuI RGATCY 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 839
RsaI GTAC 6 cut(s) 19, 146, 404, 474, 821, 845
RsaNI GTAC 6 cut(s) 18, 145, 403, 473, 820, 844
SaqAI TTAA 1 cut(s) 629
SatI GCNGC 3 cut(s) 657, 792, 837
Sau3AI GATC 3 cut(s) 99, 164, 676
Sau96I GGNCC 2 cut(s) 290, 320
SchI GAGTC 6 cut(s) 20, 319, 376, 482, 596, 632
ScrFI CCNGG 7 cut(s) 37, 38, 318, 354, 550, 697, 929
SduI GDGCHC 2 cut(s) 228, 703
SfaNI GCATC 1 cut(s) 774
SfoI GGCGCC 1 cut(s) 138
Sfr274I CTCGAG 1 cut(s) 75
SgrAI CRCCGGYG 1 cut(s) 139
SinI GGWCC 2 cut(s) 290, 320
SlaI CTCGAG 1 cut(s) 75
SmaI CCCGGG 1 cut(s) 38
SmlI CTYRAG 4 cut(s) 75, 680, 795, 878
SmoI CTYRAG 4 cut(s) 75, 680, 795, 878
Sse9I AATT 4 cut(s) 4, 502, 760, 860
SseBI AGGCCT 1 cut(s) 806
SsiI CCGC 7 cut(s) 33, 229, 240, 598, 656, 738, 868
SspDI GGCGCC 1 cut(s) 136
SspMI CTAG 3 cut(s) 95, 692, 848
StuI AGGCCT 1 cut(s) 806
StyD4I CCNGG 7 cut(s) 35, 36, 316, 352, 548, 695, 927
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 2 cut(s) 22, 112
TaqI TCGA 4 cut(s) 76, 117, 459, 465
TaqII GACCGA 2 cut(s) 337, 413
TasI AATT 4 cut(s) 4, 502, 760, 860
TatI WGTACW 1 cut(s) 819
TauI GCSGC 1 cut(s) 659
Tru1I TTAA 1 cut(s) 629
Tru9I TTAA 1 cut(s) 629
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 2 cut(s) 22, 256
TseI GCWGC 2 cut(s) 791, 836
Tsp45I GTSAC 2 cut(s) 22, 256
TspDTI ATGAA 3 cut(s) 17, 830, 867
TspMI CCCGGG 1 cut(s) 36
TspRI CASTG 1 cut(s) 396
VpaK11BI GGWCC 2 cut(s) 290, 320
XagI CCTNNNNNAGG 1 cut(s) 610
XapI RAATTY 3 cut(s) 4, 760, 860
XhoI CTCGAG 1 cut(s) 75
XmaI CCCGGG 1 cut(s) 36
XspI CTAG 3 cut(s) 95, 692, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.