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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 414 |
| AccB1I | GGYRCC | 1 cut(s) | 414 |
| AccBSI | CCGCTC | 1 cut(s) | 310 |
| AciI | CCGC | 4 cut(s) | 115, 281, 310, 439 |
| AcsI | RAATTY | 2 cut(s) | 68, 431 |
| AfaI | GTAC | 3 cut(s) | 50, 392, 416 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 121, 127, 229, 265, 435 |
| AgsI | TTSAA | 2 cut(s) | 229, 452 |
| AjnI | CCWGG | 2 cut(s) | 108, 417 |
| AluBI | AGCT | 1 cut(s) | 37 |
| AluI | AGCT | 1 cut(s) | 37 |
| Ama87I | CYCGRG | 1 cut(s) | 348 |
| AoxI | GGCC | 2 cut(s) | 123, 375 |
| ApeKI | GCWGC | 4 cut(s) | 4, 34, 37, 407 |
| ApoI | RAATTY | 2 cut(s) | 68, 431 |
| Asp718I | GGTACC | 1 cut(s) | 414 |
| AspLEI | GCGC | 1 cut(s) | 181 |
| AspS9I | GGNCC | 3 cut(s) | 91, 112, 123 |
| AsuC2I | CCSGG | 4 cut(s) | 122, 349, 350, 412 |
| AvaI | CYCGRG | 1 cut(s) | 348 |
| AvaII | GGWCC | 2 cut(s) | 91, 112 |
| BanI | GGYRCC | 1 cut(s) | 414 |
| BanII | GRGCYC | 1 cut(s) | 349 |
| BbsI | GAAGAC | 1 cut(s) | 437 |
| BbvI | GCAGC | 3 cut(s) | 24, 46, 419 |
| BccI | CCATC | 1 cut(s) | 206 |
| BceAI | ACGGC | 1 cut(s) | 362 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 150, 184 |
| BciT130I | CCWGG | 2 cut(s) | 110, 419 |
| BciVI | GTATCC | 1 cut(s) | 211 |
| BcnI | CCSGG | 4 cut(s) | 122, 349, 350, 412 |
| BfoI | RGCGCY | 1 cut(s) | 182 |
| BfuI | GTATCC | 1 cut(s) | 211 |
| BisI | GCNGC | 5 cut(s) | 5, 35, 38, 282, 408 |
| BlsI | GCNGC | 5 cut(s) | 6, 36, 39, 283, 409 |
| Bme1390I | CCNGG | 6 cut(s) | 110, 122, 349, 350, 412, 419 |
| Bme18I | GGWCC | 2 cut(s) | 91, 112 |
| BmeT110I | CYCGRG | 1 cut(s) | 348 |
| BmgT120I | GGNCC | 3 cut(s) | 91, 112, 123 |
| BmiI | GGNNCC | 2 cut(s) | 92, 416 |
| BmrFI | CCNGG | 6 cut(s) | 110, 122, 349, 350, 412, 419 |
| BmrI | ACTGGG | 1 cut(s) | 309 |
| BmsI | GCATC | 3 cut(s) | 72, 126, 193 |
| BmuI | ACTGGG | 1 cut(s) | 309 |
| BpiI | GAAGAC | 1 cut(s) | 437 |
| BpmI | CTGGAG | 1 cut(s) | 296 |
| BpuEI | CTTGAG | 2 cut(s) | 80, 326 |
| BpuMI | CCSGG | 4 cut(s) | 122, 349, 350, 412 |
| Bsa29I | ATCGAT | 1 cut(s) | 201 |
| BsaJI | CCNNGG | 3 cut(s) | 126, 261, 348 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 121, 127, 229, 265, 435 |
| Bse118I | RCCGGY | 1 cut(s) | 7 |
| Bse1I | ACTGG | 2 cut(s) | 279, 304 |
| BseBI | CCWGG | 2 cut(s) | 110, 419 |
| BseCI | ATCGAT | 1 cut(s) | 201 |
| BseDI | CCNNGG | 3 cut(s) | 126, 261, 348 |
| BseGI | GGATG | 3 cut(s) | 117, 337, 427 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 121, 127, 229, 265, 435 |
| BseMII | CTCAG | 1 cut(s) | 348 |
| BseNI | ACTGG | 2 cut(s) | 279, 304 |
| BseRI | GAGGAG | 1 cut(s) | 227 |
| BseXI | GCAGC | 3 cut(s) | 24, 46, 419 |
| BshFI | GGCC | 2 cut(s) | 125, 377 |
| BshNI | GGYRCC | 1 cut(s) | 414 |
| BshVI | ATCGAT | 1 cut(s) | 201 |
| BsiHKCI | CYCGRG | 1 cut(s) | 348 |
| BsiSI | CCGG | 4 cut(s) | 8, 121, 349, 411 |
| BslFI | GGGAC | 2 cut(s) | 104, 365 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 121, 127, 229, 265, 435 |
| BsmFI | GGGAC | 2 cut(s) | 104, 365 |
| BsnI | GGCC | 2 cut(s) | 125, 377 |
| BsoBI | CYCGRG | 1 cut(s) | 348 |
| Bsp1286I | GDGCHC | 1 cut(s) | 349 |
| Bsp143I | GATC | 2 cut(s) | 27, 294 |
| BspACI | CCGC | 4 cut(s) | 115, 281, 310, 439 |
| BspANI | GGCC | 2 cut(s) | 125, 377 |
| BspCNI | CTCAG | 1 cut(s) | 349 |
| BspDI | ATCGAT | 1 cut(s) | 201 |
| BspLI | GGNNCC | 2 cut(s) | 92, 416 |
| BspT107I | GGYRCC | 1 cut(s) | 414 |
| BsrBI | CCGCTC | 1 cut(s) | 310 |
| BsrFI | RCCGGY | 1 cut(s) | 7 |
| BsrI | ACTGG | 2 cut(s) | 279, 304 |
| BssAI | RCCGGY | 1 cut(s) | 7 |
| BssECI | CCNNGG | 3 cut(s) | 126, 261, 348 |
| BssMI | GATC | 2 cut(s) | 27, 294 |
| BssT1I | CCWWGG | 2 cut(s) | 126, 261 |
| Bst2UI | CCWGG | 2 cut(s) | 110, 419 |
| Bst4CI | ACNGT | 1 cut(s) | 53 |
| BstC8I | GCNNGC | 2 cut(s) | 159, 208 |
| BstDEI | CTNAG | 2 cut(s) | 357, 474 |
| BstF5I | GGATG | 3 cut(s) | 117, 337, 427 |
| BstH2I | RGCGCY | 1 cut(s) | 182 |
| BstHHI | GCGC | 1 cut(s) | 181 |
| BstKTI | GATC | 2 cut(s) | 30, 297 |
| BstMBI | GATC | 2 cut(s) | 27, 294 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 203 |
| BstNI | CCWGG | 2 cut(s) | 110, 419 |
| BstSCI | CCNGG | 6 cut(s) | 108, 120, 347, 348, 410, 417 |
| BstV1I | GCAGC | 3 cut(s) | 24, 46, 419 |
| BstV2I | GAAGAC | 1 cut(s) | 437 |
| Bsu15I | ATCGAT | 1 cut(s) | 201 |
| BsuI | GTATCC | 1 cut(s) | 211 |
| BsuRI | GGCC | 2 cut(s) | 125, 377 |
| BsuTUI | ATCGAT | 1 cut(s) | 201 |
| BtsCI | GGATG | 3 cut(s) | 117, 337, 427 |
| BtsIMutI | CAGTG | 1 cut(s) | 297 |
| Cac8I | GCNNGC | 2 cut(s) | 159, 208 |
| CfoI | GCGC | 1 cut(s) | 181 |
| Cfr10I | RCCGGY | 1 cut(s) | 7 |
| Cfr13I | GGNCC | 3 cut(s) | 91, 112, 123 |
| Cfr9I | CCCGGG | 1 cut(s) | 348 |
| ClaI | ATCGAT | 1 cut(s) | 201 |
| Csp6I | GTAC | 3 cut(s) | 49, 391, 415 |
| CviQI | GTAC | 3 cut(s) | 49, 391, 415 |
| DdeI | CTNAG | 2 cut(s) | 357, 474 |
| DpnI | GATC | 2 cut(s) | 29, 296 |
| DpnII | GATC | 2 cut(s) | 27, 294 |
| Eco130I | CCWWGG | 2 cut(s) | 126, 261 |
| Eco24I | GRGCYC | 1 cut(s) | 349 |
| Eco47I | GGWCC | 2 cut(s) | 91, 112 |
| Eco88I | CYCGRG | 1 cut(s) | 348 |
| EcoO109I | RGGNCCY | 1 cut(s) | 91 |
| EcoRII | CCWGG | 2 cut(s) | 108, 417 |
| EcoT14I | CCWWGG | 2 cut(s) | 126, 261 |
| EcoT38I | GRGCYC | 1 cut(s) | 349 |
| ErhI | CCWWGG | 2 cut(s) | 126, 261 |
| FaiI | YATR | 3 cut(s) | 20, 184, 195 |
| FaqI | GGGAC | 2 cut(s) | 104, 365 |
| FauI | CCCGC | 2 cut(s) | 303, 432 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 35, 38, 282, 408 |
| FokI | GGATG | 3 cut(s) | 104, 344, 434 |
| FriOI | GRGCYC | 1 cut(s) | 349 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 35, 38, 282, 408 |
| GlaI | GCGC | 1 cut(s) | 180 |
| GluI | GCNGC | 5 cut(s) | 5, 35, 38, 282, 408 |
| GsuI | CTGGAG | 1 cut(s) | 296 |
| HaeII | RGCGCY | 1 cut(s) | 182 |
| HaeIII | GGCC | 2 cut(s) | 125, 377 |
| HapII | CCGG | 4 cut(s) | 8, 121, 349, 411 |
| HhaI | GCGC | 1 cut(s) | 181 |
| Hin6I | GCGC | 1 cut(s) | 179 |
| HinP1I | GCGC | 1 cut(s) | 179 |
| HinfI | GANTC | 3 cut(s) | 167, 248, 353 |
| HpaII | CCGG | 4 cut(s) | 8, 121, 349, 411 |
| Hpy188I | TCNGA | 2 cut(s) | 46, 358 |
| Hpy188III | TCNNGA | 1 cut(s) | 449 |
| HpyAV | CCTTC | 2 cut(s) | 230, 235 |
| HpyCH4III | ACNGT | 1 cut(s) | 53 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 203 |
| HpyF3I | CTNAG | 2 cut(s) | 357, 474 |
| HspAI | GCGC | 1 cut(s) | 179 |
| KpnI | GGTACC | 1 cut(s) | 418 |
| Kzo9I | GATC | 2 cut(s) | 27, 294 |
| Lsp1109I | GCAGC | 3 cut(s) | 24, 46, 419 |
| LweI | GCATC | 3 cut(s) | 72, 126, 193 |
| MalI | GATC | 2 cut(s) | 29, 296 |
| MbiI | CCGCTC | 1 cut(s) | 310 |
| MboI | GATC | 2 cut(s) | 27, 294 |
| MboII | GAAGA | 3 cut(s) | 298, 437, 469 |
| MhlI | GDGCHC | 1 cut(s) | 349 |
| MluCI | AATT | 2 cut(s) | 68, 431 |
| MlyI | GAGTC | 3 cut(s) | 176, 257, 347 |
| MseI | TTAA | 2 cut(s) | 338, 387 |
| MspA1I | CMGCKG | 1 cut(s) | 37 |
| MspI | CCGG | 4 cut(s) | 8, 121, 349, 411 |
| MspR9I | CCNGG | 6 cut(s) | 110, 122, 349, 350, 412, 419 |
| MvaI | CCWGG | 2 cut(s) | 110, 419 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 203 |
| NciI | CCSGG | 4 cut(s) | 122, 349, 350, 412 |
| NdeII | GATC | 2 cut(s) | 27, 294 |
| NlaIV | GGNNCC | 2 cut(s) | 92, 416 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 207 |
| PkrI | GCNGC | 5 cut(s) | 6, 36, 39, 283, 409 |
| PleI | GAGTC | 3 cut(s) | 175, 256, 347 |
| PpsI | GAGTC | 3 cut(s) | 175, 256, 347 |
| PpuMI | RGGWCCY | 1 cut(s) | 91 |
| Psp5II | RGGWCCY | 1 cut(s) | 91 |
| Psp6I | CCWGG | 2 cut(s) | 108, 417 |
| PspGI | CCWGG | 2 cut(s) | 108, 417 |
| PspN4I | GGNNCC | 2 cut(s) | 92, 416 |
| PspPI | GGNCC | 3 cut(s) | 91, 112, 123 |
| PspPPI | RGGWCCY | 1 cut(s) | 91 |
| PvuII | CAGCTG | 1 cut(s) | 37 |
| RsaI | GTAC | 3 cut(s) | 50, 392, 416 |
| RsaNI | GTAC | 3 cut(s) | 49, 391, 415 |
| SaqAI | TTAA | 2 cut(s) | 338, 387 |
| SatI | GCNGC | 5 cut(s) | 5, 35, 38, 282, 408 |
| Sau3AI | GATC | 2 cut(s) | 27, 294 |
| Sau96I | GGNCC | 3 cut(s) | 91, 112, 123 |
| SchI | GAGTC | 3 cut(s) | 176, 257, 347 |
| ScrFI | CCNGG | 6 cut(s) | 110, 122, 349, 350, 412, 419 |
| SduI | GDGCHC | 1 cut(s) | 349 |
| SetI | ASST | 7 cut(s) | 39, 80, 96, 111, 246, 267, 420 |
| SfaNI | GCATC | 3 cut(s) | 72, 126, 193 |
| SinI | GGWCC | 2 cut(s) | 91, 112 |
| SmaI | CCCGGG | 1 cut(s) | 350 |
| SmlI | CTYRAG | 2 cut(s) | 95, 305 |
| SmoI | CTYRAG | 2 cut(s) | 95, 305 |
| Sse9I | AATT | 2 cut(s) | 68, 431 |
| SsiI | CCGC | 4 cut(s) | 115, 281, 310, 439 |
| StyD4I | CCNGG | 6 cut(s) | 108, 120, 347, 348, 410, 417 |
| StyI | CCWWGG | 2 cut(s) | 126, 261 |
| TaaI | ACNGT | 1 cut(s) | 53 |
| TaqI | TCGA | 4 cut(s) | 80, 105, 170, 201 |
| TasI | AATT | 2 cut(s) | 68, 431 |
| TatI | WGTACW | 1 cut(s) | 390 |
| TauI | GCSGC | 1 cut(s) | 284 |
| Tru1I | TTAA | 2 cut(s) | 338, 387 |
| Tru9I | TTAA | 2 cut(s) | 338, 387 |
| TscAI | CASTG | 1 cut(s) | 304 |
| TseI | GCWGC | 4 cut(s) | 4, 34, 37, 407 |
| TspDTI | ATGAA | 2 cut(s) | 35, 438 |
| TspMI | CCCGGG | 1 cut(s) | 348 |
| TspRI | CASTG | 1 cut(s) | 304 |
| VpaK11BI | GGWCC | 2 cut(s) | 91, 112 |
| XapI | RAATTY | 2 cut(s) | 68, 431 |
| XmaI | CCCGGG | 1 cut(s) | 348 |