Rmu_sc0004140.1_g000028

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004140.1
OG0000087
Physical Location & Seq
Forward (+)
114134 .. 116308
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004140.1_g000028.1.cds

Sequence Viewer

Length: 1734 bp
atggaatcagaagataggggtggggatatgggatcatcgtaccagtcctctgccctgcaagctgaggtggatatcgaccggtacttaggccgggtagaccaattagcagagaacacggggtcctcgactggggtgttctcggagagtagtgaggagtccaacgagggtgagagcgagggtggatccgcggaggccccggtagtcacagtggccattcccgagggcattccgaagccgaggtacacacttacggacgggaccgtatgcgacgaacccgggagaagtatgacaatgaacgagatcatcgccatgcgactgaggtggggaataccagaagcggtggagcttaggcttcttagggatggagagacggccgcgaatcctgccccggggtgggtggcgctgcacgagaatcagctccaccaagggttatcgctacccctgccccggtgcctacaatatttgctgcggatgctgaacctgtcaccagggcagctgaccccgaatgccgttcgtcaaatgtatagtatgatggctatgtgggacttgtgccagcaagggctagggttagggtggctccccgtgaaagcgccgaagaggaaaccccggaaaggcaaggaggaggacaagatggatgatgcccaactgatggacatgttgatgggccagggagaagatgccctgcacatcgacgtcgacctagggtcgaaaggtacgagtcggtccattgaagagacccttctggagatcaccgatgagggatacggtgaacctgaccccgatgctcccgtgacccacgtcgcgcagccctccttggccgatgttatcacaatagatgacaccggaatgggaaaagtacctgtcctaatgcctattacctctcgttccactgggagcgatgaggtgttactccccggtgagaagaagagatcccacaggcaccggtatcgaactgataaggaggtgacgtacactagccgggatgtccaggagtcgtcgccttctcttggcttgttatctcccgccattccggtaatccccaagaagcccatcaagcagctgctgagtgagtacggggttgtcgatgaaaagtccgtgtggtccatgcttggggatctgaaggatattgacctcgaccgggtttgggccaaagataatactccccaggagaatcgccgtctcgcccgggaatcaatgatgcgggcactcttcaatgtatacgccattgatgccagcgaggaagatactcatctgaaggaggaggttagcaatctctccgggcaggtgaagtatcttcatggcgagaaggccaagctagagaaggagcgggactcattgagggctcagatggccgcctctaagcagcggattgcggagcttgaaggtgaggttactgaggcgcgggaagaggtaaagaacgcccgggactccgagaagaaggctgcagagtctgccttttcatggaaggagaaggcagaccatctggaggatcgccttcccgcggagaggcacgaggccgtggaggagtacaagtcctcagatgagctcatctctatgctggctgctgcccaagataaggctgtcatcatgaagtttaaggagtgggtggcggtcgggtatttagatgaggccaaattcaggcagggtctcctggagaaaaagaagaaggatcgggaggcggcggccaagtctggtgccggtgggtctcagagtaccggaggcgatcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

577

Amino Acids

63.82

Weight (kDa)

4.99

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1273
AatII GACGTC 1 cut(s) 696
Acc36I ACCTGC 1 cut(s) 1273
AccB1I GGYRCC 3 cut(s) 450, 939, 1694
AccB7I CCANNNNNTGG 1 cut(s) 649
AccBSI CCGCTC 1 cut(s) 1327
AccI GTMKAC 3 cut(s) 96, 696, 1218
AccII CGCG 5 cut(s) 188, 377, 803, 1402, 1502
AclWI GGATC 7 cut(s) 40, 177, 190, 924, 1122, 1497, 1677
AcoI YGGCCR 5 cut(s) 210, 372, 816, 1350, 1683
AcsI RAATTY 1 cut(s) 1634
AcuI CTGAAG 2 cut(s) 1139, 1274
AcyI GRCGYC 1 cut(s) 693
AfaI GTAC 9 cut(s) 41, 83, 242, 715, 858, 971, 1073, 1529, 1714
AflIII ACRYGT 1 cut(s) 654
AgeI ACCGGT 2 cut(s) 78, 942
AgsI TTSAA 3 cut(s) 731, 1213, 1382
AhdI GACNNNNNGTC 1 cut(s) 703
AjiI CACGTC 1 cut(s) 799
AjnI CCWGG 5 cut(s) 487, 666, 987, 1164, 1650
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
AluBI AGCT 8 cut(s) 62, 346, 418, 496, 1060, 1315, 1378, 1546
AluI AGCT 8 cut(s) 62, 346, 418, 496, 1060, 1315, 1378, 1546
Alw21I GWGCWC 1 cut(s) 1548
Alw26I GTCTC 5 cut(s) 362, 728, 1184, 1652, 1710
AlwI GGATC 7 cut(s) 40, 177, 190, 924, 1122, 1497, 1677
AlwNI CAGNNNCTG 2 cut(s) 1063, 1451
Ama87I CYCGRG 5 cut(s) 218, 275, 388, 1185, 1422
ApoI RAATTY 1 cut(s) 1634
AsiGI ACCGGT 2 cut(s) 78, 942
AspA2I CCTAGG 1 cut(s) 700
AspLEI GCGC 4 cut(s) 403, 592, 805, 1402
AspS9I GGNCC 7 cut(s) 120, 193, 258, 664, 723, 1101, 1146
AsuHPI GGTGA 8 cut(s) 179, 477, 742, 779, 929, 976, 1297, 1397
AvaI CYCGRG 5 cut(s) 218, 275, 388, 1185, 1422
AvaII GGWCC 4 cut(s) 120, 258, 723, 1101
AvrII CCTAGG 1 cut(s) 700
BaeGI GKGCMC 1 cut(s) 1207
BalI TGGCCA 1 cut(s) 212
BamHI GGATCC 1 cut(s) 182
BanI GGYRCC 3 cut(s) 450, 939, 1694
BanII GRGCYC 2 cut(s) 1345, 1548
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
BauI CACGAG 2 cut(s) 407, 1511
Bbv12I GWGCWC 1 cut(s) 1548
BbvCI CCTCAGC 1 cut(s) 63
BccI CCATC 8 cut(s) 356, 526, 625, 643, 655, 1058, 1342, 1488
BceAI ACGGC 4 cut(s) 387, 494, 1161, 1502
BcgI CGANNNNNNTGC 2 cut(s) 929, 963
BciT130I CCWGG 5 cut(s) 489, 668, 989, 1166, 1652
BciVI GTATCC 1 cut(s) 755
BcoDI GTCTC 5 cut(s) 362, 728, 1184, 1652, 1710
BfaI CTAG 4 cut(s) 563, 701, 975, 1316
BfmI CTRYAG 1 cut(s) 1443
BfoI RGCGCY 2 cut(s) 404, 593
BfuAI ACCTGC 1 cut(s) 1273
BfuI GTATCC 1 cut(s) 755
BlnI CCTAGG 1 cut(s) 700
Bme18I GGWCC 4 cut(s) 120, 258, 723, 1101
BmeRI GACNNNNNGTC 1 cut(s) 703
BmeT110I CYCGRG 5 cut(s) 218, 275, 388, 1185, 1422
BmgBI CACGTC 1 cut(s) 799
BmgT120I GGNCC 7 cut(s) 120, 193, 258, 664, 723, 1101, 1146
BmiI GGNNCC 8 cut(s) 121, 184, 195, 259, 452, 578, 941, 1696
BmrI ACTGGG 2 cut(s) 138, 900
BmsI GCATC 6 cut(s) 462, 628, 667, 772, 1188, 1219
BmuI ACTGGG 2 cut(s) 138, 900
BoxI GACNNNNGTC 1 cut(s) 797
BplI GAGNNNNNCTC 4 cut(s) 1316, 1348, 1535, 1567
BpmI CTGGAG 3 cut(s) 764, 1505, 1673
Bpu10I CCTNAGC 2 cut(s) 63, 347
BsaBI GATNNNNATC 1 cut(s) 1248
BsaHI GRCGYC 1 cut(s) 693
BsaI GGTCTC 3 cut(s) 728, 1652, 1710
BsaWI WCCGGW 5 cut(s) 78, 842, 942, 1030, 1715
BsaXI ACNNNNNCTCC 4 cut(s) 953, 983, 1517, 1547
Bse118I RCCGGY 3 cut(s) 78, 942, 1697
Bse1I ACTGG 3 cut(s) 43, 133, 895
Bse8I GATNNNNATC 1 cut(s) 1248
BseBI CCWGG 5 cut(s) 489, 668, 989, 1166, 1652
BseGI GGATG 4 cut(s) 367, 477, 640, 988
BseJI GATNNNNATC 1 cut(s) 1248
BseMII CTCAG 7 cut(s) 54, 308, 1055, 1358, 1386, 1551, 1721
BseNI ACTGG 3 cut(s) 43, 133, 895
BseRI GAGGAG 4 cut(s) 167, 635, 1274, 1538
BseSI GKGCMC 1 cut(s) 1207
BseX3I CGGCCG 1 cut(s) 372
BsgI GTGCAG 2 cut(s) 389, 668
Bsh1236I CGCG 5 cut(s) 188, 377, 803, 1402, 1502
Bsh1285I CGRYCG 5 cut(s) 79, 375, 1138, 1614, 1726
BshNI GGYRCC 3 cut(s) 450, 939, 1694
BshTI ACCGGT 2 cut(s) 78, 942
BsiEI CGRYCG 5 cut(s) 79, 375, 1138, 1614, 1726
BsiHKAI GWGCWC 1 cut(s) 1548
BsiHKCI CYCGRG 5 cut(s) 218, 275, 388, 1185, 1422
BslFI GGGAC 4 cut(s) 271, 557, 1343, 1439
BsmAI GTCTC 5 cut(s) 362, 728, 1184, 1652, 1710
BsmBI CGTCTC 2 cut(s) 362, 1184
BsmFI GGGAC 4 cut(s) 271, 557, 1343, 1439
BsmI GAATGC 2 cut(s) 225, 511
Bso31I GGTCTC 3 cut(s) 728, 1652, 1710
BsoBI CYCGRG 5 cut(s) 218, 275, 388, 1185, 1422
Bsp1286I GDGCHC 3 cut(s) 1207, 1345, 1548
Bsp143I GATC 9 cut(s) 32, 182, 300, 747, 929, 1114, 1489, 1669, 1723
BspCNI CTCAG 7 cut(s) 55, 309, 1056, 1357, 1387, 1550, 1720
BspFNI CGCG 5 cut(s) 188, 377, 803, 1402, 1502
BspHI TCATGA 1 cut(s) 1587
BspLI GGNNCC 8 cut(s) 121, 184, 195, 259, 452, 578, 941, 1696
BspMAI CTGCAG 1 cut(s) 1447
BspMI ACCTGC 1 cut(s) 1273
BspPI GGATC 7 cut(s) 40, 177, 190, 924, 1122, 1497, 1677
BspT107I GGYRCC 3 cut(s) 450, 939, 1694
BspTNI GGTCTC 3 cut(s) 728, 1652, 1710
BsrBI CCGCTC 1 cut(s) 1327
BsrFI RCCGGY 3 cut(s) 78, 942, 1697
BsrI ACTGG 3 cut(s) 43, 133, 895
BssAI RCCGGY 3 cut(s) 78, 942, 1697
BssMI GATC 9 cut(s) 32, 182, 300, 747, 929, 1114, 1489, 1669, 1723
BssNAI GTATAC 1 cut(s) 1219
BssNI GRCGYC 1 cut(s) 693
BssSI CACGAG 2 cut(s) 407, 1511
BssT1I CCWWGG 3 cut(s) 424, 700, 813
Bst1107I GTATAC 1 cut(s) 1219
Bst2BI CACGAG 2 cut(s) 407, 1511
Bst2UI CCWGG 5 cut(s) 489, 668, 989, 1166, 1652
Bst4CI ACNGT 3 cut(s) 208, 262, 767
Bst6I CTCTTC 5 cut(s) 590, 726, 920, 1214, 1401
BstACI GRCGYC 1 cut(s) 693
BstAPI GCANNNNNTGC 1 cut(s) 1451
BstC8I GCNNGC 5 cut(s) 60, 554, 1203, 1234, 1560
BstDSI CCRYGG 3 cut(s) 186, 1500, 1518
BstF5I GGATG 4 cut(s) 367, 477, 640, 988
BstFNI CGCG 5 cut(s) 188, 377, 803, 1402, 1502
BstH2I RGCGCY 2 cut(s) 404, 593
BstHHI GCGC 4 cut(s) 403, 592, 805, 1402
BstKTI GATC 9 cut(s) 35, 185, 303, 750, 932, 1117, 1492, 1672, 1726
BstMAI GTCTC 5 cut(s) 362, 728, 1184, 1652, 1710
BstMBI GATC 9 cut(s) 32, 182, 300, 747, 929, 1114, 1489, 1669, 1723
BstMCI CGRYCG 5 cut(s) 79, 375, 1138, 1614, 1726
BstMWI GCNNNNNNNGC 8 cut(s) 59, 383, 442, 472, 1054, 1229, 1349, 1451
BstNI CCWGG 5 cut(s) 489, 668, 989, 1166, 1652
BstNSI RCATGY 1 cut(s) 658
BstPAI GACNNNNGTC 1 cut(s) 797
BstSFI CTRYAG 1 cut(s) 1443
BstSLI GKGCMC 1 cut(s) 1207
BstUI CGCG 5 cut(s) 188, 377, 803, 1402, 1502
BstX2I RGATCY 3 cut(s) 182, 929, 1114
BstYI RGATCY 3 cut(s) 182, 929, 1114
BstZ17I GTATAC 1 cut(s) 1219
BstZI CGGCCG 1 cut(s) 372
BsuI GTATCC 1 cut(s) 755
BtgI CCRYGG 3 cut(s) 186, 1500, 1518
BtgZI GCGATG 2 cut(s) 289, 912
BtrI CACGTC 1 cut(s) 799
BtsCI GGATG 4 cut(s) 367, 477, 640, 988
BtsIMutI CAGTG 2 cut(s) 213, 888
BveI ACCTGC 1 cut(s) 1273
Cac8I GCNNGC 5 cut(s) 60, 554, 1203, 1234, 1560
CaiI CAGNNNCTG 2 cut(s) 1063, 1451
CciI TCATGA 1 cut(s) 1587
CfoI GCGC 4 cut(s) 403, 592, 805, 1402
Cfr10I RCCGGY 3 cut(s) 78, 942, 1697
Cfr13I GGNCC 7 cut(s) 120, 193, 258, 664, 723, 1101, 1146
Cfr42I CCGCGG 2 cut(s) 189, 1503
Cfr9I CCCGGG 4 cut(s) 275, 388, 1185, 1422
Csp6I GTAC 9 cut(s) 40, 82, 241, 714, 857, 970, 1072, 1528, 1713
CspAI ACCGGT 2 cut(s) 78, 942
CviAII CATG 6 cut(s) 310, 655, 1105, 1298, 1461, 1588
CviQI GTAC 9 cut(s) 40, 82, 241, 714, 857, 970, 1072, 1528, 1713
DpnI GATC 9 cut(s) 34, 184, 302, 749, 931, 1116, 1491, 1671, 1725
DpnII GATC 9 cut(s) 32, 182, 300, 747, 929, 1114, 1489, 1669, 1723
DriI GACNNNNNGTC 1 cut(s) 703
EaeI YGGCCR 5 cut(s) 210, 372, 816, 1350, 1683
EagI CGGCCG 1 cut(s) 372
Eam1104I CTCTTC 5 cut(s) 590, 726, 920, 1214, 1401
Eam1105I GACNNNNNGTC 1 cut(s) 703
EarI CTCTTC 5 cut(s) 590, 726, 920, 1214, 1401
Ecl136II GAGCTC 1 cut(s) 1546
EclXI CGGCCG 1 cut(s) 372
Eco130I CCWWGG 3 cut(s) 424, 700, 813
Eco24I GRGCYC 2 cut(s) 1345, 1548
Eco31I GGTCTC 3 cut(s) 728, 1652, 1710
Eco32I GATATC 1 cut(s) 73
Eco47I GGWCC 4 cut(s) 120, 258, 723, 1101
Eco52I CGGCCG 1 cut(s) 372
Eco53kI GAGCTC 1 cut(s) 1546
Eco57I CTGAAG 2 cut(s) 1139, 1274
Eco88I CYCGRG 5 cut(s) 218, 275, 388, 1185, 1422
EcoICRI GAGCTC 1 cut(s) 1546
EcoO109I RGGNCCY 2 cut(s) 120, 193
EcoRII CCWGG 5 cut(s) 487, 666, 987, 1164, 1650
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 3 cut(s) 424, 700, 813
EcoT38I GRGCYC 2 cut(s) 1345, 1548
ErhI CCWWGG 3 cut(s) 424, 700, 813
Esp3I CGTCTC 2 cut(s) 362, 1184
FaeI CATG 6 cut(s) 313, 658, 1108, 1301, 1464, 1591
FalI AAGNNNNNCTT 2 cut(s) 723, 755
FaqI GGGAC 4 cut(s) 271, 557, 1343, 1439
FatI CATG 6 cut(s) 309, 654, 1104, 1297, 1460, 1587
FauI CCCGC 5 cut(s) 1030, 1194, 1320, 1395, 1507
FblI GTMKAC 3 cut(s) 96, 696, 1218
FokI GGATG 4 cut(s) 374, 484, 647, 995
FriOI GRGCYC 2 cut(s) 1345, 1548
FspBI CTAG 4 cut(s) 563, 701, 975, 1316
GlaI GCGC 4 cut(s) 402, 591, 804, 1401
GsuI CTGGAG 3 cut(s) 764, 1505, 1673
HaeII RGCGCY 2 cut(s) 404, 593
HhaI GCGC 4 cut(s) 403, 592, 805, 1402
Hin1I GRCGYC 1 cut(s) 693
Hin1II CATG 6 cut(s) 313, 658, 1108, 1301, 1464, 1591
Hin6I GCGC 4 cut(s) 401, 590, 803, 1400
HinP1I GCGC 4 cut(s) 401, 590, 803, 1400
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HphI GGTGA 8 cut(s) 179, 477, 742, 779, 929, 976, 1297, 1397
Hpy166II GTNNAC 6 cut(s) 97, 243, 697, 770, 972, 1219
Hpy188I TCNGA 9 cut(s) 10, 142, 231, 1119, 1254, 1347, 1432, 1540, 1710
Hpy188III TCNNGA 5 cut(s) 218, 743, 1484, 1588, 1673
Hpy8I GTNNAC 6 cut(s) 97, 243, 697, 770, 972, 1219
Hpy99I CGWCG 5 cut(s) 272, 695, 698, 803, 1000
HpyCH4III ACNGT 3 cut(s) 208, 262, 767
HpyCH4IV ACGT 3 cut(s) 693, 798, 968
HpyCH4V TGCA 4 cut(s) 58, 406, 685, 1445
HpyF10VI GCNNNNNNNGC 8 cut(s) 59, 383, 442, 472, 1054, 1229, 1349, 1451
HpySE526I ACGT 3 cut(s) 693, 798, 968
Hsp92I GRCGYC 1 cut(s) 693
Hsp92II CATG 6 cut(s) 313, 658, 1108, 1301, 1464, 1591
HspAI GCGC 4 cut(s) 401, 590, 803, 1400
KspI CCGCGG 2 cut(s) 189, 1503
Kzo9I GATC 9 cut(s) 32, 182, 300, 747, 929, 1114, 1489, 1669, 1723
LmnI GCTCC 7 cut(s) 343, 423, 582, 790, 894, 1324, 1375
LweI GCATC 6 cut(s) 462, 628, 667, 772, 1188, 1219
MaeI CTAG 4 cut(s) 563, 701, 975, 1316
MaeII ACGT 3 cut(s) 693, 798, 968
MaeIII GTNAC 6 cut(s) 202, 483, 790, 906, 964, 1390
MalI GATC 9 cut(s) 34, 184, 302, 749, 931, 1116, 1491, 1671, 1725
MbiI CCGCTC 1 cut(s) 1327
MboI GATC 9 cut(s) 32, 182, 300, 747, 929, 1114, 1489, 1669, 1723
MflI RGATCY 3 cut(s) 182, 929, 1114
MhlI GDGCHC 3 cut(s) 1207, 1345, 1548
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 2 cut(s) 101, 1634
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 6 cut(s) 164, 727, 1001, 1325, 1421, 1457
MmeI TCCRAC 1 cut(s) 183
Mox20I TGGCCA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 212
MseI TTAA 1 cut(s) 1596
MslI CAYNNNNRTG 4 cut(s) 308, 659, 845, 1553
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 5 cut(s) 188, 496, 1060, 1366, 1502
Mva1269I GAATGC 2 cut(s) 225, 511
MvaI CCWGG 5 cut(s) 489, 668, 989, 1166, 1652
MvnI CGCG 5 cut(s) 188, 377, 803, 1402, 1502
MwoI GCNNNNNNNGC 8 cut(s) 59, 383, 442, 472, 1054, 1229, 1349, 1451
NdeII GATC 9 cut(s) 32, 182, 300, 747, 929, 1114, 1489, 1669, 1723
NlaIII CATG 6 cut(s) 313, 658, 1108, 1301, 1464, 1591
NlaIV GGNNCC 8 cut(s) 121, 184, 195, 259, 452, 578, 941, 1696
NmeAIII GCCGAG 1 cut(s) 261
NmuCI GTSAC 4 cut(s) 202, 483, 790, 964
NspI RCATGY 1 cut(s) 658
PagI TCATGA 1 cut(s) 1587
PaqCI CACCTGC 1 cut(s) 1273
PciI ACATGT 1 cut(s) 654
PcsI WCGNNNNNNNCGW 3 cut(s) 122, 713, 1080
PctI GAATGC 2 cut(s) 225, 511
PfeI GAWTC 5 cut(s) 5, 379, 412, 1171, 1190
PflMI CCANNNNNTGG 1 cut(s) 649
PfoI TCCNGGA 2 cut(s) 987, 1650
PinAI ACCGGT 2 cut(s) 78, 942
Ple19I CGATCG 1 cut(s) 1726
PleI GAGTC 6 cut(s) 163, 726, 1000, 1325, 1421, 1456
PpsI GAGTC 6 cut(s) 163, 726, 1000, 1325, 1421, 1456
PpuMI RGGWCCY 1 cut(s) 120
PscI ACATGT 1 cut(s) 654
PshAI GACNNNNGTC 1 cut(s) 797
Psp124BI GAGCTC 1 cut(s) 1548
Psp5II RGGWCCY 1 cut(s) 120
Psp6I CCWGG 5 cut(s) 487, 666, 987, 1164, 1650
PspGI CCWGG 5 cut(s) 487, 666, 987, 1164, 1650
PspN4I GGNNCC 8 cut(s) 121, 184, 195, 259, 452, 578, 941, 1696
PspPI GGNCC 7 cut(s) 120, 193, 258, 664, 723, 1101, 1146
PspPPI RGGWCCY 1 cut(s) 120
PstI CTGCAG 1 cut(s) 1447
PstNI CAGNNNCTG 2 cut(s) 1063, 1451
PsuI RGATCY 3 cut(s) 182, 929, 1114
PvuI CGATCG 1 cut(s) 1726
PvuII CAGCTG 2 cut(s) 496, 1060
RsaI GTAC 9 cut(s) 41, 83, 242, 715, 858, 971, 1073, 1529, 1714
RsaNI GTAC 9 cut(s) 40, 82, 241, 714, 857, 970, 1072, 1528, 1713
RseI CAYNNNNRTG 4 cut(s) 308, 659, 845, 1553
SacI GAGCTC 1 cut(s) 1548
SacII CCGCGG 2 cut(s) 189, 1503
SalI GTCGAC 1 cut(s) 695
SaqAI TTAA 1 cut(s) 1596
Sau3AI GATC 9 cut(s) 32, 182, 300, 747, 929, 1114, 1489, 1669, 1723
Sau96I GGNCC 7 cut(s) 120, 193, 258, 664, 723, 1101, 1146
SchI GAGTC 6 cut(s) 164, 727, 1001, 1325, 1421, 1457
SduI GDGCHC 3 cut(s) 1207, 1345, 1548
SfaNI GCATC 6 cut(s) 462, 628, 667, 772, 1188, 1219
SfcI CTRYAG 1 cut(s) 1443
Sfr303I CCGCGG 2 cut(s) 189, 1503
SgrBI CCGCGG 2 cut(s) 189, 1503
SinI GGWCC 4 cut(s) 120, 258, 723, 1101
SmaI CCCGGG 4 cut(s) 277, 390, 1187, 1424
SmiMI CAYNNNNRTG 4 cut(s) 308, 659, 845, 1553
Sse9I AATT 2 cut(s) 101, 1634
SspI AATATT 1 cut(s) 461
SspMI CTAG 4 cut(s) 563, 701, 975, 1316
SstI GAGCTC 1 cut(s) 1548
StyI CCWWGG 3 cut(s) 424, 700, 813
TaaI ACNGT 3 cut(s) 208, 262, 767
TaiI ACGT 3 cut(s) 696, 801, 971
TaqI TCGA 8 cut(s) 75, 125, 690, 696, 707, 949, 1083, 1134
TaqII GACCGA 1 cut(s) 711
TasI AATT 2 cut(s) 101, 1634
TatI WGTACW 1 cut(s) 1527
TauI GCSGC 4 cut(s) 377, 1355, 1682, 1685
TfiI GAWTC 5 cut(s) 5, 379, 412, 1171, 1190
Tru1I TTAA 1 cut(s) 1596
Tru9I TTAA 1 cut(s) 1596
TscAI CASTG 2 cut(s) 213, 895
TseFI GTSAC 4 cut(s) 202, 483, 790, 964
Tsp45I GTSAC 4 cut(s) 202, 483, 790, 964
TspDTI ATGAA 5 cut(s) 308, 1101, 1286, 1449, 1604
TspGWI ACGGA 2 cut(s) 266, 1084
TspMI CCCGGG 4 cut(s) 275, 388, 1185, 1422
TspRI CASTG 2 cut(s) 213, 895
Van91I CCANNNNNTGG 1 cut(s) 649
VpaK11BI GGWCC 4 cut(s) 120, 258, 723, 1101
XapI RAATTY 1 cut(s) 1634
XceI RCATGY 1 cut(s) 658
XmaI CCCGGG 4 cut(s) 275, 388, 1185, 1422
XmaJI CCTAGG 1 cut(s) 700
XmiI GTMKAC 3 cut(s) 96, 696, 1218
XspI CTAG 4 cut(s) 563, 701, 975, 1316
ZraI GACGTC 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.