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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 8, 58 |
| AciI | CCGC | 3 cut(s) | 12, 77, 253 |
| AcsI | RAATTY | 1 cut(s) | 127 |
| AcyI | GRCGYC | 1 cut(s) | 9 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 95, 96, 295 |
| Ama87I | CYCGRG | 1 cut(s) | 215 |
| AoxI | GGCC | 1 cut(s) | 171 |
| ApeKI | GCWGC | 1 cut(s) | 51 |
| ApoI | RAATTY | 1 cut(s) | 127 |
| AspLEI | GCGC | 1 cut(s) | 11 |
| AspS9I | GGNCC | 2 cut(s) | 172, 206 |
| AsuC2I | CCSGG | 5 cut(s) | 56, 97, 119, 204, 257 |
| AsuHPI | GGTGA | 3 cut(s) | 85, 254, 269 |
| AvaI | CYCGRG | 1 cut(s) | 215 |
| AvaII | GGWCC | 1 cut(s) | 206 |
| BanI | GGYRCC | 2 cut(s) | 8, 58 |
| BanII | GRGCYC | 1 cut(s) | 271 |
| BauI | CACGAG | 1 cut(s) | 15 |
| BbvI | GCAGC | 1 cut(s) | 38 |
| BccI | CCATC | 2 cut(s) | 134, 186 |
| BcnI | CCSGG | 5 cut(s) | 56, 97, 119, 204, 257 |
| BfoI | RGCGCY | 1 cut(s) | 12 |
| BisI | GCNGC | 2 cut(s) | 12, 52 |
| BlsI | GCNGC | 2 cut(s) | 13, 53 |
| Bme1390I | CCNGG | 5 cut(s) | 56, 97, 119, 204, 257 |
| Bme18I | GGWCC | 1 cut(s) | 206 |
| BmeT110I | CYCGRG | 1 cut(s) | 215 |
| BmgT120I | GGNCC | 2 cut(s) | 172, 206 |
| BmiI | GGNNCC | 4 cut(s) | 10, 27, 60, 207 |
| BmrFI | CCNGG | 5 cut(s) | 56, 97, 119, 204, 257 |
| BmsI | GCATC | 1 cut(s) | 70 |
| BpuMI | CCSGG | 5 cut(s) | 56, 97, 119, 204, 257 |
| BsaHI | GRCGYC | 1 cut(s) | 9 |
| BsaJI | CCNNGG | 3 cut(s) | 32, 96, 256 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 95, 96, 295 |
| Bse118I | RCCGGY | 1 cut(s) | 22 |
| BseDI | CCNNGG | 3 cut(s) | 32, 96, 256 |
| BseGI | GGATG | 1 cut(s) | 85 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 95, 96, 295 |
| BseXI | GCAGC | 1 cut(s) | 38 |
| BshFI | GGCC | 1 cut(s) | 173 |
| BshNI | GGYRCC | 2 cut(s) | 8, 58 |
| BsiHKCI | CYCGRG | 1 cut(s) | 215 |
| BsiSI | CCGG | 6 cut(s) | 23, 56, 96, 119, 203, 256 |
| BslFI | GGGAC | 3 cut(s) | 165, 251, 273 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 95, 96, 295 |
| BsmFI | GGGAC | 3 cut(s) | 165, 251, 273 |
| BsmI | GAATGC | 1 cut(s) | 119 |
| BsnI | GGCC | 1 cut(s) | 173 |
| BsoBI | CYCGRG | 1 cut(s) | 215 |
| Bsp1286I | GDGCHC | 1 cut(s) | 271 |
| BspACI | CCGC | 3 cut(s) | 12, 77, 253 |
| BspANI | GGCC | 1 cut(s) | 173 |
| BspLI | GGNNCC | 4 cut(s) | 10, 27, 60, 207 |
| BspT107I | GGYRCC | 2 cut(s) | 8, 58 |
| BsrFI | RCCGGY | 1 cut(s) | 22 |
| BssAI | RCCGGY | 1 cut(s) | 22 |
| BssECI | CCNNGG | 3 cut(s) | 32, 96, 256 |
| BssNI | GRCGYC | 1 cut(s) | 9 |
| BssSI | CACGAG | 1 cut(s) | 15 |
| BssT1I | CCWWGG | 1 cut(s) | 32 |
| Bst2BI | CACGAG | 1 cut(s) | 15 |
| Bst4CI | ACNGT | 3 cut(s) | 67, 226, 242 |
| BstACI | GRCGYC | 1 cut(s) | 9 |
| BstF5I | GGATG | 1 cut(s) | 85 |
| BstH2I | RGCGCY | 1 cut(s) | 12 |
| BstHHI | GCGC | 1 cut(s) | 11 |
| BstSCI | CCNGG | 5 cut(s) | 54, 95, 117, 202, 255 |
| BstV1I | GCAGC | 1 cut(s) | 38 |
| BsuRI | GGCC | 1 cut(s) | 173 |
| BtsCI | GGATG | 1 cut(s) | 85 |
| CfoI | GCGC | 1 cut(s) | 11 |
| Cfr10I | RCCGGY | 1 cut(s) | 22 |
| Cfr13I | GGNCC | 2 cut(s) | 172, 206 |
| CviAII | CATG | 1 cut(s) | 137 |
| CviJI | RGCY | 4 cut(s) | 26, 38, 173, 269 |
| CviKI_1 | RGCY | 4 cut(s) | 26, 38, 173, 269 |
| DinI | GGCGCC | 1 cut(s) | 10 |
| EciI | GGCGGA | 1 cut(s) | 242 |
| Eco130I | CCWWGG | 1 cut(s) | 32 |
| Eco24I | GRGCYC | 1 cut(s) | 271 |
| Eco47I | GGWCC | 1 cut(s) | 206 |
| Eco88I | CYCGRG | 1 cut(s) | 215 |
| EcoO109I | RGGNCCY | 1 cut(s) | 206 |
| EcoT14I | CCWWGG | 1 cut(s) | 32 |
| EcoT38I | GRGCYC | 1 cut(s) | 271 |
| EgeI | GGCGCC | 1 cut(s) | 10 |
| EheI | GGCGCC | 1 cut(s) | 10 |
| ErhI | CCWWGG | 1 cut(s) | 32 |
| FaeI | CATG | 1 cut(s) | 140 |
| FaiI | YATR | 4 cut(s) | 138, 147, 212, 285 |
| FaqI | GGGAC | 3 cut(s) | 165, 251, 273 |
| FatI | CATG | 1 cut(s) | 136 |
| Fnu4HI | GCNGC | 2 cut(s) | 12, 52 |
| FokI | GGATG | 1 cut(s) | 92 |
| FriOI | GRGCYC | 1 cut(s) | 271 |
| Fsp4HI | GCNGC | 2 cut(s) | 12, 52 |
| GlaI | GCGC | 1 cut(s) | 10 |
| GluI | GCNGC | 2 cut(s) | 12, 52 |
| HaeII | RGCGCY | 1 cut(s) | 12 |
| HaeIII | GGCC | 1 cut(s) | 173 |
| HapII | CCGG | 6 cut(s) | 23, 56, 96, 119, 203, 256 |
| HhaI | GCGC | 1 cut(s) | 11 |
| Hin1I | GRCGYC | 1 cut(s) | 9 |
| Hin1II | CATG | 1 cut(s) | 140 |
| Hin6I | GCGC | 1 cut(s) | 9 |
| HinP1I | GCGC | 1 cut(s) | 9 |
| HincII | GTYRAC | 1 cut(s) | 106 |
| HindII | GTYRAC | 1 cut(s) | 106 |
| HpaII | CCGG | 6 cut(s) | 23, 56, 96, 119, 203, 256 |
| HphI | GGTGA | 3 cut(s) | 85, 254, 269 |
| Hpy166II | GTNNAC | 2 cut(s) | 106, 200 |
| Hpy188I | TCNGA | 2 cut(s) | 192, 298 |
| Hpy8I | GTNNAC | 2 cut(s) | 106, 200 |
| HpyCH4III | ACNGT | 3 cut(s) | 67, 226, 242 |
| Hsp92I | GRCGYC | 1 cut(s) | 9 |
| Hsp92II | CATG | 1 cut(s) | 140 |
| HspAI | GCGC | 1 cut(s) | 9 |
| KasI | GGCGCC | 1 cut(s) | 8 |
| LmnI | GCTCC | 2 cut(s) | 31, 298 |
| LpnPI | CCDG | 6 cut(s) | 36, 69, 109, 132, 216, 269 |
| Lsp1109I | GCAGC | 1 cut(s) | 38 |
| LweI | GCATC | 1 cut(s) | 70 |
| MaeIII | GTNAC | 3 cut(s) | 43, 91, 242 |
| MhlI | GDGCHC | 1 cut(s) | 271 |
| MluCI | AATT | 1 cut(s) | 127 |
| Mly113I | GGCGCC | 1 cut(s) | 9 |
| MnlI | CCTC | 5 cut(s) | 211, 282, 298, 302, 304 |
| MseI | TTAA | 1 cut(s) | 164 |
| MslI | CAYNNNNRTG | 1 cut(s) | 282 |
| MspI | CCGG | 6 cut(s) | 23, 56, 96, 119, 203, 256 |
| MspR9I | CCNGG | 5 cut(s) | 56, 97, 119, 204, 257 |
| Mva1269I | GAATGC | 1 cut(s) | 119 |
| NarI | GGCGCC | 1 cut(s) | 9 |
| NciI | CCSGG | 5 cut(s) | 56, 97, 119, 204, 257 |
| NlaIII | CATG | 1 cut(s) | 140 |
| NlaIV | GGNNCC | 4 cut(s) | 10, 27, 60, 207 |
| NmuCI | GTSAC | 2 cut(s) | 91, 242 |
| PaeR7I | CTCGAG | 1 cut(s) | 215 |
| PctI | GAATGC | 1 cut(s) | 119 |
| PkrI | GCNGC | 2 cut(s) | 13, 53 |
| PluTI | GGCGCC | 1 cut(s) | 12 |
| PpuMI | RGGWCCY | 1 cut(s) | 206 |
| Psp5II | RGGWCCY | 1 cut(s) | 206 |
| PspN4I | GGNNCC | 4 cut(s) | 10, 27, 60, 207 |
| PspPI | GGNCC | 2 cut(s) | 172, 206 |
| PspPPI | RGGWCCY | 1 cut(s) | 206 |
| PspXI | VCTCGAGB | 1 cut(s) | 215 |
| RseI | CAYNNNNRTG | 1 cut(s) | 282 |
| SaqAI | TTAA | 1 cut(s) | 164 |
| SatI | GCNGC | 2 cut(s) | 12, 52 |
| Sau96I | GGNCC | 2 cut(s) | 172, 206 |
| ScrFI | CCNGG | 5 cut(s) | 56, 97, 119, 204, 257 |
| SduI | GDGCHC | 1 cut(s) | 271 |
| SetI | ASST | 2 cut(s) | 294, 309 |
| SfaNI | GCATC | 1 cut(s) | 70 |
| SfoI | GGCGCC | 1 cut(s) | 10 |
| Sfr274I | CTCGAG | 1 cut(s) | 215 |
| SinI | GGWCC | 1 cut(s) | 206 |
| SlaI | CTCGAG | 1 cut(s) | 215 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 282 |
| SmlI | CTYRAG | 1 cut(s) | 215 |
| SmoI | CTYRAG | 1 cut(s) | 215 |
| Sse9I | AATT | 1 cut(s) | 127 |
| SsiI | CCGC | 3 cut(s) | 12, 77, 253 |
| SspDI | GGCGCC | 1 cut(s) | 8 |
| StyD4I | CCNGG | 5 cut(s) | 54, 95, 117, 202, 255 |
| StyI | CCWWGG | 1 cut(s) | 32 |
| TaaI | ACNGT | 3 cut(s) | 67, 226, 242 |
| TaqI | TCGA | 1 cut(s) | 216 |
| TasI | AATT | 1 cut(s) | 127 |
| TauI | GCSGC | 1 cut(s) | 14 |
| Tru1I | TTAA | 1 cut(s) | 164 |
| Tru9I | TTAA | 1 cut(s) | 164 |
| TseFI | GTSAC | 2 cut(s) | 91, 242 |
| TseI | GCWGC | 1 cut(s) | 51 |
| Tsp45I | GTSAC | 2 cut(s) | 91, 242 |
| VpaK11BI | GGWCC | 1 cut(s) | 206 |
| XapI | RAATTY | 1 cut(s) | 127 |
| XhoI | CTCGAG | 1 cut(s) | 215 |