Rmu_sc0004365.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004365.1
OG0000087
Physical Location & Seq
Reverse (-)
37814 .. 39396
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004365.1_g000012.1.cds

Sequence Viewer

Length: 1449 bp
atggccgtgaatcctgccccggggtgggtggcgctgcacgagaatcagctccaccaagggttatcgctacccctgccccggtgcctacagtatctgttgcggatgctgaacctgtcaccggggcagctgacccctaatgccgttcgccaaatgtatagtatgatggccatgtgggacttgtgccagcaagggtggccttccataaatgagttctgcgcggtacacagggtactgtactctaggaagcagtcttgtgcggtgaaagcccagaagaggaaaccccggaaaggcaaggaggaggacaggatggatgatacccaactgatggacatgctgatgggccagggagaagatgctctgcacatcgatgtcgacctagggtcgaaaggcacgagtcggtctattgaagagacccttttggagatcagcgatgagggatacggtgaacctgatcccgacgcccctgtgacccacaccgtgcagccctccatggtcgatgtcattacaatagatgacaccggaatgggaaaagtaccggcctcagtgcctatctcctctcgttccactgggagcgatgaggcgttactccccggtgagaagaagagatcccacaggcaccatcgaactgataaggaggtgacgtacactggccgggatgtccagggtactggtacgaagagacagaagaaagatcacccgggatcagggctgtcgccttctcttggcctgttatctcccgtcgttccggtaatccccaagaagcccatcaagcagctgctgaatgaatacggggttgccgatgaaaagttcgtgcggtccatgcttggggatctgaaggatattgacctcgaccgggttcgagccaaagataatactccccaggagaatcgccgtctcgcccaggaatcaatgatgcgggcactcttcaatgtgtacgccatcgacgccagcgaggaagatactcatctgaaggaggaggttagcaatctctccgggcaggtgaagtatcttcatggcgagaaggccaagctggagaaggagcgggactcattgagggctgagatggccacctctaagcagcggattgcggagcttgagggtgaggttactgatgcgcgggaggaggtaaagaacgcccgggattccgagaaaaaggctgcggagtctgccgtctcatggaaggagaaggcagaccatctggaggatcgccttcccgcggagaggcacgaggccgtggaggagtacaagtcctcggataagcttatctccatgctggctgctgcccaagataaggttgtcatcatgaagtttaaggagtgggtggcggccgggtacttagatgaagccaaatttaggcggggtctcctggagaaaaagaagaaagagcgggaggcggcggccaagtccggtgccgatgggtctcagagtaccgatggagatcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

482

Amino Acids

53.86

Weight (kDa)

6.17

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 988
Acc36I ACCTGC 1 cut(s) 988
AccB1I GGYRCC 3 cut(s) 81, 615, 1409
AccB7I CCANNNNNTGG 1 cut(s) 325
AccBSI CCGCTC 2 cut(s) 1042, 1387
AccI GTMKAC 1 cut(s) 372
AccII CGCG 3 cut(s) 218, 1117, 1217
AclWI GGATC 5 cut(s) 446, 600, 709, 837, 1212
AcoI YGGCCR 6 cut(s) 3, 165, 649, 1065, 1326, 1398
AcsI RAATTY 1 cut(s) 1349
AcuI CTGAAG 2 cut(s) 854, 989
AcyI GRCGYC 2 cut(s) 459, 945
AdeI CACNNNGTG 1 cut(s) 478
AgsI TTSAA 2 cut(s) 407, 928
AhdI GACNNNNNGTC 1 cut(s) 379
AjnI CCWGG 5 cut(s) 342, 660, 879, 900, 1365
AluBI AGCT 6 cut(s) 49, 127, 775, 1030, 1093, 1261
AluI AGCT 6 cut(s) 49, 127, 775, 1030, 1093, 1261
Alw26I GTCTC 6 cut(s) 404, 673, 899, 1177, 1367, 1425
AlwI GGATC 5 cut(s) 446, 600, 709, 837, 1212
AlwNI CAGNNNCTG 2 cut(s) 94, 778
Ama87I CYCGRG 3 cut(s) 19, 697, 1137
ApeKI GCWGC 9 cut(s) 34, 124, 481, 772, 775, 1078, 1157, 1277, 1280
ApoI RAATTY 1 cut(s) 1349
AspA2I CCTAGG 1 cut(s) 376
AspLEI GCGC 3 cut(s) 34, 218, 1117
AspS9I GGNCC 2 cut(s) 340, 816
AsuHPI GGTGA 8 cut(s) 108, 271, 455, 605, 649, 686, 1012, 1112
AvaI CYCGRG 3 cut(s) 19, 697, 1137
AvaII GGWCC 1 cut(s) 816
AvrII CCTAGG 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 922
BalI TGGCCA 2 cut(s) 167, 1067
BanI GGYRCC 3 cut(s) 81, 615, 1409
BauI CACGAG 3 cut(s) 38, 391, 1226
BbvI GCAGC 9 cut(s) 21, 136, 493, 762, 784, 1090, 1144, 1264, 1267
BceAI ACGGC 4 cut(s) 125, 876, 1154, 1217
BciT130I CCWGG 5 cut(s) 344, 662, 881, 902, 1367
BciVI GTATCC 1 cut(s) 431
BcoDI GTCTC 6 cut(s) 404, 673, 899, 1177, 1367, 1425
BfaI CTAG 2 cut(s) 240, 377
BfmI CTRYAG 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 988
BfuI GTATCC 1 cut(s) 431
BlnI CCTAGG 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 816
BmeRI GACNNNNNGTC 1 cut(s) 379
BmeT110I CYCGRG 3 cut(s) 19, 697, 1137
BmgT120I GGNCC 2 cut(s) 340, 816
BmiI GGNNCC 3 cut(s) 83, 617, 1411
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 4 cut(s) 93, 343, 903, 1102
BmuI ACTGGG 1 cut(s) 576
BplI GAGNNNNNCTC 2 cut(s) 1031, 1063
BpmI CTGGAG 3 cut(s) 1052, 1220, 1388
BpuEI CTTGAG 1 cut(s) 1115
Bsa29I ATCGAT 1 cut(s) 366
BsaBI GATNNNNATC 2 cut(s) 963, 1437
BsaHI GRCGYC 2 cut(s) 459, 945
BsaI GGTCTC 3 cut(s) 404, 1367, 1425
BsaWI WCCGGW 3 cut(s) 518, 745, 1406
BsaXI ACNNNNNCTCC 4 cut(s) 626, 656, 1232, 1262
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 3 cut(s) 571, 652, 673
Bse8I GATNNNNATC 2 cut(s) 963, 1437
BseBI CCWGG 5 cut(s) 344, 662, 881, 902, 1367
BseCI ATCGAT 1 cut(s) 366
BseGI GGATG 4 cut(s) 108, 312, 316, 661
BseJI GATNNNNATC 2 cut(s) 963, 1437
BseMII CTCAG 3 cut(s) 555, 1050, 1436
BseNI ACTGG 3 cut(s) 571, 652, 673
BseRI GAGGAG 5 cut(s) 311, 544, 989, 1136, 1253
BseSI GKGCMC 1 cut(s) 922
BseX3I CGGCCG 1 cut(s) 1326
BseXI GCAGC 9 cut(s) 21, 136, 493, 762, 784, 1090, 1144, 1264, 1267
BsgI GTGCAG 3 cut(s) 20, 344, 500
Bsh1236I CGCG 3 cut(s) 218, 1117, 1217
Bsh1285I CGRYCG 2 cut(s) 853, 1329
BshNI GGYRCC 3 cut(s) 81, 615, 1409
BshVI ATCGAT 1 cut(s) 366
BsiEI CGRYCG 2 cut(s) 853, 1329
BsiHKCI CYCGRG 3 cut(s) 19, 697, 1137
BslFI GGGAC 2 cut(s) 188, 1058
BsmAI GTCTC 6 cut(s) 404, 673, 899, 1177, 1367, 1425
BsmBI CGTCTC 2 cut(s) 899, 1177
BsmFI GGGAC 2 cut(s) 188, 1058
Bso31I GGTCTC 3 cut(s) 404, 1367, 1425
BsoBI CYCGRG 3 cut(s) 19, 697, 1137
Bsp1286I GDGCHC 1 cut(s) 922
Bsp143I GATC 8 cut(s) 423, 451, 605, 691, 701, 829, 1204, 1438
Bsp19I CCATGG 1 cut(s) 489
BspCNI CTCAG 3 cut(s) 554, 1051, 1435
BspDI ATCGAT 1 cut(s) 366
BspFNI CGCG 3 cut(s) 218, 1117, 1217
BspHI TCATGA 1 cut(s) 1302
BspLI GGNNCC 3 cut(s) 83, 617, 1411
BspMI ACCTGC 1 cut(s) 988
BspPI GGATC 5 cut(s) 446, 600, 709, 837, 1212
BspT107I GGYRCC 3 cut(s) 81, 615, 1409
BspTNI GGTCTC 3 cut(s) 404, 1367, 1425
BsrBI CCGCTC 2 cut(s) 1042, 1387
BsrFI RCCGGY 1 cut(s) 535
BsrI ACTGG 3 cut(s) 571, 652, 673
BssAI RCCGGY 1 cut(s) 535
BssMI GATC 8 cut(s) 423, 451, 605, 691, 701, 829, 1204, 1438
BssNI GRCGYC 2 cut(s) 459, 945
BssSI CACGAG 3 cut(s) 38, 391, 1226
BssT1I CCWWGG 3 cut(s) 55, 376, 489
Bst2BI CACGAG 3 cut(s) 38, 391, 1226
Bst2UI CCWGG 5 cut(s) 344, 662, 881, 902, 1367
Bst4CI ACNGT 4 cut(s) 90, 234, 443, 478
Bst6I CTCTTC 5 cut(s) 266, 402, 596, 671, 929
BstACI GRCGYC 2 cut(s) 459, 945
BstC8I GCNNGC 4 cut(s) 185, 918, 949, 1275
BstDEI CTNAG 5 cut(s) 541, 1059, 1074, 1336, 1422
BstDSI CCRYGG 3 cut(s) 489, 1215, 1233
BstF5I GGATG 4 cut(s) 108, 312, 316, 661
BstFNI CGCG 3 cut(s) 218, 1117, 1217
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 3 cut(s) 34, 218, 1117
BstKTI GATC 8 cut(s) 426, 454, 608, 694, 704, 832, 1207, 1441
BstMAI GTCTC 6 cut(s) 404, 673, 899, 1177, 1367, 1425
BstMBI GATC 8 cut(s) 423, 451, 605, 691, 701, 829, 1204, 1438
BstMCI CGRYCG 2 cut(s) 853, 1329
BstMWI GCNNNNNNNGC 8 cut(s) 73, 193, 263, 769, 820, 944, 1064, 1166
BstNI CCWGG 5 cut(s) 344, 662, 881, 902, 1367
BstNSI RCATGY 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 86
BstSLI GKGCMC 1 cut(s) 922
BstUI CGCG 3 cut(s) 218, 1117, 1217
BstV1I GCAGC 9 cut(s) 21, 136, 493, 762, 784, 1090, 1144, 1264, 1267
BstX2I RGATCY 2 cut(s) 605, 829
BstXI CCANNNNNNTGG 1 cut(s) 668
BstYI RGATCY 2 cut(s) 605, 829
BstZI CGGCCG 1 cut(s) 1326
Bsu15I ATCGAT 1 cut(s) 366
BsuI GTATCC 1 cut(s) 431
BsuTUI ATCGAT 1 cut(s) 366
BtgI CCRYGG 3 cut(s) 489, 1215, 1233
BtgZI GCGATG 2 cut(s) 444, 588
BtsCI GGATG 4 cut(s) 108, 312, 316, 661
BtsIMutI CAGTG 3 cut(s) 549, 564, 645
BveI ACCTGC 1 cut(s) 988
Cac8I GCNNGC 4 cut(s) 185, 918, 949, 1275
CaiI CAGNNNCTG 2 cut(s) 94, 778
CciI TCATGA 1 cut(s) 1302
CfoI GCGC 3 cut(s) 34, 218, 1117
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 2 cut(s) 340, 816
Cfr42I CCGCGG 1 cut(s) 1218
Cfr9I CCCGGG 3 cut(s) 19, 697, 1137
ClaI ATCGAT 1 cut(s) 366
CseI GACGC 2 cut(s) 467, 953
CviAII CATG 8 cut(s) 169, 331, 490, 820, 1013, 1176, 1270, 1303
DdeI CTNAG 5 cut(s) 541, 1059, 1074, 1336, 1422
DpnI GATC 8 cut(s) 425, 453, 607, 693, 703, 831, 1206, 1440
DpnII GATC 8 cut(s) 423, 451, 605, 691, 701, 829, 1204, 1438
DraIII CACNNNGTG 1 cut(s) 478
DriI GACNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 6 cut(s) 3, 165, 649, 1065, 1326, 1398
EagI CGGCCG 1 cut(s) 1326
Eam1104I CTCTTC 5 cut(s) 266, 402, 596, 671, 929
Eam1105I GACNNNNNGTC 1 cut(s) 379
EarI CTCTTC 5 cut(s) 266, 402, 596, 671, 929
EclXI CGGCCG 1 cut(s) 1326
Eco130I CCWWGG 3 cut(s) 55, 376, 489
Eco31I GGTCTC 3 cut(s) 404, 1367, 1425
Eco47I GGWCC 1 cut(s) 816
Eco52I CGGCCG 1 cut(s) 1326
Eco57I CTGAAG 2 cut(s) 854, 989
Eco88I CYCGRG 3 cut(s) 19, 697, 1137
EcoRII CCWGG 5 cut(s) 342, 660, 879, 900, 1365
EcoT14I CCWWGG 3 cut(s) 55, 376, 489
ErhI CCWWGG 3 cut(s) 55, 376, 489
Esp3I CGTCTC 2 cut(s) 899, 1177
FaeI CATG 8 cut(s) 172, 334, 493, 823, 1016, 1179, 1273, 1306
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FaqI GGGAC 2 cut(s) 188, 1058
FatI CATG 8 cut(s) 168, 330, 489, 819, 1012, 1175, 1269, 1302
FauI CCCGC 6 cut(s) 909, 1035, 1110, 1222, 1350, 1380
FblI GTMKAC 1 cut(s) 372
FokI GGATG 4 cut(s) 115, 319, 323, 668
FspBI CTAG 2 cut(s) 240, 377
GlaI GCGC 3 cut(s) 33, 217, 1116
GsuI CTGGAG 3 cut(s) 1052, 1220, 1388
HaeII RGCGCY 1 cut(s) 35
HgaI GACGC 2 cut(s) 467, 953
HhaI GCGC 3 cut(s) 34, 218, 1117
Hin1I GRCGYC 2 cut(s) 459, 945
Hin1II CATG 8 cut(s) 172, 334, 493, 823, 1016, 1179, 1273, 1306
Hin6I GCGC 3 cut(s) 32, 216, 1115
HinP1I GCGC 3 cut(s) 32, 216, 1115
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 1259
HinfI GANTC 8 cut(s) 10, 43, 394, 886, 905, 1046, 1142, 1163
HphI GGTGA 8 cut(s) 108, 271, 455, 605, 649, 686, 1012, 1112
Hpy166II GTNNAC 5 cut(s) 223, 373, 446, 645, 934
Hpy188I TCNGA 5 cut(s) 834, 969, 1147, 1255, 1425
Hpy188III TCNNGA 3 cut(s) 455, 1199, 1303
Hpy8I GTNNAC 5 cut(s) 223, 373, 446, 645, 934
Hpy99I CGWCG 3 cut(s) 461, 743, 947
HpyAV CCTTC 9 cut(s) 207, 726, 829, 964, 1015, 1030, 1174, 1180, 1220
HpyCH4III ACNGT 4 cut(s) 90, 234, 443, 478
HpyCH4IV ACGT 1 cut(s) 641
HpyCH4V TGCA 3 cut(s) 37, 361, 481
HpyF10VI GCNNNNNNNGC 8 cut(s) 73, 193, 263, 769, 820, 944, 1064, 1166
HpyF3I CTNAG 5 cut(s) 541, 1059, 1074, 1336, 1422
HpySE526I ACGT 1 cut(s) 641
Hsp92I GRCGYC 2 cut(s) 459, 945
Hsp92II CATG 8 cut(s) 172, 334, 493, 823, 1016, 1179, 1273, 1306
HspAI GCGC 3 cut(s) 32, 216, 1115
KspI CCGCGG 1 cut(s) 1218
Kzo9I GATC 8 cut(s) 423, 451, 605, 691, 701, 829, 1204, 1438
LmnI GCTCC 4 cut(s) 54, 570, 1039, 1090
Lsp1109I GCAGC 9 cut(s) 21, 136, 493, 762, 784, 1090, 1144, 1264, 1267
LweI GCATC 4 cut(s) 93, 343, 903, 1102
MaeI CTAG 2 cut(s) 240, 377
MaeII ACGT 1 cut(s) 641
MaeIII GTNAC 5 cut(s) 114, 466, 582, 637, 1105
MalI GATC 8 cut(s) 425, 453, 607, 693, 703, 831, 1206, 1440
MbiI CCGCTC 2 cut(s) 1042, 1387
MboI GATC 8 cut(s) 423, 451, 605, 691, 701, 829, 1204, 1438
MflI RGATCY 2 cut(s) 605, 829
MhlI GDGCHC 1 cut(s) 922
MlsI TGGCCA 2 cut(s) 167, 1067
MluCI AATT 1 cut(s) 1349
MluNI TGGCCA 2 cut(s) 167, 1067
MlyI GAGTC 3 cut(s) 403, 1040, 1172
Mox20I TGGCCA 2 cut(s) 167, 1067
MscI TGGCCA 2 cut(s) 167, 1067
MseI TTAA 1 cut(s) 1311
MslI CAYNNNNRTG 3 cut(s) 335, 366, 521
Msp20I TGGCCA 2 cut(s) 167, 1067
MspA1I CMGCKG 4 cut(s) 127, 775, 1081, 1217
MvaI CCWGG 5 cut(s) 344, 662, 881, 902, 1367
MvnI CGCG 3 cut(s) 218, 1117, 1217
MwoI GCNNNNNNNGC 8 cut(s) 73, 193, 263, 769, 820, 944, 1064, 1166
NcoI CCATGG 1 cut(s) 489
NdeII GATC 8 cut(s) 423, 451, 605, 691, 701, 829, 1204, 1438
NlaIII CATG 8 cut(s) 172, 334, 493, 823, 1016, 1179, 1273, 1306
NlaIV GGNNCC 3 cut(s) 83, 617, 1411
NmuCI GTSAC 3 cut(s) 114, 466, 637
NspI RCATGY 1 cut(s) 334
PagI TCATGA 1 cut(s) 1302
PaqCI CACCTGC 1 cut(s) 988
PcsI WCGNNNNNNNCGW 3 cut(s) 389, 795, 948
PfeI GAWTC 5 cut(s) 10, 43, 886, 905, 1142
PflMI CCANNNNNTGG 1 cut(s) 325
PfoI TCCNGGA 1 cut(s) 1365
PleI GAGTC 3 cut(s) 402, 1040, 1171
PpsI GAGTC 3 cut(s) 402, 1040, 1171
Psp6I CCWGG 5 cut(s) 342, 660, 879, 900, 1365
PspGI CCWGG 5 cut(s) 342, 660, 879, 900, 1365
PspN4I GGNNCC 3 cut(s) 83, 617, 1411
PspPI GGNCC 2 cut(s) 340, 816
PstNI CAGNNNCTG 2 cut(s) 94, 778
PsuI RGATCY 2 cut(s) 605, 829
PvuII CAGCTG 2 cut(s) 127, 775
RseI CAYNNNNRTG 3 cut(s) 335, 366, 521
SacII CCGCGG 1 cut(s) 1218
SalI GTCGAC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 1311
Sau3AI GATC 8 cut(s) 423, 451, 605, 691, 701, 829, 1204, 1438
Sau96I GGNCC 2 cut(s) 340, 816
SchI GAGTC 3 cut(s) 403, 1040, 1172
SduI GDGCHC 1 cut(s) 922
SfaNI GCATC 4 cut(s) 93, 343, 903, 1102
SfcI CTRYAG 1 cut(s) 86
Sfr303I CCGCGG 1 cut(s) 1218
SgrBI CCGCGG 1 cut(s) 1218
SinI GGWCC 1 cut(s) 816
SmaI CCCGGG 3 cut(s) 21, 699, 1139
SmiMI CAYNNNNRTG 3 cut(s) 335, 366, 521
SmlI CTYRAG 1 cut(s) 1094
SmoI CTYRAG 1 cut(s) 1094
Sse9I AATT 1 cut(s) 1349
SspMI CTAG 2 cut(s) 240, 377
StyI CCWWGG 3 cut(s) 55, 376, 489
TaaI ACNGT 4 cut(s) 90, 234, 443, 478
TaiI ACGT 1 cut(s) 644
TaqI TCGA 8 cut(s) 366, 372, 383, 495, 622, 849, 859, 942
TaqII GACCGA 1 cut(s) 387
TasI AATT 1 cut(s) 1349
TatI WGTACW 2 cut(s) 234, 1242
TauI GCSGC 3 cut(s) 1328, 1397, 1400
TfiI GAWTC 5 cut(s) 10, 43, 886, 905, 1142
Tru1I TTAA 1 cut(s) 1311
Tru9I TTAA 1 cut(s) 1311
TscAI CASTG 3 cut(s) 549, 571, 652
TseFI GTSAC 3 cut(s) 114, 466, 637
TseI GCWGC 9 cut(s) 34, 124, 481, 772, 775, 1078, 1157, 1277, 1280
Tsp45I GTSAC 3 cut(s) 114, 466, 637
TspDTI ATGAA 5 cut(s) 798, 816, 1001, 1319, 1356
TspMI CCCGGG 3 cut(s) 19, 697, 1137
TspRI CASTG 3 cut(s) 549, 571, 652
Van91I CCANNNNNTGG 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 816
XapI RAATTY 1 cut(s) 1349
XceI RCATGY 1 cut(s) 334
XmaI CCCGGG 3 cut(s) 19, 697, 1137
XmaJI CCTAGG 1 cut(s) 376
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 2 cut(s) 240, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.