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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 140 |
| AccB1I | GGYRCC | 1 cut(s) | 228 |
| AccBSI | CCGCTC | 1 cut(s) | 47 |
| AccIII | TCCGGA | 1 cut(s) | 19 |
| AciI | CCGC | 6 cut(s) | 45, 69, 72, 169, 243, 360 |
| AcoI | YGGCCR | 1 cut(s) | 177 |
| AcyI | GRCGYC | 1 cut(s) | 137 |
| AfaI | GTAC | 1 cut(s) | 146 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 23, 171, 175 |
| AluBI | AGCT | 1 cut(s) | 350 |
| AluI | AGCT | 1 cut(s) | 350 |
| Alw21I | GWGCWC | 2 cut(s) | 352, 410 |
| Alw26I | GTCTC | 1 cut(s) | 67 |
| Ama87I | CYCGRG | 3 cut(s) | 76, 290, 345 |
| Aor13HI | TCCGGA | 1 cut(s) | 19 |
| AoxI | GGCC | 2 cut(s) | 177, 355 |
| ApeKI | GCWGC | 2 cut(s) | 5, 199 |
| AspS9I | GGNCC | 1 cut(s) | 356 |
| AsuC2I | CCSGG | 1 cut(s) | 181 |
| AvaI | CYCGRG | 3 cut(s) | 76, 290, 345 |
| BanI | GGYRCC | 1 cut(s) | 228 |
| BanII | GRGCYC | 2 cut(s) | 297, 352 |
| BauI | CACGAG | 1 cut(s) | 36 |
| Bbv12I | GWGCWC | 2 cut(s) | 352, 410 |
| BbvI | GCAGC | 1 cut(s) | 186 |
| BccI | CCATC | 2 cut(s) | 93, 243 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 218, 252, 322, 356 |
| BcnI | CCSGG | 1 cut(s) | 181 |
| BcoDI | GTCTC | 1 cut(s) | 67 |
| BfaI | CTAG | 1 cut(s) | 204 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 301 |
| BisI | GCNGC | 3 cut(s) | 6, 72, 200 |
| BlsI | GCNGC | 3 cut(s) | 7, 73, 201 |
| Bme1390I | CCNGG | 1 cut(s) | 181 |
| BmeT110I | CYCGRG | 3 cut(s) | 76, 290, 345 |
| BmgT120I | GGNCC | 1 cut(s) | 356 |
| BmiI | GGNNCC | 2 cut(s) | 230, 358 |
| BmrFI | CCNGG | 1 cut(s) | 181 |
| BpuMI | CCSGG | 1 cut(s) | 181 |
| BsaHI | GRCGYC | 1 cut(s) | 137 |
| BsaJI | CCNNGG | 2 cut(s) | 53, 96 |
| BsaWI | WCCGGW | 1 cut(s) | 19 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 23, 171, 175 |
| Bse118I | RCCGGY | 2 cut(s) | 147, 171 |
| BseAI | TCCGGA | 1 cut(s) | 19 |
| BseDI | CCNNGG | 2 cut(s) | 53, 96 |
| BseGI | GGATG | 2 cut(s) | 85, 262 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 23, 171, 175 |
| BseRI | GAGGAG | 4 cut(s) | 6, 113, 203, 308 |
| BseX3I | CGGCCG | 1 cut(s) | 177 |
| BseXI | GCAGC | 1 cut(s) | 186 |
| Bsh1285I | CGRYCG | 2 cut(s) | 176, 180 |
| BshFI | GGCC | 2 cut(s) | 179, 357 |
| BshNI | GGYRCC | 1 cut(s) | 228 |
| BsiEI | CGRYCG | 2 cut(s) | 176, 180 |
| BsiHKAI | GWGCWC | 2 cut(s) | 352, 410 |
| BsiHKCI | CYCGRG | 3 cut(s) | 76, 290, 345 |
| BsiSI | CCGG | 4 cut(s) | 20, 148, 172, 180 |
| BslFI | GGGAC | 2 cut(s) | 289, 300 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 23, 171, 175 |
| BsmAI | GTCTC | 1 cut(s) | 67 |
| BsmBI | CGTCTC | 1 cut(s) | 67 |
| BsmFI | GGGAC | 2 cut(s) | 289, 300 |
| BsnI | GGCC | 2 cut(s) | 179, 357 |
| BsoBI | CYCGRG | 3 cut(s) | 76, 290, 345 |
| Bsp1286I | GDGCHC | 3 cut(s) | 297, 352, 410 |
| Bsp13I | TCCGGA | 1 cut(s) | 19 |
| BspACI | CCGC | 6 cut(s) | 45, 69, 72, 169, 243, 360 |
| BspANI | GGCC | 2 cut(s) | 179, 357 |
| BspEI | TCCGGA | 1 cut(s) | 19 |
| BspLI | GGNNCC | 2 cut(s) | 230, 358 |
| BspT107I | GGYRCC | 1 cut(s) | 228 |
| BsrBI | CCGCTC | 1 cut(s) | 47 |
| BsrFI | RCCGGY | 2 cut(s) | 147, 171 |
| BssAI | RCCGGY | 2 cut(s) | 147, 171 |
| BssECI | CCNNGG | 2 cut(s) | 53, 96 |
| BssNI | GRCGYC | 1 cut(s) | 137 |
| BssSI | CACGAG | 1 cut(s) | 36 |
| BssT1I | CCWWGG | 1 cut(s) | 53 |
| Bst2BI | CACGAG | 1 cut(s) | 36 |
| Bst4CI | ACNGT | 1 cut(s) | 124 |
| Bst6I | CTCTTC | 1 cut(s) | 209 |
| BstACI | GRCGYC | 1 cut(s) | 137 |
| BstC8I | GCNNGC | 2 cut(s) | 33, 406 |
| BstF5I | GGATG | 2 cut(s) | 85, 262 |
| BstMAI | GTCTC | 1 cut(s) | 67 |
| BstMCI | CGRYCG | 2 cut(s) | 176, 180 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 226, 301, 390, 414 |
| BstSCI | CCNGG | 1 cut(s) | 179 |
| BstV1I | GCAGC | 1 cut(s) | 186 |
| BstZI | CGGCCG | 1 cut(s) | 177 |
| BsuRI | GGCC | 2 cut(s) | 179, 357 |
| BtsCI | GGATG | 2 cut(s) | 85, 262 |
| Cac8I | GCNNGC | 2 cut(s) | 33, 406 |
| Cfr10I | RCCGGY | 2 cut(s) | 147, 171 |
| Cfr13I | GGNCC | 1 cut(s) | 356 |
| Csp6I | GTAC | 1 cut(s) | 145 |
| CviJI | RGCY | 9 cut(s) | 5, 31, 151, 179, 194, 295, 350, 357, 384 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 31, 151, 179, 194, 295, 350, 357, 384 |
| CviQI | GTAC | 1 cut(s) | 145 |
| EaeI | YGGCCR | 1 cut(s) | 177 |
| EagI | CGGCCG | 1 cut(s) | 177 |
| Eam1104I | CTCTTC | 1 cut(s) | 209 |
| EarI | CTCTTC | 1 cut(s) | 209 |
| EciI | GGCGGA | 1 cut(s) | 158 |
| Ecl136II | GAGCTC | 1 cut(s) | 350 |
| EclXI | CGGCCG | 1 cut(s) | 177 |
| Eco130I | CCWWGG | 1 cut(s) | 53 |
| Eco24I | GRGCYC | 2 cut(s) | 297, 352 |
| Eco52I | CGGCCG | 1 cut(s) | 177 |
| Eco53kI | GAGCTC | 1 cut(s) | 350 |
| Eco88I | CYCGRG | 3 cut(s) | 76, 290, 345 |
| EcoICRI | GAGCTC | 1 cut(s) | 350 |
| EcoT14I | CCWWGG | 1 cut(s) | 53 |
| EcoT38I | GRGCYC | 2 cut(s) | 297, 352 |
| ErhI | CCWWGG | 1 cut(s) | 53 |
| Esp3I | CGTCTC | 1 cut(s) | 67 |
| FaiI | YATR | 3 cut(s) | 156, 225, 267 |
| FaqI | GGGAC | 2 cut(s) | 289, 300 |
| FauI | CCCGC | 3 cut(s) | 52, 236, 367 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 72, 200 |
| FokI | GGATG | 2 cut(s) | 72, 269 |
| FriOI | GRGCYC | 2 cut(s) | 297, 352 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 72, 200 |
| FspBI | CTAG | 1 cut(s) | 204 |
| GluI | GCNGC | 3 cut(s) | 6, 72, 200 |
| HaeIII | GGCC | 2 cut(s) | 179, 357 |
| HapII | CCGG | 4 cut(s) | 20, 148, 172, 180 |
| Hin1I | GRCGYC | 1 cut(s) | 137 |
| HinfI | GANTC | 1 cut(s) | 288 |
| HpaII | CCGG | 4 cut(s) | 20, 148, 172, 180 |
| Hpy166II | GTNNAC | 1 cut(s) | 145 |
| Hpy188I | TCNGA | 2 cut(s) | 323, 369 |
| Hpy188III | TCNNGA | 1 cut(s) | 20 |
| Hpy8I | GTNNAC | 1 cut(s) | 145 |
| Hpy99I | CGWCG | 2 cut(s) | 142, 344 |
| HpyAV | CCTTC | 1 cut(s) | 266 |
| HpyCH4III | ACNGT | 1 cut(s) | 124 |
| HpyCH4IV | ACGT | 2 cut(s) | 137, 278 |
| HpyCH4V | TGCA | 1 cut(s) | 8 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 226, 301, 390, 414 |
| HpySE526I | ACGT | 2 cut(s) | 137, 278 |
| Hsp92I | GRCGYC | 1 cut(s) | 137 |
| Kpn2I | TCCGGA | 1 cut(s) | 19 |
| LmnI | GCTCC | 2 cut(s) | 52, 183 |
| LpnPI | CCDG | 4 cut(s) | 33, 161, 185, 193 |
| Lsp1109I | GCAGC | 1 cut(s) | 186 |
| MaeI | CTAG | 1 cut(s) | 204 |
| MaeII | ACGT | 2 cut(s) | 137, 278 |
| MaeIII | GTNAC | 3 cut(s) | 80, 106, 259 |
| MbiI | CCGCTC | 1 cut(s) | 47 |
| MboII | GAAGA | 3 cut(s) | 151, 223, 226 |
| MfeI | CAATTG | 1 cut(s) | 394 |
| MhlI | GDGCHC | 3 cut(s) | 297, 352, 410 |
| MluCI | AATT | 1 cut(s) | 394 |
| MlyI | GAGTC | 1 cut(s) | 282 |
| MroI | TCCGGA | 1 cut(s) | 19 |
| MseI | TTAA | 1 cut(s) | 281 |
| MspI | CCGG | 4 cut(s) | 20, 148, 172, 180 |
| MspR9I | CCNGG | 1 cut(s) | 181 |
| MunI | CAATTG | 1 cut(s) | 394 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 226, 301, 390, 414 |
| NciI | CCSGG | 1 cut(s) | 181 |
| NlaIV | GGNNCC | 2 cut(s) | 230, 358 |
| NmeAIII | GCCGAG | 1 cut(s) | 121 |
| NmuCI | GTSAC | 3 cut(s) | 80, 106, 259 |
| PaeR7I | CTCGAG | 3 cut(s) | 76, 290, 345 |
| PkrI | GCNGC | 3 cut(s) | 7, 73, 201 |
| PleI | GAGTC | 1 cut(s) | 282 |
| PpsI | GAGTC | 1 cut(s) | 282 |
| Psp124BI | GAGCTC | 1 cut(s) | 352 |
| PspN4I | GGNNCC | 2 cut(s) | 230, 358 |
| PspPI | GGNCC | 1 cut(s) | 356 |
| PspXI | VCTCGAGB | 3 cut(s) | 76, 290, 345 |
| RsaI | GTAC | 1 cut(s) | 146 |
| RsaNI | GTAC | 1 cut(s) | 145 |
| SacI | GAGCTC | 1 cut(s) | 352 |
| SaqAI | TTAA | 1 cut(s) | 281 |
| SatI | GCNGC | 3 cut(s) | 6, 72, 200 |
| Sau96I | GGNCC | 1 cut(s) | 356 |
| SchI | GAGTC | 1 cut(s) | 282 |
| ScrFI | CCNGG | 1 cut(s) | 181 |
| SduI | GDGCHC | 3 cut(s) | 297, 352, 410 |
| SetI | ASST | 4 cut(s) | 140, 266, 281, 352 |
| Sfr274I | CTCGAG | 3 cut(s) | 76, 290, 345 |
| SlaI | CTCGAG | 3 cut(s) | 76, 290, 345 |
| SmlI | CTYRAG | 3 cut(s) | 76, 290, 345 |
| SmoI | CTYRAG | 3 cut(s) | 76, 290, 345 |
| Sse9I | AATT | 1 cut(s) | 394 |
| SsiI | CCGC | 6 cut(s) | 45, 69, 72, 169, 243, 360 |
| SspMI | CTAG | 1 cut(s) | 204 |
| SstI | GAGCTC | 1 cut(s) | 352 |
| StyD4I | CCNGG | 1 cut(s) | 179 |
| StyI | CCWWGG | 1 cut(s) | 53 |
| TaaI | ACNGT | 1 cut(s) | 124 |
| TaiI | ACGT | 2 cut(s) | 140, 281 |
| TaqI | TCGA | 5 cut(s) | 77, 238, 291, 346, 400 |
| TasI | AATT | 1 cut(s) | 394 |
| TauI | GCSGC | 1 cut(s) | 74 |
| Tru1I | TTAA | 1 cut(s) | 281 |
| Tru9I | TTAA | 1 cut(s) | 281 |
| TseFI | GTSAC | 3 cut(s) | 80, 106, 259 |
| TseI | GCWGC | 2 cut(s) | 5, 199 |
| Tsp45I | GTSAC | 3 cut(s) | 80, 106, 259 |
| TspGWI | ACGGA | 1 cut(s) | 154 |
| XhoI | CTCGAG | 3 cut(s) | 76, 290, 345 |
| XspI | CTAG | 1 cut(s) | 204 |
| ZraI | GACGTC | 1 cut(s) | 138 |