Rmu_sc0000194.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000194.1
OG0000087
Physical Location & Seq
Forward (+)
5870 .. 8381
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000194.1_g000003.1.cds

Sequence Viewer

Length: 1974 bp
atgaaggagatcatcgatatgggactgaagtgggggatatcgtatgcggtggaggttaggcctcttagggatggagagatggccgcaaatcctgcctcggggtgggtggcgctgcacgagaatcaattccaccaaggcttatcgctaccgctgccccggtgcctacaatatctgctgcggatgctgaacctgtcactggggcagctgaccccgaatgctgttcgccaaatatacagtatgatggctatgtgggacttgtgccaacaagggtggccttccgtaaacgagttccgcgcggtacaccgggtactgtactcaaggaagcagtcttgtgcgggtacggttaccttcgccgctagggatttcgagccattagttaccgacatgcctacctcgatgagcaaaaggtggaggaacaaggtgttcctagctggggggcggtggcagattaaaaataagaagtggcagctgaccggtaccttccaagctatcggggaccagtcctatactctatccgaagtagaaaggaagaggatagcccgggtatacgccttttggtcagagaaagagaggagctcttatagattcatccggcactctatactttataggctagggctagggtggctccccgtgaaagcgccgaagaggaaaccccggaaaggcaaggaggaggacagaatggatgatgcccaactgatggatatgctgatgggccagggagaagacgccctccacatcgacgtcgacctagggtcgaagggtacgagtcggtcaattgaagaaacccttctagagatcatcgacgagggatatggtgaacctgaccccgacgcgcccgtgacccacgtcgcgcagccctccatggccgatgttataacgatagatgacaccgggatgggaaaagtaccggccccggtgcctatctcctctcgttccactgggagcgatgaggctctactccctggtactggtgcgaagaggcagaagaaagatcacccgggaccggagtcgtcaccttctcttggcctgttatctcccgccattccggtaatccccaagaagcccatcaagcagctgctgagtgagtacggggttgccgatgaaaagtttgtgcggtccatgcttggggatatgaaggatatcgacctcgaccgggttagggccaaggataatactccccaggagaatcgccgtcttgcccgggaatcaatgatgcgggcactcttcaatgtgtacgccattgatgccagcgaggaggatactcatctgaaagaggaggttagcaatctctccaggcaggtgaagtatcttcatggcgagaaggccaagctggagaaggagcgggacgcattgagggcggagctggccgccgctaagcagcggatcaaggggcttgagggcgaagttgctgaggcccgggaagaggtaaaaaacgcccgggactctgagaaaaaggctgtagagtctgccgtctcatgcaaggagaaggcagaccacctggaggattgcctgcccgcggagaggcacgaggccgtggaagagtacaagtcctcggaagagctcatctctatgttggctgctgcccaagataaggctgtcatcatgaagttcaaggagtgggtggcggccggatatttagatgaagctaaattcaggcggggtcttctggagaaaaagaagaaggatcgggaggcggcgaccaagatgccggctccgctagttttcttattggatgctccgtcaacgtataatcgccaagtgcttggcggaggtggatccgcggctagtggttcaggtggttccttgtttgagtcatgggaagggattgattcgaaaataaaatctgctgctgcctggcctttgatggctgtccggggcttgtacttgatatcgaactccccaagctcgatggcccatttaattaacctgcccgatgtctctggtttctgcaaaacctgccttaatgggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

657

Amino Acids

73.21

Weight (kDa)

8.23

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 878
AarI CACCTGC 1 cut(s) 1291
AatII GACGTC 1 cut(s) 747
Acc36I ACCTGC 3 cut(s) 1291, 1938, 1967
Acc65I GGTACC 1 cut(s) 476
AccB1I GGYRCC 3 cut(s) 159, 476, 919
AccB7I CCANNNNNTGG 1 cut(s) 700
AccBSI CCGCTC 1 cut(s) 1345
AccI GTMKAC 2 cut(s) 546, 747
AccII CGCG 6 cut(s) 294, 296, 836, 854, 1520, 1784
AclWI GGATC 4 cut(s) 1394, 1695, 1773, 1786
AcoI YGGCCR 4 cut(s) 81, 867, 1368, 1629
AcsI RAATTY 1 cut(s) 1652
AcuI CTGAAG 1 cut(s) 47
AcyI GRCGYC 2 cut(s) 729, 744
AgeI ACCGGT 1 cut(s) 473
AgsI TTSAA 3 cut(s) 782, 1231, 1615
AhdI GACNNNNNGTC 1 cut(s) 754
AjiI CACGTC 1 cut(s) 850
AjnI CCWGG 6 cut(s) 717, 964, 1182, 1295, 1500, 1856
Alw21I GWGCWC 2 cut(s) 578, 1566
Alw26I GTCTC 2 cut(s) 1480, 1945
AlwI GGATC 4 cut(s) 1394, 1695, 1773, 1786
AlwNI CAGNNNCTG 1 cut(s) 1081
Ama87I CYCGRG 6 cut(s) 97, 540, 1000, 1203, 1419, 1440
ApoI RAATTY 1 cut(s) 1652
AsiGI ACCGGT 1 cut(s) 473
Asp700I GAANNNNTTC 2 cut(s) 125, 789
Asp718I GGTACC 1 cut(s) 476
AspA2I CCTAGG 1 cut(s) 751
AspLEI GCGC 5 cut(s) 112, 296, 643, 838, 856
AspS9I GGNCC 8 cut(s) 496, 715, 913, 1004, 1119, 1164, 1417, 1915
AsuHPI GGTGA 4 cut(s) 830, 989, 1008, 1315
AsuII TTCGAA 1 cut(s) 1835
AvaI CYCGRG 6 cut(s) 97, 540, 1000, 1203, 1419, 1440
AvaII GGWCC 3 cut(s) 496, 1004, 1119
AvrII CCTAGG 1 cut(s) 751
BaeGI GKGCMC 1 cut(s) 1225
BamHI GGATCC 1 cut(s) 1778
BanI GGYRCC 3 cut(s) 159, 476, 919
BanII GRGCYC 2 cut(s) 578, 1566
BauI CACGAG 2 cut(s) 116, 1529
BbsI GAAGAC 2 cut(s) 732, 1658
Bbv12I GWGCWC 2 cut(s) 578, 1566
BbvCI CCTCAGC 1 cut(s) 1413
BccI CCATC 9 cut(s) 65, 73, 235, 694, 706, 892, 1076, 1861, 1906
BceAI ACGGC 3 cut(s) 1179, 1457, 1520
BcgI CGANNNNNNTGC 2 cut(s) 1690, 1724
BciT130I CCWGG 6 cut(s) 719, 966, 1184, 1297, 1502, 1858
BciVI GTATCC 1 cut(s) 1255
BcoDI GTCTC 2 cut(s) 1480, 1945
BfaI CTAG 8 cut(s) 357, 428, 614, 620, 752, 794, 1721, 1788
BfmI CTRYAG 1 cut(s) 1461
BfoI RGCGCY 2 cut(s) 113, 644
BfuAI ACCTGC 3 cut(s) 1291, 1938, 1967
BfuI GTATCC 1 cut(s) 1255
BlnI CCTAGG 1 cut(s) 751
BlpI GCTNAGC 1 cut(s) 1377
Bme18I GGWCC 3 cut(s) 496, 1004, 1119
BmeRI GACNNNNNGTC 1 cut(s) 754
BmeT110I CYCGRG 6 cut(s) 97, 540, 1000, 1203, 1419, 1440
BmgBI CACGTC 1 cut(s) 850
BmgT120I GGNCC 8 cut(s) 496, 715, 913, 1004, 1119, 1164, 1417, 1915
BmrI ACTGGG 2 cut(s) 206, 951
BmsI GCATC 6 cut(s) 171, 679, 1206, 1237, 1698, 1726
BmuI ACTGGG 2 cut(s) 206, 951
BoxI GACNNNNGTC 2 cut(s) 848, 1009
BpiI GAAGAC 2 cut(s) 732, 1658
BplI GAGNNNNNCTC 4 cut(s) 560, 592, 1553, 1585
BpmI CTGGAG 4 cut(s) 1279, 1355, 1523, 1691
Bpu10I CCTNAGC 1 cut(s) 1413
Bpu1102I GCTNAGC 1 cut(s) 1377
Bpu14I TTCGAA 1 cut(s) 1835
BpuEI CTTGAG 2 cut(s) 301, 1418
Bsa29I ATCGAT 1 cut(s) 15
BsaBI GATNNNNATC 1 cut(s) 1266
BsaHI GRCGYC 2 cut(s) 729, 744
BsaWI WCCGGW 3 cut(s) 473, 1006, 1048
Bse118I RCCGGY 3 cut(s) 473, 910, 1711
Bse1I ACTGG 4 cut(s) 201, 499, 946, 976
Bse8I GATNNNNATC 1 cut(s) 1266
BseBI CCWGG 6 cut(s) 719, 966, 1184, 1297, 1502, 1858
BseCI ATCGAT 1 cut(s) 15
BseGI GGATG 6 cut(s) 76, 186, 588, 691, 903, 1741
BseJI GATNNNNATC 1 cut(s) 1266
BseMII CTCAG 3 cut(s) 1073, 1404, 1440
BseNI ACTGG 4 cut(s) 201, 499, 946, 976
BseRI GAGGAG 5 cut(s) 586, 686, 919, 1271, 1292
BseSI GKGCMC 1 cut(s) 1225
BseX3I CGGCCG 1 cut(s) 1629
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 98
Bsh1236I CGCG 6 cut(s) 294, 296, 836, 854, 1520, 1784
Bsh1285I CGRYCG 2 cut(s) 1156, 1632
BshNI GGYRCC 3 cut(s) 159, 476, 919
BshTI ACCGGT 1 cut(s) 473
BshVI ATCGAT 1 cut(s) 15
BsiEI CGRYCG 2 cut(s) 1156, 1632
BsiHKAI GWGCWC 2 cut(s) 578, 1566
BsiHKCI CYCGRG 6 cut(s) 97, 540, 1000, 1203, 1419, 1440
BslFI GGGAC 6 cut(s) 36, 266, 509, 1017, 1361, 1457
BsmAI GTCTC 2 cut(s) 1480, 1945
BsmBI CGTCTC 1 cut(s) 1480
BsmFI GGGAC 6 cut(s) 36, 266, 509, 1017, 1361, 1457
BsmI GAATGC 1 cut(s) 220
BsoBI CYCGRG 6 cut(s) 97, 540, 1000, 1203, 1419, 1440
Bsp119I TTCGAA 1 cut(s) 1835
Bsp1286I GDGCHC 3 cut(s) 578, 1225, 1566
Bsp143I GATC 6 cut(s) 9, 798, 994, 1386, 1687, 1778
Bsp1720I GCTNAGC 1 cut(s) 1377
Bsp19I CCATGG 1 cut(s) 864
BspCNI CTCAG 3 cut(s) 1074, 1405, 1441
BspDI ATCGAT 1 cut(s) 15
BspFNI CGCG 6 cut(s) 294, 296, 836, 854, 1520, 1784
BspHI TCATGA 1 cut(s) 1605
BspMI ACCTGC 3 cut(s) 1291, 1938, 1967
BspPI GGATC 4 cut(s) 1394, 1695, 1773, 1786
BspQI GCTCTTC 1 cut(s) 1554
BspT104I TTCGAA 1 cut(s) 1835
BspT107I GGYRCC 3 cut(s) 159, 476, 919
BsrBI CCGCTC 1 cut(s) 1345
BsrFI RCCGGY 3 cut(s) 473, 910, 1711
BsrI ACTGG 4 cut(s) 201, 499, 946, 976
BssAI RCCGGY 3 cut(s) 473, 910, 1711
BssMI GATC 6 cut(s) 9, 798, 994, 1386, 1687, 1778
BssNAI GTATAC 1 cut(s) 547
BssNI GRCGYC 2 cut(s) 729, 744
BssSI CACGAG 2 cut(s) 116, 1529
BssT1I CCWWGG 4 cut(s) 133, 751, 864, 1167
Bst1107I GTATAC 1 cut(s) 547
Bst2BI CACGAG 2 cut(s) 116, 1529
Bst2UI CCWGG 6 cut(s) 719, 966, 1184, 1297, 1502, 1858
Bst4CI ACNGT 3 cut(s) 236, 312, 343
Bst6I CTCTTC 7 cut(s) 524, 641, 974, 1232, 1419, 1536, 1554
BstACI GRCGYC 2 cut(s) 729, 744
BstAPI GCANNNNNTGC 2 cut(s) 92, 1959
BstBI TTCGAA 1 cut(s) 1835
BstC8I GCNNGC 6 cut(s) 1221, 1252, 1368, 1514, 1518, 1713
BstDEI CTNAG 5 cut(s) 65, 1082, 1377, 1413, 1449
BstDSI CCRYGG 4 cut(s) 864, 1518, 1536, 1782
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 6 cut(s) 76, 186, 588, 691, 903, 1741
BstFNI CGCG 6 cut(s) 294, 296, 836, 854, 1520, 1784
BstH2I RGCGCY 2 cut(s) 113, 644
BstHHI GCGC 5 cut(s) 112, 296, 643, 838, 856
BstKTI GATC 6 cut(s) 12, 801, 997, 1389, 1690, 1781
BstMAI GTCTC 2 cut(s) 1480, 1945
BstMBI GATC 6 cut(s) 9, 798, 994, 1386, 1687, 1778
BstMCI CGRYCG 2 cut(s) 1156, 1632
BstNI CCWGG 6 cut(s) 719, 966, 1184, 1297, 1502, 1858
BstNSI RCATGY 1 cut(s) 388
BstPAI GACNNNNGTC 2 cut(s) 848, 1009
BstPI GGTNACC 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 1461
BstSLI GKGCMC 1 cut(s) 1225
BstUI CGCG 6 cut(s) 294, 296, 836, 854, 1520, 1784
BstV2I GAAGAC 2 cut(s) 732, 1658
BstX2I RGATCY 1 cut(s) 1778
BstXI CCANNNNNNTGG 1 cut(s) 1766
BstYI RGATCY 1 cut(s) 1778
BstZ17I GTATAC 1 cut(s) 547
BstZI CGGCCG 1 cut(s) 1629
Bsu15I ATCGAT 1 cut(s) 15
BsuI GTATCC 1 cut(s) 1255
BsuTUI ATCGAT 1 cut(s) 15
BtgI CCRYGG 4 cut(s) 864, 1518, 1536, 1782
BtgZI GCGATG 1 cut(s) 963
BtrI CACGTC 1 cut(s) 850
BtsCI GGATG 6 cut(s) 76, 186, 588, 691, 903, 1741
BtsIMutI CAGTG 2 cut(s) 194, 939
BveI ACCTGC 3 cut(s) 1291, 1938, 1967
Cac8I GCNNGC 6 cut(s) 1221, 1252, 1368, 1514, 1518, 1713
CaiI CAGNNNCTG 1 cut(s) 1081
CciI TCATGA 1 cut(s) 1605
CfoI GCGC 5 cut(s) 112, 296, 643, 838, 856
Cfr10I RCCGGY 3 cut(s) 473, 910, 1711
Cfr13I GGNCC 8 cut(s) 496, 715, 913, 1004, 1119, 1164, 1417, 1915
Cfr42I CCGCGG 2 cut(s) 1521, 1785
Cfr9I CCCGGG 5 cut(s) 540, 1000, 1203, 1419, 1440
ClaI ATCGAT 1 cut(s) 15
CseI GACGC 3 cut(s) 737, 842, 1358
CspAI ACCGGT 1 cut(s) 473
CspCI CAANNNNNGTGG 2 cut(s) 251, 286
CviAII CATG 7 cut(s) 385, 865, 1123, 1316, 1479, 1606, 1818
DdeI CTNAG 5 cut(s) 65, 1082, 1377, 1413, 1449
DpnI GATC 6 cut(s) 11, 800, 996, 1388, 1689, 1780
DpnII GATC 6 cut(s) 9, 798, 994, 1386, 1687, 1778
DriI GACNNNNNGTC 1 cut(s) 754
EaeI YGGCCR 4 cut(s) 81, 867, 1368, 1629
EagI CGGCCG 1 cut(s) 1629
Eam1104I CTCTTC 7 cut(s) 524, 641, 974, 1232, 1419, 1536, 1554
Eam1105I GACNNNNNGTC 1 cut(s) 754
EarI CTCTTC 7 cut(s) 524, 641, 974, 1232, 1419, 1536, 1554
EciI GGCGGA 2 cut(s) 1376, 1785
Ecl136II GAGCTC 2 cut(s) 576, 1564
EclXI CGGCCG 1 cut(s) 1629
Eco130I CCWWGG 4 cut(s) 133, 751, 864, 1167
Eco147I AGGCCT 1 cut(s) 61
Eco24I GRGCYC 2 cut(s) 578, 1566
Eco32I GATATC 3 cut(s) 39, 1144, 1893
Eco47I GGWCC 3 cut(s) 496, 1004, 1119
Eco52I CGGCCG 1 cut(s) 1629
Eco53kI GAGCTC 2 cut(s) 576, 1564
Eco57I CTGAAG 1 cut(s) 47
Eco88I CYCGRG 6 cut(s) 97, 540, 1000, 1203, 1419, 1440
Eco91I GGTNACC 1 cut(s) 343
EcoICRI GAGCTC 2 cut(s) 576, 1564
EcoO65I GGTNACC 1 cut(s) 343
EcoRII CCWGG 6 cut(s) 717, 964, 1182, 1295, 1500, 1856
EcoRV GATATC 3 cut(s) 39, 1144, 1893
EcoT14I CCWWGG 4 cut(s) 133, 751, 864, 1167
EcoT38I GRGCYC 2 cut(s) 578, 1566
ErhI CCWWGG 4 cut(s) 133, 751, 864, 1167
Esp3I CGTCTC 1 cut(s) 1480
FaeI CATG 7 cut(s) 388, 868, 1126, 1319, 1482, 1609, 1821
FalI AAGNNNNNCTT 2 cut(s) 774, 806
FaqI GGGAC 6 cut(s) 36, 266, 509, 1017, 1361, 1457
FatI CATG 7 cut(s) 384, 864, 1122, 1315, 1478, 1605, 1817
FauI CCCGC 6 cut(s) 328, 1048, 1212, 1338, 1525, 1653
FblI GTMKAC 2 cut(s) 546, 747
FokI GGATG 6 cut(s) 83, 193, 575, 698, 910, 1748
FriOI GRGCYC 2 cut(s) 578, 1566
FspBI CTAG 8 cut(s) 357, 428, 614, 620, 752, 794, 1721, 1788
GlaI GCGC 5 cut(s) 111, 295, 642, 837, 855
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 4 cut(s) 1279, 1355, 1523, 1691
HaeII RGCGCY 2 cut(s) 113, 644
HgaI GACGC 3 cut(s) 737, 842, 1358
HhaI GCGC 5 cut(s) 112, 296, 643, 838, 856
Hin1I GRCGYC 2 cut(s) 729, 744
Hin1II CATG 7 cut(s) 388, 868, 1126, 1319, 1482, 1609, 1821
Hin6I GCGC 5 cut(s) 110, 294, 641, 836, 854
HinP1I GCGC 5 cut(s) 110, 294, 641, 836, 854
HincII GTYRAC 2 cut(s) 748, 1746
HindII GTYRAC 2 cut(s) 748, 1746
HphI GGTGA 4 cut(s) 830, 989, 1008, 1315
Hpy166II GTNNAC 7 cut(s) 283, 301, 547, 748, 821, 1237, 1746
Hpy188I TCNGA 5 cut(s) 517, 562, 1272, 1450, 1558
Hpy188III TCNNGA 4 cut(s) 794, 1606, 1670, 1691
Hpy8I GTNNAC 7 cut(s) 283, 301, 547, 748, 821, 1237, 1746
Hpy99I CGWCG 5 cut(s) 746, 749, 809, 836, 854
HpyCH4III ACNGT 3 cut(s) 236, 312, 343
HpyCH4IV ACGT 3 cut(s) 744, 849, 1748
HpyCH4V TGCA 3 cut(s) 115, 1482, 1953
HpyF3I CTNAG 5 cut(s) 65, 1082, 1377, 1413, 1449
HpySE526I ACGT 3 cut(s) 744, 849, 1748
Hsp92I GRCGYC 2 cut(s) 729, 744
Hsp92II CATG 7 cut(s) 388, 868, 1126, 1319, 1482, 1609, 1821
HspAI GCGC 5 cut(s) 110, 294, 641, 836, 854
KpnI GGTACC 1 cut(s) 480
KroI GCCGGC 1 cut(s) 1711
KroNI GCCGGC 1 cut(s) 1713
KspI CCGCGG 2 cut(s) 1521, 1785
Kzo9I GATC 6 cut(s) 9, 798, 994, 1386, 1687, 1778
LguI GCTCTTC 1 cut(s) 1554
LmnI GCTCC 7 cut(s) 573, 633, 945, 1342, 1363, 1720, 1744
LweI GCATC 6 cut(s) 171, 679, 1206, 1237, 1698, 1726
MaeI CTAG 8 cut(s) 357, 428, 614, 620, 752, 794, 1721, 1788
MaeII ACGT 3 cut(s) 744, 849, 1748
MaeIII GTNAC 5 cut(s) 192, 343, 376, 841, 1014
MalI GATC 6 cut(s) 11, 800, 996, 1388, 1689, 1780
MbiI CCGCTC 1 cut(s) 1345
MboI GATC 6 cut(s) 9, 798, 994, 1386, 1687, 1778
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 1 cut(s) 1778
MhlI GDGCHC 3 cut(s) 578, 1225, 1566
MluCI AATT 4 cut(s) 125, 777, 1652, 1923
MlyI GAGTC 5 cut(s) 778, 1019, 1439, 1475, 1823
MroNI GCCGGC 1 cut(s) 1711
MroXI GAANNNNTTC 2 cut(s) 125, 789
MseI TTAA 4 cut(s) 450, 1922, 1926, 1965
MslI CAYNNNNRTG 3 cut(s) 17, 896, 1571
MspA1I CMGCKG 7 cut(s) 151, 205, 469, 1078, 1384, 1520, 1784
MunI CAATTG 1 cut(s) 777
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 6 cut(s) 719, 966, 1184, 1297, 1502, 1858
MvnI CGCG 6 cut(s) 294, 296, 836, 854, 1520, 1784
NaeI GCCGGC 1 cut(s) 1713
NcoI CCATGG 1 cut(s) 864
NdeII GATC 6 cut(s) 9, 798, 994, 1386, 1687, 1778
NgoMIV GCCGGC 1 cut(s) 1711
NlaIII CATG 7 cut(s) 388, 868, 1126, 1319, 1482, 1609, 1821
NmuCI GTSAC 3 cut(s) 192, 841, 1014
NspI RCATGY 1 cut(s) 388
NspV TTCGAA 1 cut(s) 1835
PacI TTAATTAA 1 cut(s) 1926
PagI TCATGA 1 cut(s) 1605
PaqCI CACCTGC 1 cut(s) 1291
PceI AGGCCT 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 1554
PcsI WCGNNNNNNNCGW 2 cut(s) 764, 1098
PctI GAATGC 1 cut(s) 220
PdiI GCCGGC 1 cut(s) 1713
PdmI GAANNNNTTC 2 cut(s) 125, 789
PfeI GAWTC 5 cut(s) 121, 585, 1189, 1208, 1832
PflMI CCANNNNNTGG 1 cut(s) 700
PinAI ACCGGT 1 cut(s) 473
PleI GAGTC 5 cut(s) 777, 1018, 1439, 1474, 1822
PpsI GAGTC 5 cut(s) 777, 1018, 1439, 1474, 1822
PshAI GACNNNNGTC 2 cut(s) 848, 1009
PsiI TTATAA 1 cut(s) 878
Psp124BI GAGCTC 2 cut(s) 578, 1566
Psp6I CCWGG 6 cut(s) 717, 964, 1182, 1295, 1500, 1856
PspEI GGTNACC 1 cut(s) 343
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 6 cut(s) 717, 964, 1182, 1295, 1500, 1856
PspPI GGNCC 8 cut(s) 496, 715, 913, 1004, 1119, 1164, 1417, 1915
PstNI CAGNNNCTG 1 cut(s) 1081
PsuI RGATCY 1 cut(s) 1778
PvuII CAGCTG 3 cut(s) 205, 469, 1078
RseI CAYNNNNRTG 3 cut(s) 17, 896, 1571
SacI GAGCTC 2 cut(s) 578, 1566
SacII CCGCGG 2 cut(s) 1521, 1785
SalI GTCGAC 1 cut(s) 746
SapI GCTCTTC 1 cut(s) 1554
SaqAI TTAA 4 cut(s) 450, 1922, 1926, 1965
Sau3AI GATC 6 cut(s) 9, 798, 994, 1386, 1687, 1778
Sau96I GGNCC 8 cut(s) 496, 715, 913, 1004, 1119, 1164, 1417, 1915
SchI GAGTC 5 cut(s) 778, 1019, 1439, 1475, 1823
SduI GDGCHC 3 cut(s) 578, 1225, 1566
SfaNI GCATC 6 cut(s) 171, 679, 1206, 1237, 1698, 1726
SfcI CTRYAG 1 cut(s) 1461
Sfr303I CCGCGG 2 cut(s) 1521, 1785
SfuI TTCGAA 1 cut(s) 1835
SgrBI CCGCGG 2 cut(s) 1521, 1785
SinI GGWCC 3 cut(s) 496, 1004, 1119
SmaI CCCGGG 5 cut(s) 542, 1002, 1205, 1421, 1442
SmiMI CAYNNNNRTG 3 cut(s) 17, 896, 1571
SmlI CTYRAG 2 cut(s) 316, 1397
SmoI CTYRAG 2 cut(s) 316, 1397
Sse9I AATT 4 cut(s) 125, 777, 1652, 1923
SseBI AGGCCT 1 cut(s) 61
SspMI CTAG 8 cut(s) 357, 428, 614, 620, 752, 794, 1721, 1788
SstI GAGCTC 2 cut(s) 578, 1566
StuI AGGCCT 1 cut(s) 61
StyI CCWWGG 4 cut(s) 133, 751, 864, 1167
TaaI ACNGT 3 cut(s) 236, 312, 343
TaiI ACGT 3 cut(s) 747, 852, 1751
TaqII GACCGA 1 cut(s) 762
TasI AATT 4 cut(s) 125, 777, 1652, 1923
TatI WGTACW 3 cut(s) 312, 1545, 1884
TauI GCSGC 7 cut(s) 86, 356, 1373, 1376, 1631, 1700, 1787
TfiI GAWTC 5 cut(s) 121, 585, 1189, 1208, 1832
Tru1I TTAA 4 cut(s) 450, 1922, 1926, 1965
Tru9I TTAA 4 cut(s) 450, 1922, 1926, 1965
TscAI CASTG 2 cut(s) 201, 946
TseFI GTSAC 3 cut(s) 192, 841, 1014
Tsp45I GTSAC 3 cut(s) 192, 841, 1014
TspDTI ATGAA 7 cut(s) 17, 577, 1119, 1151, 1304, 1622, 1659
TspGWI ACGGA 2 cut(s) 268, 1731
TspMI CCCGGG 5 cut(s) 540, 1000, 1203, 1419, 1440
TspRI CASTG 2 cut(s) 201, 946
Van91I CCANNNNNTGG 1 cut(s) 700
VpaK11BI GGWCC 3 cut(s) 496, 1004, 1119
XapI RAATTY 1 cut(s) 1652
XbaI TCTAGA 1 cut(s) 793
XceI RCATGY 1 cut(s) 388
XmaI CCCGGG 5 cut(s) 540, 1000, 1203, 1419, 1440
XmaJI CCTAGG 1 cut(s) 751
XmiI GTMKAC 2 cut(s) 546, 747
XmnI GAANNNNTTC 2 cut(s) 125, 789
XspI CTAG 8 cut(s) 357, 428, 614, 620, 752, 794, 1721, 1788
ZraI GACGTC 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.