Rmu_ssc0000255.1_g000056

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000255.1
OG0000087
Physical Location & Seq
Forward (+)
310437 .. 312935
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000255.1_g000056.1.cds

Sequence Viewer

Length: 1842 bp
atgtgtagtgatcctatggttgaaggcctttcatcttcaacggctgtgattctttgcagattgaatttaagagggaaacaaactgtttcccttcactttcgtgaaaaccctcagagagcacagagagagagagactggatttgcagcagcgaggagaggaagaaggagccaaggaggaagtggtgttattgcctcttggtcgatctattgcttgctgaagaactaaacttatttgagcgatttttgctgttcttctttctctggttctgcgactgttctaggatggaatcagaaaccaaggccggggatgcaggatcgtcgtatcagtcttctgcaaggcaagcggaagcagatatcgaccggtacttggtgcgaagtagaaccgggaaggaattagcggagaataccggatcctcgacttgggtgttctcggagagtagtgaggagaccaacgaaggtgacagcggggatggatctgcggaggcaccagtagtcacggtggctattcccgagggcatcccgaaacgtaggtacacactggtggacgggaccatatgcgacgaacccgggagaagtatgactatgaaggagattatcgccatgagattgaagtggggaataccggacaaggtagagcttaggcctctcaaggctggagagttagctgcgaatcctcccccgggatgggtggcgctgcacgagaaccagctccaccaagggctatccctaccgctgccccggtgcctacagtatctgttgctgatgctgaacctgtcaccggggcagttgacttcgaatgcagttcgccaaatccttagtatgatggccatgtgggacttgtgccagcaagggtggccttccataaatgaatttcgcgcggcctactcattatctgaggtggaaagaaaaaggatagcccgggtatacgctgtttggagtgaggaggagagaagctcttatagatccatctggtattccgtacttgataggctagggctagggagactccccgtgaaagcgccgaaaaggaagccccggaaaggtaaggaggatgacagaatggacgataaccagctgatggacatgttgatgagccaggaagaagacgcccttcacattgaagtcgacctggggtcgaaatctacgggtcactccgttgaagaaactcttctggagctcactgatgtaggatatggggagcctgaccctgatgctcccgtaacccaagtcgagcagccttctgccgggaatgttgtcaccatagctgacactgcaagggaaaagatacagccctctgtatctctctattctcggtccgctggaagcgatgaagtcttgcttcctggtgagaagaagagatcacataggcaccggcaccggagcgaggataagcaggaggtgacctataccagacgggatgttaaagaatccggggtgaagaggcagaagaaaaatcacccgggaccagagtcgtcgctctcacttggcatgttgactcctgccataccggtaatccccaagaagcccattaaacaattgttgagcgagtacggggttgcggatgaaaagttcatgcgcggtatgctctcggacctgaaggatatagaccttgattgggtgcgggccaaagacaataccccacaagagaatcattgccttgcctgggagtcaatgatgcaggtatgggactgctttacccttgtcttacaatattttatggtgctaacggtgaagtatttgcatggggagaaagccaagctggagaaggagcgggactccttgaagaagaagattgagtccttgactccgatggttaccgagctggatgtggcgaaacgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

613

Amino Acids

69.67

Weight (kDa)

6.02

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1669
AccB1I GGYRCC 4 cut(s) 484, 741, 1368, 1374
AccB7I CCANNNNNTGG 1 cut(s) 1078
AccBSI CCGCTC 1 cut(s) 1771
AccI GTMKAC 2 cut(s) 924, 1125
AccII CGCG 3 cut(s) 876, 878, 1578
AclWI GGATC 6 cut(s) 5, 322, 405, 418, 481, 957
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 2 cut(s) 64, 869
AcuI CTGAAG 2 cut(s) 237, 1616
AcyI GRCGYC 1 cut(s) 1107
AfaI GTAC 4 cut(s) 365, 533, 981, 1550
AflIII ACRYGT 1 cut(s) 1083
AgeI ACCGGT 2 cut(s) 360, 1507
AgsI TTSAA 7 cut(s) 23, 39, 64, 610, 1121, 1160, 1783
AhdI GACNNNNNGTC 1 cut(s) 1132
AjnI CCWGG 4 cut(s) 1095, 1128, 1342, 1661
AleI CACNNNNGTG 2 cut(s) 99, 539
AloI GAACNNNNNNTCC 2 cut(s) 1553, 1585
AluBI AGCT 9 cut(s) 637, 665, 709, 954, 1075, 1177, 1265, 1759, 1822
AluI AGCT 9 cut(s) 637, 665, 709, 954, 1075, 1177, 1265, 1759, 1822
Alw21I GWGCWC 2 cut(s) 121, 1179
Alw26I GTCTC 3 cut(s) 126, 440, 997
AlwI GGATC 6 cut(s) 5, 322, 405, 418, 481, 957
AlwNI CAGNNNCTG 1 cut(s) 754
Ama87I CYCGRG 5 cut(s) 509, 566, 679, 918, 1459
AoxI GGCC 7 cut(s) 25, 300, 641, 825, 854, 879, 1623
ApeKI GCWGC 6 cut(s) 144, 147, 665, 694, 733, 1234
ApoI RAATTY 2 cut(s) 64, 869
AsiGI ACCGGT 2 cut(s) 360, 1507
Asp700I GAANNNNTTC 1 cut(s) 1167
AspLEI GCGC 4 cut(s) 694, 878, 1021, 1578
AspS9I GGNCC 5 cut(s) 549, 1314, 1463, 1591, 1623
AsuHPI GGTGA 8 cut(s) 470, 768, 1249, 1358, 1411, 1447, 1448, 1741
AsuII TTCGAA 1 cut(s) 794
AvaI CYCGRG 5 cut(s) 509, 566, 679, 918, 1459
AvaII GGWCC 4 cut(s) 549, 1314, 1463, 1591
BalI TGGCCA 1 cut(s) 827
BamHI GGATCC 1 cut(s) 410
BanI GGYRCC 4 cut(s) 484, 741, 1368, 1374
BanII GRGCYC 1 cut(s) 1179
BauI CACGAG 1 cut(s) 698
BbsI GAAGAC 2 cut(s) 321, 1110
Bbv12I GWGCWC 2 cut(s) 121, 1179
BbvI GCAGC 6 cut(s) 156, 159, 652, 681, 720, 1246
BccI CCATC 7 cut(s) 277, 464, 678, 817, 974, 1072, 1804
BceAI ACGGC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 300, 334
BciT130I CCWGG 4 cut(s) 1097, 1130, 1344, 1663
BcoDI GTCTC 3 cut(s) 126, 440, 997
BfaI CTAG 3 cut(s) 279, 992, 998
BfmI CTRYAG 1 cut(s) 746
BfoI RGCGCY 2 cut(s) 695, 1022
BfuAI ACCTGC 1 cut(s) 1669
BisI GCNGC 7 cut(s) 145, 148, 666, 695, 734, 879, 1235
BlsI GCNGC 7 cut(s) 146, 149, 667, 696, 735, 880, 1236
Bme18I GGWCC 4 cut(s) 549, 1314, 1463, 1591
BmeRI GACNNNNNGTC 1 cut(s) 1132
BmeT110I CYCGRG 5 cut(s) 509, 566, 679, 918, 1459
BmgT120I GGNCC 5 cut(s) 549, 1314, 1463, 1591, 1623
BmiI GGNNCC 9 cut(s) 168, 412, 486, 550, 743, 1200, 1370, 1376, 1464
BmsI GCATC 5 cut(s) 298, 525, 753, 1201, 1665
BoxI GACNNNNGTC 1 cut(s) 1468
BpiI GAAGAC 2 cut(s) 321, 1110
BplI GAGNNNNNCTC 4 cut(s) 938, 970, 1760, 1792
BpmI CTGGAG 3 cut(s) 675, 1193, 1781
Bpu10I CCTNAGC 1 cut(s) 638
Bpu14I TTCGAA 1 cut(s) 794
BpuEI CTTGAG 1 cut(s) 632
BsaHI GRCGYC 1 cut(s) 1107
BsaI GGTCTC 1 cut(s) 440
BsaWI WCCGGW 5 cut(s) 360, 407, 622, 1377, 1507
Bse118I RCCGGY 3 cut(s) 360, 1371, 1507
Bse1I ACTGG 3 cut(s) 140, 488, 543
Bse3DI GCAATG 1 cut(s) 1651
BseBI CCWGG 4 cut(s) 1097, 1130, 1344, 1663
BseGI GGATG 9 cut(s) 288, 313, 475, 516, 689, 1057, 1423, 1567, 1831
BseMI GCAATG 1 cut(s) 1651
BseMII CTCAG 2 cut(s) 125, 885
BseNI ACTGG 3 cut(s) 140, 488, 543
BseRI GAGGAG 4 cut(s) 167, 458, 956, 959
BseXI GCAGC 6 cut(s) 156, 159, 652, 681, 720, 1246
BsgI GTGCAG 1 cut(s) 680
Bsh1236I CGCG 3 cut(s) 876, 878, 1578
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 7 cut(s) 27, 302, 643, 827, 856, 881, 1625
BshNI GGYRCC 4 cut(s) 484, 741, 1368, 1374
BshTI ACCGGT 2 cut(s) 360, 1507
BsiEI CGRYCG 1 cut(s) 361
BsiHKAI GWGCWC 2 cut(s) 121, 1179
BsiHKCI CYCGRG 5 cut(s) 509, 566, 679, 918, 1459
BslFI GGGAC 5 cut(s) 562, 848, 1476, 1700, 1787
BsmAI GTCTC 3 cut(s) 126, 440, 997
BsmFI GGGAC 5 cut(s) 562, 848, 1476, 1700, 1787
BsmI GAATGC 1 cut(s) 802
BsnI GGCC 7 cut(s) 27, 302, 643, 827, 856, 881, 1625
Bso31I GGTCTC 1 cut(s) 440
BsoBI CYCGRG 5 cut(s) 509, 566, 679, 918, 1459
Bsp119I TTCGAA 1 cut(s) 794
Bsp1286I GDGCHC 2 cut(s) 121, 1179
Bsp143I GATC 7 cut(s) 10, 202, 314, 410, 473, 962, 1358
BspANI GGCC 7 cut(s) 27, 302, 643, 827, 856, 881, 1625
BspCNI CTCAG 2 cut(s) 124, 886
BspFNI CGCG 3 cut(s) 876, 878, 1578
BspLI GGNNCC 9 cut(s) 168, 412, 486, 550, 743, 1200, 1370, 1376, 1464
BspMI ACCTGC 1 cut(s) 1669
BspPI GGATC 6 cut(s) 5, 322, 405, 418, 481, 957
BspT104I TTCGAA 1 cut(s) 794
BspT107I GGYRCC 4 cut(s) 484, 741, 1368, 1374
BspTNI GGTCTC 1 cut(s) 440
BsrBI CCGCTC 1 cut(s) 1771
BsrDI GCAATG 1 cut(s) 1651
BsrFI RCCGGY 3 cut(s) 360, 1371, 1507
BsrI ACTGG 3 cut(s) 140, 488, 543
BssAI RCCGGY 3 cut(s) 360, 1371, 1507
BssMI GATC 7 cut(s) 10, 202, 314, 410, 473, 962, 1358
BssNAI GTATAC 1 cut(s) 925
BssNI GRCGYC 1 cut(s) 1107
BssSI CACGAG 1 cut(s) 698
BssT1I CCWWGG 3 cut(s) 170, 297, 715
Bst1107I GTATAC 1 cut(s) 925
Bst2BI CACGAG 1 cut(s) 698
Bst2UI CCWGG 4 cut(s) 1097, 1130, 1344, 1663
Bst4CI ACNGT 5 cut(s) 85, 275, 499, 750, 1729
Bst6I CTCTTC 3 cut(s) 1173, 1349, 1433
BstACI GRCGYC 1 cut(s) 1107
BstBI TTCGAA 1 cut(s) 794
BstC8I GCNNGC 4 cut(s) 213, 342, 845, 1623
BstDEI CTNAG 4 cut(s) 111, 638, 815, 894
BstEII GGTNACC 2 cut(s) 1399, 1813
BstF5I GGATG 9 cut(s) 288, 313, 475, 516, 689, 1057, 1423, 1567, 1831
BstFNI CGCG 3 cut(s) 876, 878, 1578
BstH2I RGCGCY 2 cut(s) 695, 1022
BstHHI GCGC 4 cut(s) 694, 878, 1021, 1578
BstKTI GATC 7 cut(s) 13, 205, 317, 413, 476, 965, 1361
BstMAI GTCTC 3 cut(s) 126, 440, 997
BstMBI GATC 7 cut(s) 10, 202, 314, 410, 473, 962, 1358
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 6 cut(s) 244, 308, 341, 853, 1271, 1582
BstNI CCWGG 4 cut(s) 1097, 1130, 1344, 1663
BstNSI RCATGY 2 cut(s) 1087, 1492
BstPAI GACNNNNGTC 1 cut(s) 1468
BstPI GGTNACC 2 cut(s) 1399, 1813
BstSFI CTRYAG 1 cut(s) 746
BstUI CGCG 3 cut(s) 876, 878, 1578
BstV1I GCAGC 6 cut(s) 156, 159, 652, 681, 720, 1246
BstV2I GAAGAC 2 cut(s) 321, 1110
BstX2I RGATCY 3 cut(s) 410, 473, 962
BstYI RGATCY 3 cut(s) 410, 473, 962
BstZ17I GTATAC 1 cut(s) 925
BsuRI GGCC 7 cut(s) 27, 302, 643, 827, 856, 881, 1625
BtgZI GCGATG 1 cut(s) 1341
BtsCI GGATG 9 cut(s) 288, 313, 475, 516, 689, 1057, 1423, 1567, 1831
BtsI GCAGTG 1 cut(s) 1269
BtsIMutI CAGTG 3 cut(s) 536, 1179, 1269
BveI ACCTGC 1 cut(s) 1669
Cac8I GCNNGC 4 cut(s) 213, 342, 845, 1623
CaiI CAGNNNCTG 1 cut(s) 754
CfoI GCGC 4 cut(s) 694, 878, 1021, 1578
Cfr10I RCCGGY 3 cut(s) 360, 1371, 1507
Cfr13I GGNCC 5 cut(s) 549, 1314, 1463, 1591, 1623
Cfr9I CCCGGG 4 cut(s) 566, 679, 918, 1459
CpoI CGGWCCG 1 cut(s) 1314
CseI GACGC 1 cut(s) 1115
Csp6I GTAC 4 cut(s) 364, 532, 980, 1549
CspAI ACCGGT 2 cut(s) 360, 1507
CspI CGGWCCG 1 cut(s) 1314
CviAII CATG 6 cut(s) 601, 829, 1084, 1489, 1573, 1742
CviQI GTAC 4 cut(s) 364, 532, 980, 1549
DdeI CTNAG 4 cut(s) 111, 638, 815, 894
DpnI GATC 7 cut(s) 12, 204, 316, 412, 475, 964, 1360
DpnII GATC 7 cut(s) 10, 202, 314, 410, 473, 962, 1358
DriI GACNNNNNGTC 1 cut(s) 1132
EaeI YGGCCR 1 cut(s) 825
Eam1104I CTCTTC 3 cut(s) 1173, 1349, 1433
Eam1105I GACNNNNNGTC 1 cut(s) 1132
EarI CTCTTC 3 cut(s) 1173, 1349, 1433
Ecl136II GAGCTC 1 cut(s) 1177
Eco130I CCWWGG 3 cut(s) 170, 297, 715
Eco147I AGGCCT 2 cut(s) 27, 643
Eco24I GRGCYC 1 cut(s) 1179
Eco31I GGTCTC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 4 cut(s) 549, 1314, 1463, 1591
Eco53kI GAGCTC 1 cut(s) 1177
Eco57I CTGAAG 2 cut(s) 237, 1616
Eco88I CYCGRG 5 cut(s) 509, 566, 679, 918, 1459
Eco91I GGTNACC 2 cut(s) 1399, 1813
EcoICRI GAGCTC 1 cut(s) 1177
EcoO65I GGTNACC 2 cut(s) 1399, 1813
EcoRII CCWGG 4 cut(s) 1095, 1128, 1342, 1661
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 3 cut(s) 170, 297, 715
EcoT38I GRGCYC 1 cut(s) 1179
ErhI CCWWGG 3 cut(s) 170, 297, 715
FaeI CATG 6 cut(s) 604, 832, 1087, 1492, 1576, 1745
FalI AAGNNNNNCTT 6 cut(s) 1095, 1127, 1152, 1184, 1323, 1355
FaqI GGGAC 5 cut(s) 562, 848, 1476, 1700, 1787
FatI CATG 6 cut(s) 600, 828, 1083, 1488, 1572, 1741
FauI CCCGC 3 cut(s) 458, 1614, 1764
FauNDI CATATG 1 cut(s) 554
FblI GTMKAC 2 cut(s) 924, 1125
Fnu4HI GCNGC 7 cut(s) 145, 148, 666, 695, 734, 879, 1235
FokI GGATG 9 cut(s) 295, 320, 482, 503, 696, 1064, 1430, 1574, 1838
FriOI GRGCYC 1 cut(s) 1179
Fsp4HI GCNGC 7 cut(s) 145, 148, 666, 695, 734, 879, 1235
FspBI CTAG 3 cut(s) 279, 992, 998
GlaI GCGC 4 cut(s) 693, 877, 1020, 1577
GluI GCNGC 7 cut(s) 145, 148, 666, 695, 734, 879, 1235
GsuI CTGGAG 3 cut(s) 675, 1193, 1781
HaeII RGCGCY 2 cut(s) 695, 1022
HaeIII GGCC 7 cut(s) 27, 302, 643, 827, 856, 881, 1625
HgaI GACGC 1 cut(s) 1115
HhaI GCGC 4 cut(s) 694, 878, 1021, 1578
Hin1I GRCGYC 1 cut(s) 1107
Hin1II CATG 6 cut(s) 604, 832, 1087, 1492, 1576, 1745
Hin6I GCGC 4 cut(s) 692, 876, 1019, 1576
HinP1I GCGC 4 cut(s) 692, 876, 1019, 1576
HincII GTYRAC 3 cut(s) 789, 1126, 1494
HindII GTYRAC 3 cut(s) 789, 1126, 1494
HphI GGTGA 8 cut(s) 470, 768, 1249, 1358, 1411, 1447, 1448, 1741
Hpy166II GTNNAC 6 cut(s) 534, 544, 789, 925, 1126, 1494
Hpy188I TCNGA 6 cut(s) 114, 292, 433, 895, 1591, 1809
Hpy188III TCNNGA 4 cut(s) 101, 509, 520, 1172
Hpy8I GTNNAC 6 cut(s) 534, 544, 789, 925, 1126, 1494
Hpy99I CGWCG 3 cut(s) 322, 563, 1477
HpyCH4III ACNGT 5 cut(s) 85, 275, 499, 750, 1729
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 9 cut(s) 57, 144, 311, 335, 697, 800, 1274, 1678, 1741
HpyF10VI GCNNNNNNNGC 6 cut(s) 244, 308, 341, 853, 1271, 1582
HpyF3I CTNAG 4 cut(s) 111, 638, 815, 894
HpySE526I ACGT 1 cut(s) 526
Hsp92I GRCGYC 1 cut(s) 1107
Hsp92II CATG 6 cut(s) 604, 832, 1087, 1492, 1576, 1745
HspAI GCGC 4 cut(s) 692, 876, 1019, 1576
Kzo9I GATC 7 cut(s) 10, 202, 314, 410, 473, 962, 1358
LmnI GCTCC 7 cut(s) 166, 714, 1174, 1198, 1219, 1380, 1768
Lsp1109I GCAGC 6 cut(s) 156, 159, 652, 681, 720, 1246
LweI GCATC 5 cut(s) 298, 525, 753, 1201, 1665
MaeI CTAG 3 cut(s) 279, 992, 998
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 8 cut(s) 458, 493, 774, 1148, 1219, 1255, 1399, 1813
MalI GATC 7 cut(s) 12, 204, 316, 412, 475, 964, 1360
MbiI CCGCTC 1 cut(s) 1771
MboI GATC 7 cut(s) 10, 202, 314, 410, 473, 962, 1358
MfeI CAATTG 1 cut(s) 1535
MflI RGATCY 3 cut(s) 410, 473, 962
MhlI GDGCHC 2 cut(s) 121, 1179
MlsI TGGCCA 1 cut(s) 827
MluCI AATT 4 cut(s) 64, 392, 869, 1535
MluNI TGGCCA 1 cut(s) 827
MlyI GAGTC 7 cut(s) 999, 1478, 1489, 1676, 1769, 1798, 1805
Mox20I TGGCCA 1 cut(s) 827
MroXI GAANNNNTTC 1 cut(s) 1167
MscI TGGCCA 1 cut(s) 827
MseI TTAA 3 cut(s) 68, 1422, 1530
MslI CAYNNNNRTG 3 cut(s) 99, 539, 1088
Msp20I TGGCCA 1 cut(s) 827
MspA1I CMGCKG 4 cut(s) 465, 733, 1075, 1319
MunI CAATTG 1 cut(s) 1535
Mva1269I GAATGC 1 cut(s) 802
MvaI CCWGG 4 cut(s) 1097, 1130, 1344, 1663
MvnI CGCG 3 cut(s) 876, 878, 1578
MwoI GCNNNNNNNGC 6 cut(s) 244, 308, 341, 853, 1271, 1582
NdeI CATATG 1 cut(s) 554
NdeII GATC 7 cut(s) 10, 202, 314, 410, 473, 962, 1358
NlaIII CATG 6 cut(s) 604, 832, 1087, 1492, 1576, 1745
NlaIV GGNNCC 9 cut(s) 168, 412, 486, 550, 743, 1200, 1370, 1376, 1464
NmuCI GTSAC 6 cut(s) 458, 493, 774, 1148, 1255, 1399
NspI RCATGY 2 cut(s) 1087, 1492
NspV TTCGAA 1 cut(s) 794
OliI CACNNNNGTG 2 cut(s) 99, 539
PceI AGGCCT 2 cut(s) 27, 643
PciI ACATGT 1 cut(s) 1083
PctI GAATGC 1 cut(s) 802
PdmI GAANNNNTTC 1 cut(s) 1167
PfeI GAWTC 5 cut(s) 49, 287, 670, 1427, 1648
PflMI CCANNNNNTGG 1 cut(s) 1078
PinAI ACCGGT 2 cut(s) 360, 1507
PkrI GCNGC 7 cut(s) 146, 149, 667, 696, 735, 880, 1236
PleI GAGTC 7 cut(s) 999, 1477, 1489, 1675, 1769, 1798, 1804
PpsI GAGTC 7 cut(s) 999, 1477, 1489, 1675, 1769, 1798, 1804
PscI ACATGT 1 cut(s) 1083
PshAI GACNNNNGTC 1 cut(s) 1468
Psp124BI GAGCTC 1 cut(s) 1179
Psp6I CCWGG 4 cut(s) 1095, 1128, 1342, 1661
PspEI GGTNACC 2 cut(s) 1399, 1813
PspGI CCWGG 4 cut(s) 1095, 1128, 1342, 1661
PspN4I GGNNCC 9 cut(s) 168, 412, 486, 550, 743, 1200, 1370, 1376, 1464
PspPI GGNCC 5 cut(s) 549, 1314, 1463, 1591, 1623
PstNI CAGNNNCTG 1 cut(s) 754
PsuI RGATCY 3 cut(s) 410, 473, 962
PvuII CAGCTG 1 cut(s) 1075
RsaI GTAC 4 cut(s) 365, 533, 981, 1550
RsaNI GTAC 4 cut(s) 364, 532, 980, 1549
RseI CAYNNNNRTG 3 cut(s) 99, 539, 1088
Rsr2I CGGWCCG 1 cut(s) 1314
RsrII CGGWCCG 1 cut(s) 1314
SacI GAGCTC 1 cut(s) 1179
SalI GTCGAC 1 cut(s) 1124
SaqAI TTAA 3 cut(s) 68, 1422, 1530
SatI GCNGC 7 cut(s) 145, 148, 666, 695, 734, 879, 1235
Sau3AI GATC 7 cut(s) 10, 202, 314, 410, 473, 962, 1358
Sau96I GGNCC 5 cut(s) 549, 1314, 1463, 1591, 1623
SchI GAGTC 7 cut(s) 999, 1478, 1489, 1676, 1769, 1798, 1805
SduI GDGCHC 2 cut(s) 121, 1179
SfaNI GCATC 5 cut(s) 298, 525, 753, 1201, 1665
SfcI CTRYAG 1 cut(s) 746
SfuI TTCGAA 1 cut(s) 794
SinI GGWCC 4 cut(s) 549, 1314, 1463, 1591
SmaI CCCGGG 4 cut(s) 568, 681, 920, 1461
SmiMI CAYNNNNRTG 3 cut(s) 99, 539, 1088
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 4 cut(s) 64, 392, 869, 1535
SseBI AGGCCT 2 cut(s) 27, 643
SspI AATATT 1 cut(s) 1712
SspMI CTAG 3 cut(s) 279, 992, 998
SstI GAGCTC 1 cut(s) 1179
StuI AGGCCT 2 cut(s) 27, 643
StyI CCWWGG 3 cut(s) 170, 297, 715
TaaI ACNGT 5 cut(s) 85, 275, 499, 750, 1729
TaiI ACGT 1 cut(s) 529
TaqI TCGA 7 cut(s) 201, 357, 416, 794, 1125, 1136, 1230
TaqII GACCGA 1 cut(s) 1302
TasI AATT 4 cut(s) 64, 392, 869, 1535
TauI GCSGC 1 cut(s) 881
TfiI GAWTC 5 cut(s) 49, 287, 670, 1427, 1648
Tru1I TTAA 3 cut(s) 68, 1422, 1530
Tru9I TTAA 3 cut(s) 68, 1422, 1530
TscAI CASTG 3 cut(s) 543, 1186, 1276
TseFI GTSAC 6 cut(s) 458, 493, 774, 1148, 1255, 1399
TseI GCWGC 6 cut(s) 144, 147, 665, 694, 733, 1234
Tsp45I GTSAC 6 cut(s) 458, 493, 774, 1148, 1255, 1399
TspDTI ATGAA 6 cut(s) 21, 599, 882, 1344, 1561, 1578
TspGWI ACGGA 2 cut(s) 967, 1144
TspMI CCCGGG 4 cut(s) 566, 679, 918, 1459
TspRI CASTG 3 cut(s) 543, 1186, 1276
Van91I CCANNNNNTGG 1 cut(s) 1078
VpaK11BI GGWCC 4 cut(s) 549, 1314, 1463, 1591
XapI RAATTY 2 cut(s) 64, 869
XceI RCATGY 2 cut(s) 1087, 1492
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XmaI CCCGGG 4 cut(s) 566, 679, 918, 1459
XmiI GTMKAC 2 cut(s) 924, 1125
XmnI GAANNNNTTC 1 cut(s) 1167
XspI CTAG 3 cut(s) 279, 992, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.