Rmu_sc0005406.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005406.1
OG0000087
Physical Location & Seq
Reverse (-)
48635 .. 51857
3223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005406.1_g000005.1.cds

Sequence Viewer

Length: 2208 bp
atggggtggagagaggacttggctctgatacccgatggggtagagaatttgagcctccggtacccaatggggtggagaggggactcggctctgatacccgatggggtagagaattttgagcctccggtacccaatggggtggagaggggactcggctctgatacccgatggggtagagaatttgagcctccggtacccaatggggtggagaggggactcggctctgatacccgatggggtagagaatttgagcctccggtacccaatggggcggagaggggactcggctctgatacccgatgggatatagcgagatttgaggtccccggtacgatagttaggatggaatcagaagccagaggtggggatacgggatcgtcgtaccagtcttctgccaggcaagttgaagtggataccgatcggtacttaggccgagtagatcaattagcagagaacacgggatcctcgactggggtgttctcggagagtagtgaggagtccgacgagggtgagagggaaggtggatctgcggaggccccggtagtcacggtggcaattcccgagggcatactgaagcctaggtatacacttgcggacgagaccgtatgcgacgaacccgggagaagtatgacaatgaaggagatcatcgccatgcgactgaagtggggaataccggacgcggtggatcttaggcctcttaggaatggagagatggcctcgaatcctgccccggggtgggtggcgctgcacgagaatcagttccaccaagggttatctctaccgttgcctacagtatctgctgcggatgctgaacctgtcaccggggcagttgaccccgaatgctattcggtcctgtactcaaggaagctgtcctgtgcgggtacggttacatttgcctctagggattacgaaccattagttaccgacatgccttcctcaatgagcaaaaggtggaggaacaaagtattcctagctggggggcggtggaaaattaaaaataagaagtggcagctgaccgtgaaagcgccaaagaggaaaccccggaaaggcaaagaggaggacagaatggatgatgctcagttaatggatatgctgatgggtcagggagaagacgcccttcacatcgatgtcgacctagggtcgaagggtacgggtcggtccgttgaagagaccctactggagatcaccgacgagggatatggggaacctgatcctgacactcccgtaacccaagtcgtgcagccctccgttgccgacgtcatcacaatagatgataacaggacgggaaaggtaccggtccccgtgtctatttcctctcgttctactgggagcgatgaggcattgcttcccagtgagaagaaaagatcccataggcaccggcatcgaagtgataagcaggaggtgacgtataccggccgggatgttcagggatttggtgcgaagaggcagaagaaagatcacccgggacctgggtcgtcgccttcgcttggcttgctgtctcctgcccttccggtaatccccaagaagcctattaagcagctgttaagtgaatacggggttgccgacgaaaagttcgtgcggtccatgttaagtgacctgaaggacattgacctcgaccgggtgcgggccaaggacaatacgcccaaagaaaatcgccgtctcacccgggaatccatgatgcaggcactcttcaatgtgtacgcgattgacgccagcgaggaagatactcatctgaaggaggagtttagcaatctctccgggaaggtgaagtatctgcatggcgagaaggccaagctggagaaggagcgggactcgttgaatgctgagatggccgcggctaagcagcgaatcgtggagcttgagggtgaagtctctgaggcgcgggaagaggtgaaaagcgctcgggactctgagaaaaaagctgcggagtctgccgtgtcatggaaggagaaggcagactacctggaggatcgccttcccgtggagaagcacgaggccgtggaggagtacaagtcctccgaagagctcattggtatgctaactgctgctcaagacaaggctgtcatcataaagttcaaagagtgggtggcggccgggtacctggatgaagcaaaattcaggcagggtcttctggagaaaaagaagaaagatcgggaggcggcgttcaggtctggtgccggtgggtcccagagtaccggtggcgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

735

Amino Acids

81.18

Weight (kDa)

5.22

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2060
AatII GACGTC 1 cut(s) 1260
Acc65I GGTACC 6 cut(s) 60, 127, 193, 259, 1291, 2097
AccB1I GGYRCC 8 cut(s) 60, 127, 193, 259, 1291, 1374, 2097, 2174
AccBSI CCGCTC 1 cut(s) 1807
AccI GTMKAC 3 cut(s) 584, 1131, 1409
AccII CGCG 4 cut(s) 680, 1703, 1835, 1882
AclWI GGATC 8 cut(s) 382, 456, 469, 532, 693, 1205, 1359, 1977
AcoI YGGCCR 3 cut(s) 1414, 1830, 2091
AcsI RAATTY 5 cut(s) 46, 112, 179, 245, 2114
AcuI CTGAAG 4 cut(s) 593, 680, 1619, 1754
AcyI GRCGYC 3 cut(s) 1113, 1257, 1710
AfeI AGCGCT 1 cut(s) 1900
AgeI ACCGGT 2 cut(s) 1294, 2195
AgsI TTSAA 5 cut(s) 407, 1166, 1693, 1819, 2077
AhdI GACNNNNNGTC 1 cut(s) 1138
AjnI CCWGG 4 cut(s) 395, 1468, 1962, 2100
AjuI GAANNNNNNNTTGG 2 cut(s) 2013, 2045
AloI GAACNNNNNNTCC 4 cut(s) 446, 478, 2147, 2179
AluBI AGCT 8 cut(s) 868, 974, 1012, 1540, 1795, 1858, 1922, 2026
AluI AGCT 8 cut(s) 868, 974, 1012, 1540, 1795, 1858, 1922, 2026
Alw21I GWGCWC 1 cut(s) 2028
Alw26I GTCTC 5 cut(s) 593, 1163, 1503, 1664, 1876
AlwI GGATC 8 cut(s) 382, 456, 469, 532, 693, 1205, 1359, 1977
AlwNI CAGNNNCTG 1 cut(s) 797
Ama87I CYCGRG 6 cut(s) 560, 617, 730, 1462, 1665, 1902
Aor51HI AGCGCT 1 cut(s) 1900
ApeKI GCWGC 8 cut(s) 745, 800, 1009, 1240, 1537, 1843, 1922, 2045
ApoI RAATTY 5 cut(s) 46, 112, 179, 245, 2114
ArsI GACNNNNNNTTYG 2 cut(s) 1556, 1588
AsiGI ACCGGT 2 cut(s) 1294, 2195
Asp700I GAANNNNTTC 1 cut(s) 758
Asp718I GGTACC 6 cut(s) 60, 127, 193, 259, 1291, 2097
AspA2I CCTAGG 2 cut(s) 578, 1135
AspLEI GCGC 4 cut(s) 745, 1027, 1882, 1901
AspS9I GGNCC 9 cut(s) 322, 535, 850, 1158, 1297, 1466, 1581, 1626, 2184
AsuHPI GGTGA 9 cut(s) 521, 811, 1177, 1414, 1451, 1654, 1777, 1877, 1903
AvaI CYCGRG 6 cut(s) 560, 617, 730, 1462, 1665, 1902
AvaII GGWCC 7 cut(s) 322, 850, 1158, 1297, 1466, 1581, 2184
AvrII CCTAGG 2 cut(s) 578, 1135
BaeI ACNNNNGTAYC 2 cut(s) 321, 354
BamHI GGATCC 1 cut(s) 461
BanI GGYRCC 8 cut(s) 60, 127, 193, 259, 1291, 1374, 2097, 2174
BanII GRGCYC 1 cut(s) 2028
BarI GAAGNNNNNNTAC 4 cut(s) 1158, 1190, 1943, 1975
BauI CACGAG 2 cut(s) 749, 1991
BbsI GAAGAC 3 cut(s) 381, 1116, 2120
Bbv12I GWGCWC 1 cut(s) 2028
BbvI GCAGC 8 cut(s) 732, 787, 1021, 1252, 1549, 1855, 1909, 2032
BccI CCATC 9 cut(s) 29, 95, 162, 228, 294, 337, 706, 1090, 1822
BceAI ACGGC 3 cut(s) 1641, 1919, 1982
BcgI CGANNNNNNTGC 2 cut(s) 1364, 1398
BciT130I CCWGG 4 cut(s) 397, 1470, 1964, 2102
BciVI GTATCC 2 cut(s) 361, 406
BcoDI GTCTC 5 cut(s) 593, 1163, 1503, 1664, 1876
BfaI CTAG 4 cut(s) 579, 900, 971, 1136
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 3 cut(s) 746, 1028, 1902
BfuI GTATCC 2 cut(s) 361, 406
BlnI CCTAGG 2 cut(s) 578, 1135
BlpI GCTNAGC 1 cut(s) 1839
Bme18I GGWCC 7 cut(s) 322, 850, 1158, 1297, 1466, 1581, 2184
BmeRI GACNNNNNGTC 1 cut(s) 1138
BmeT110I CYCGRG 6 cut(s) 560, 617, 730, 1462, 1665, 1902
BmgT120I GGNCC 9 cut(s) 322, 535, 850, 1158, 1297, 1466, 1581, 1626, 2184
BmrI ACTGGG 3 cut(s) 480, 1335, 1344
BmsI GCATC 4 cut(s) 796, 1063, 1390, 1668
BmuI ACTGGG 3 cut(s) 480, 1335, 1344
BoxI GACNNNNGTC 1 cut(s) 1471
BpiI GAAGAC 3 cut(s) 381, 1116, 2120
BplI GAGNNNNNCTC 4 cut(s) 701, 733, 1796, 1828
BpmI CTGGAG 4 cut(s) 1199, 1817, 1985, 2153
Bpu1102I GCTNAGC 1 cut(s) 1839
BpuEI CTTGAG 3 cut(s) 844, 1880, 2034
Bsa29I ATCGAT 1 cut(s) 1125
BsaBI GATNNNNATC 2 cut(s) 417, 1728
BsaHI GRCGYC 3 cut(s) 1113, 1257, 1710
BsaI GGTCTC 2 cut(s) 593, 1163
BsaWI WCCGGW 8 cut(s) 57, 124, 190, 256, 673, 1294, 1510, 2195
BsaXI ACNNNNNCTCC 8 cut(s) 1391, 1421, 1997, 2000, 2027, 2030, 2147, 2177
Bse118I RCCGGY 5 cut(s) 1294, 1377, 1412, 2177, 2195
Bse1I ACTGG 5 cut(s) 385, 475, 1182, 1330, 1350
Bse3DI GCAATG 1 cut(s) 1340
Bse8I GATNNNNATC 2 cut(s) 417, 1728
BseBI CCWGG 4 cut(s) 397, 1470, 1964, 2102
BseCI ATCGAT 1 cut(s) 1125
BseGI GGATG 5 cut(s) 348, 811, 1075, 1426, 2110
BseJI GATNNNNATC 2 cut(s) 417, 1728
BseMI GCAATG 1 cut(s) 1340
BseMII CTCAG 4 cut(s) 1091, 1815, 1866, 1902
BseNI ACTGG 5 cut(s) 385, 475, 1182, 1330, 1350
BseRI GAGGAG 4 cut(s) 509, 1070, 1754, 2018
BseX3I CGGCCG 2 cut(s) 1414, 2091
BseXI GCAGC 8 cut(s) 732, 787, 1021, 1252, 1549, 1855, 1909, 2032
BseYI CCCAGC 1 cut(s) 974
BsgI GTGCAG 2 cut(s) 731, 1259
Bsh1236I CGCG 4 cut(s) 680, 1703, 1835, 1882
Bsh1285I CGRYCG 4 cut(s) 421, 1417, 1618, 2094
BshNI GGYRCC 8 cut(s) 60, 127, 193, 259, 1291, 1374, 2097, 2174
BshTI ACCGGT 2 cut(s) 1294, 2195
BshVI ATCGAT 1 cut(s) 1125
BsiEI CGRYCG 4 cut(s) 421, 1417, 1618, 2094
BsiHKAI GWGCWC 1 cut(s) 2028
BsiHKCI CYCGRG 6 cut(s) 560, 617, 730, 1462, 1665, 1902
BsmAI GTCTC 5 cut(s) 593, 1163, 1503, 1664, 1876
BsmBI CGTCTC 1 cut(s) 1664
BsmI GAATGC 2 cut(s) 845, 1825
Bso31I GGTCTC 2 cut(s) 593, 1163
BsoBI CYCGRG 6 cut(s) 560, 617, 730, 1462, 1665, 1902
Bsp1286I GDGCHC 1 cut(s) 2028
Bsp1720I GCTNAGC 1 cut(s) 1839
BspCNI CTCAG 4 cut(s) 1090, 1816, 1867, 1903
BspDI ATCGAT 1 cut(s) 1125
BspFNI CGCG 4 cut(s) 680, 1703, 1835, 1882
BspPI GGATC 8 cut(s) 382, 456, 469, 532, 693, 1205, 1359, 1977
BspQI GCTCTTC 1 cut(s) 2016
BspT107I GGYRCC 8 cut(s) 60, 127, 193, 259, 1291, 1374, 2097, 2174
BspTNI GGTCTC 2 cut(s) 593, 1163
BsrBI CCGCTC 1 cut(s) 1807
BsrDI GCAATG 1 cut(s) 1340
BsrFI RCCGGY 5 cut(s) 1294, 1377, 1412, 2177, 2195
BsrI ACTGG 5 cut(s) 385, 475, 1182, 1330, 1350
BssAI RCCGGY 5 cut(s) 1294, 1377, 1412, 2177, 2195
BssNAI GTATAC 2 cut(s) 585, 1410
BssNI GRCGYC 3 cut(s) 1113, 1257, 1710
BssSI CACGAG 2 cut(s) 749, 1991
BssT1I CCWWGG 4 cut(s) 578, 766, 1135, 1629
Bst1107I GTATAC 2 cut(s) 585, 1410
Bst2BI CACGAG 2 cut(s) 749, 1991
Bst2UI CCWGG 4 cut(s) 397, 1470, 1964, 2102
Bst4CI ACNGT 6 cut(s) 550, 604, 783, 793, 886, 1018
Bst6I CTCTTC 5 cut(s) 1161, 1436, 1694, 1881, 2016
BstACI GRCGYC 3 cut(s) 1113, 1257, 1710
BstC8I GCNNGC 4 cut(s) 1493, 1626, 1683, 1714
BstDEI CTNAG 8 cut(s) 427, 689, 698, 1077, 1824, 1839, 1875, 1911
BstDSI CCRYGG 3 cut(s) 1833, 1980, 1998
BstF5I GGATG 5 cut(s) 348, 811, 1075, 1426, 2110
BstFNI CGCG 4 cut(s) 680, 1703, 1835, 1882
BstH2I RGCGCY 3 cut(s) 746, 1028, 1902
BstHHI GCGC 4 cut(s) 745, 1027, 1882, 1901
BstMAI GTCTC 5 cut(s) 593, 1163, 1503, 1664, 1876
BstMCI CGRYCG 4 cut(s) 421, 1417, 1618, 2094
BstMWI GCNNNNNNNGC 6 cut(s) 806, 1492, 1534, 1709, 1829, 1931
BstNI CCWGG 4 cut(s) 397, 1470, 1964, 2102
BstNSI RCATGY 1 cut(s) 931
BstPAI GACNNNNGTC 1 cut(s) 1471
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 4 cut(s) 680, 1703, 1835, 1882
BstV1I GCAGC 8 cut(s) 732, 787, 1021, 1252, 1549, 1855, 1909, 2032
BstV2I GAAGAC 3 cut(s) 381, 1116, 2120
BstX2I RGATCY 4 cut(s) 461, 524, 685, 1364
BstXI CCANNNNNNTGG 3 cut(s) 72, 139, 205
BstYI RGATCY 4 cut(s) 461, 524, 685, 1364
BstZ17I GTATAC 2 cut(s) 585, 1410
BstZI CGGCCG 2 cut(s) 1414, 2091
Bsu15I ATCGAT 1 cut(s) 1125
BsuI GTATCC 2 cut(s) 361, 406
BsuTUI ATCGAT 1 cut(s) 1125
BtgI CCRYGG 3 cut(s) 1833, 1980, 1998
BtgZI GCGATG 2 cut(s) 631, 1347
BtsCI GGATG 5 cut(s) 348, 811, 1075, 1426, 2110
BtsIMutI CAGTG 1 cut(s) 1357
Cac8I GCNNGC 4 cut(s) 1493, 1626, 1683, 1714
CaiI CAGNNNCTG 1 cut(s) 797
CfoI GCGC 4 cut(s) 745, 1027, 1882, 1901
Cfr10I RCCGGY 5 cut(s) 1294, 1377, 1412, 2177, 2195
Cfr13I GGNCC 9 cut(s) 322, 535, 850, 1158, 1297, 1466, 1581, 1626, 2184
Cfr42I CCGCGG 1 cut(s) 1836
Cfr9I CCCGGG 4 cut(s) 617, 730, 1462, 1665
ClaI ATCGAT 1 cut(s) 1125
CpoI CGGWCCG 1 cut(s) 1158
CseI GACGC 3 cut(s) 686, 1121, 1718
CspAI ACCGGT 2 cut(s) 1294, 2195
CspI CGGWCCG 1 cut(s) 1158
CviAII CATG 6 cut(s) 652, 928, 1585, 1675, 1778, 1941
DdeI CTNAG 8 cut(s) 427, 689, 698, 1077, 1824, 1839, 1875, 1911
DrdI GACNNNNNNGTC 1 cut(s) 2060
DriI GACNNNNNGTC 1 cut(s) 1138
DseDI GACNNNNNNGTC 1 cut(s) 2060
EaeI YGGCCR 3 cut(s) 1414, 1830, 2091
EagI CGGCCG 2 cut(s) 1414, 2091
Eam1104I CTCTTC 5 cut(s) 1161, 1436, 1694, 1881, 2016
Eam1105I GACNNNNNGTC 1 cut(s) 1138
EarI CTCTTC 5 cut(s) 1161, 1436, 1694, 1881, 2016
EciI GGCGGA 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 2026
EclXI CGGCCG 2 cut(s) 1414, 2091
Eco130I CCWWGG 4 cut(s) 578, 766, 1135, 1629
Eco147I AGGCCT 1 cut(s) 694
Eco24I GRGCYC 1 cut(s) 2028
Eco31I GGTCTC 2 cut(s) 593, 1163
Eco47I GGWCC 7 cut(s) 322, 850, 1158, 1297, 1466, 1581, 2184
Eco47III AGCGCT 1 cut(s) 1900
Eco52I CGGCCG 2 cut(s) 1414, 2091
Eco53kI GAGCTC 1 cut(s) 2026
Eco57I CTGAAG 4 cut(s) 593, 680, 1619, 1754
Eco88I CYCGRG 6 cut(s) 560, 617, 730, 1462, 1665, 1902
EcoICRI GAGCTC 1 cut(s) 2026
EcoO109I RGGNCCY 4 cut(s) 322, 535, 1466, 2184
EcoRII CCWGG 4 cut(s) 395, 1468, 1962, 2100
EcoT14I CCWWGG 4 cut(s) 578, 766, 1135, 1629
EcoT38I GRGCYC 1 cut(s) 2028
ErhI CCWWGG 4 cut(s) 578, 766, 1135, 1629
Esp3I CGTCTC 1 cut(s) 1664
FaeI CATG 6 cut(s) 655, 931, 1588, 1678, 1781, 1944
FalI AAGNNNNNCTT 2 cut(s) 1101, 1133
FatI CATG 6 cut(s) 651, 927, 1584, 1674, 1777, 1940
FauI CCCGC 4 cut(s) 871, 1617, 1800, 1875
FblI GTMKAC 3 cut(s) 584, 1131, 1409
FokI GGATG 5 cut(s) 355, 818, 1082, 1433, 2117
FriOI GRGCYC 1 cut(s) 2028
FspBI CTAG 4 cut(s) 579, 900, 971, 1136
GlaI GCGC 4 cut(s) 744, 1026, 1881, 1900
GsaI CCCAGC 1 cut(s) 978
GsuI CTGGAG 4 cut(s) 1199, 1817, 1985, 2153
HaeII RGCGCY 3 cut(s) 746, 1028, 1902
HgaI GACGC 3 cut(s) 686, 1121, 1718
HhaI GCGC 4 cut(s) 745, 1027, 1882, 1901
Hin1I GRCGYC 3 cut(s) 1113, 1257, 1710
Hin1II CATG 6 cut(s) 655, 931, 1588, 1678, 1781, 1944
Hin6I GCGC 4 cut(s) 743, 1025, 1880, 1899
HinP1I GCGC 4 cut(s) 743, 1025, 1880, 1899
HincII GTYRAC 2 cut(s) 832, 1132
HindII GTYRAC 2 cut(s) 832, 1132
HphI GGTGA 9 cut(s) 521, 811, 1177, 1414, 1451, 1654, 1777, 1877, 1903
Hpy166II GTNNAC 5 cut(s) 585, 832, 1132, 1410, 1699
Hpy188III TCNNGA 6 cut(s) 560, 1214, 1904, 2051, 2132, 2153
Hpy8I GTNNAC 5 cut(s) 585, 832, 1132, 1410, 1699
Hpy99I CGWCG 7 cut(s) 382, 506, 614, 1193, 1259, 1480, 1568
HpyCH4III ACNGT 6 cut(s) 550, 604, 783, 793, 886, 1018
HpyCH4IV ACGT 2 cut(s) 1257, 1406
HpyCH4V TGCA 4 cut(s) 748, 1240, 1681, 1777
HpyF10VI GCNNNNNNNGC 6 cut(s) 806, 1492, 1534, 1709, 1829, 1931
HpyF3I CTNAG 8 cut(s) 427, 689, 698, 1077, 1824, 1839, 1875, 1911
HpySE526I ACGT 2 cut(s) 1257, 1406
Hsp92I GRCGYC 3 cut(s) 1113, 1257, 1710
Hsp92II CATG 6 cut(s) 655, 931, 1588, 1678, 1781, 1944
HspAI GCGC 4 cut(s) 743, 1025, 1880, 1899
KflI GGGWCCC 1 cut(s) 2184
KpnI GGTACC 6 cut(s) 64, 131, 197, 263, 1295, 2101
KspI CCGCGG 1 cut(s) 1836
LguI GCTCTTC 1 cut(s) 2016
LmnI GCTCC 3 cut(s) 1329, 1804, 1855
Lsp1109I GCAGC 8 cut(s) 732, 787, 1021, 1252, 1549, 1855, 1909, 2032
LweI GCATC 4 cut(s) 796, 1063, 1390, 1668
MaeI CTAG 4 cut(s) 579, 900, 971, 1136
MaeII ACGT 2 cut(s) 1257, 1406
MaeIII GTNAC 7 cut(s) 544, 817, 886, 919, 1225, 1402, 1592
MbiI CCGCTC 1 cut(s) 1807
MflI RGATCY 4 cut(s) 461, 524, 685, 1364
MhlI GDGCHC 1 cut(s) 2028
MluCI AATT 8 cut(s) 46, 112, 179, 245, 443, 555, 990, 2114
MlyI GAGTC 8 cut(s) 77, 144, 210, 276, 506, 1805, 1901, 1937
MmeI TCCRAC 1 cut(s) 525
MroXI GAANNNNTTC 1 cut(s) 758
MseI TTAA 5 cut(s) 993, 1082, 1533, 1544, 1589
MslI CAYNNNNRTG 4 cut(s) 650, 1125, 1386, 2033
MspA1I CMGCKG 3 cut(s) 1012, 1540, 1835
Mva1269I GAATGC 2 cut(s) 845, 1825
MvaI CCWGG 4 cut(s) 397, 1470, 1964, 2102
MvnI CGCG 4 cut(s) 680, 1703, 1835, 1882
MwoI GCNNNNNNNGC 6 cut(s) 806, 1492, 1534, 1709, 1829, 1931
NlaIII CATG 6 cut(s) 655, 931, 1588, 1678, 1781, 1944
NmeAIII GCCGAG 5 cut(s) 65, 132, 198, 264, 458
NmuCI GTSAC 4 cut(s) 544, 817, 1402, 1592
NspI RCATGY 1 cut(s) 931
PceI AGGCCT 1 cut(s) 694
PciSI GCTCTTC 1 cut(s) 2016
PcsI WCGNNNNNNNCGW 4 cut(s) 377, 464, 1560, 1572
PctI GAATGC 2 cut(s) 845, 1825
PdmI GAANNNNTTC 1 cut(s) 758
PfeI GAWTC 5 cut(s) 347, 721, 754, 1670, 1848
PfoI TCCNGGA 1 cut(s) 1757
PinAI ACCGGT 2 cut(s) 1294, 2195
Ple19I CGATCG 1 cut(s) 421
PleI GAGTC 8 cut(s) 77, 144, 210, 276, 505, 1805, 1901, 1936
PpsI GAGTC 8 cut(s) 77, 144, 210, 276, 505, 1805, 1901, 1936
PpuMI RGGWCCY 3 cut(s) 322, 1466, 2184
PshAI GACNNNNGTC 1 cut(s) 1471
Psp124BI GAGCTC 1 cut(s) 2028
Psp5II RGGWCCY 3 cut(s) 322, 1466, 2184
Psp6I CCWGG 4 cut(s) 395, 1468, 1962, 2100
PspFI CCCAGC 1 cut(s) 974
PspGI CCWGG 4 cut(s) 395, 1468, 1962, 2100
PspPI GGNCC 9 cut(s) 322, 535, 850, 1158, 1297, 1466, 1581, 1626, 2184
PspPPI RGGWCCY 3 cut(s) 322, 1466, 2184
PstNI CAGNNNCTG 1 cut(s) 797
PsuI RGATCY 4 cut(s) 461, 524, 685, 1364
PvuI CGATCG 1 cut(s) 421
PvuII CAGCTG 2 cut(s) 1012, 1540
RseI CAYNNNNRTG 4 cut(s) 650, 1125, 1386, 2033
Rsr2I CGGWCCG 1 cut(s) 1158
RsrII CGGWCCG 1 cut(s) 1158
SacI GAGCTC 1 cut(s) 2028
SacII CCGCGG 1 cut(s) 1836
SalI GTCGAC 1 cut(s) 1130
SapI GCTCTTC 1 cut(s) 2016
SaqAI TTAA 5 cut(s) 993, 1082, 1533, 1544, 1589
Sau96I GGNCC 9 cut(s) 322, 535, 850, 1158, 1297, 1466, 1581, 1626, 2184
SchI GAGTC 8 cut(s) 77, 144, 210, 276, 506, 1805, 1901, 1937
SduI GDGCHC 1 cut(s) 2028
SfaNI GCATC 4 cut(s) 796, 1063, 1390, 1668
SfcI CTRYAG 1 cut(s) 789
Sfr303I CCGCGG 1 cut(s) 1836
SgrBI CCGCGG 1 cut(s) 1836
SinI GGWCC 7 cut(s) 322, 850, 1158, 1297, 1466, 1581, 2184
SmaI CCCGGG 4 cut(s) 619, 732, 1464, 1667
SmiMI CAYNNNNRTG 4 cut(s) 650, 1125, 1386, 2033
SmlI CTYRAG 3 cut(s) 859, 1859, 2049
SmoI CTYRAG 3 cut(s) 859, 1859, 2049
Sse9I AATT 8 cut(s) 46, 112, 179, 245, 443, 555, 990, 2114
SseBI AGGCCT 1 cut(s) 694
SspMI CTAG 4 cut(s) 579, 900, 971, 1136
SstI GAGCTC 1 cut(s) 2028
StuI AGGCCT 1 cut(s) 694
StyI CCWWGG 4 cut(s) 578, 766, 1135, 1629
TaaI ACNGT 6 cut(s) 550, 604, 783, 793, 886, 1018
TaiI ACGT 2 cut(s) 1260, 1409
TaqI TCGA 7 cut(s) 467, 719, 1125, 1131, 1142, 1384, 1614
TaqII GACCGA 2 cut(s) 838, 1146
TasI AATT 8 cut(s) 46, 112, 179, 245, 443, 555, 990, 2114
TatI WGTACW 2 cut(s) 855, 2007
TauI GCSGC 4 cut(s) 1835, 1838, 2093, 2162
TfiI GAWTC 5 cut(s) 347, 721, 754, 1670, 1848
Tru1I TTAA 5 cut(s) 993, 1082, 1533, 1544, 1589
Tru9I TTAA 5 cut(s) 993, 1082, 1533, 1544, 1589
TscAI CASTG 1 cut(s) 1357
TseFI GTSAC 4 cut(s) 544, 817, 1402, 1592
TseI GCWGC 8 cut(s) 745, 800, 1009, 1240, 1537, 1843, 1922, 2045
Tsp45I GTSAC 4 cut(s) 544, 817, 1402, 1592
TspDTI ATGAA 2 cut(s) 650, 2121
TspGWI ACGGA 2 cut(s) 1150, 1237
TspMI CCCGGG 4 cut(s) 617, 730, 1462, 1665
TspRI CASTG 1 cut(s) 1357
VpaK11BI GGWCC 7 cut(s) 322, 850, 1158, 1297, 1466, 1581, 2184
XapI RAATTY 5 cut(s) 46, 112, 179, 245, 2114
XceI RCATGY 1 cut(s) 931
XcmI CCANNNNNNNNNTGG 1 cut(s) 2195
XmaI CCCGGG 4 cut(s) 617, 730, 1462, 1665
XmaJI CCTAGG 2 cut(s) 578, 1135
XmiI GTMKAC 3 cut(s) 584, 1131, 1409
XmnI GAANNNNTTC 1 cut(s) 758
XspI CTAG 4 cut(s) 579, 900, 971, 1136
ZraI GACGTC 1 cut(s) 1258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.