Rmu_sc0040495.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040495.1
OG0000087
Physical Location & Seq
Forward (+)
1 .. 1170
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040495.1_g000001.1.cds

Sequence Viewer

Length: 1105 bp
agaggacgcccttcacatcgatgtcgacctagggtcgaaaggcacgagtcggtcacttgaagaaactcttctggagatcactgatgagggatatggtaagcctgaccccgacgctcccgtgacccacgtcgcgcagccttccatggtcgatgttatcacgataaatgacaccgggatgggaaaagtatcggtctccgtgcctatttcctcgcgttccactgggagcgatgaggtactacttcctggtgagaagaagagatcccataagcaccggcatcggcctgataaggaggtgacgtacactggccgggatgttcaaggtattggtgcgaagaggcagaagaaagatcacccgggatcagagtcgtcgccttcgcttggcctgttatctcctgtcattccggtaatccccaagaagcccatcaagcagctgctaagtgagtacggggttgctgatgagaagttcatgcggtccatgcttggggatctgaaggatattaacctcgaccgggttcgggccaaggataatactccccaggagaatcgccgtcttgcccgggagtcaatgatgcgggcactcttcaatgtgtacgccattgacgccaacgaggaagatactcatctgaaggaggaggtttgcaatctctccgggcaggtgaagtatcttcatggcgagaaggccaagctggagaaggaacgggactcattgagggctgaaatggccgcggctaagcagcggatggcggagcttgagggtgaagtcacggaggcgcgggaagaggtaaaaaacgccccggactccgagaaaaaggctgcagagtctgccgtttcatggaaggagaaggcagaccacctagaggatcgctttcccgcggagaagcacgaggccgtggaggagtacaaatcctcggaagagctcatctctatgctggctgctgcccaagataaggctgtcatcatgaagttcaaggagtgggtggcagctggatatttaggtgaagctaaattcaggcggggtctcctggagaaaaagaagaaagatctggaggcggcggccaagtctggtgccggtgggtcccagagtaccggtggcgatcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

40.52

Weight (kDa)

5.92

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 644
AccB1I GGYRCC 1 cut(s) 1065
AccI GTMKAC 1 cut(s) 25
AccII CGCG 5 cut(s) 132, 212, 726, 773, 873
AclWI GGATC 4 cut(s) 253, 365, 493, 868
AcoI YGGCCR 3 cut(s) 305, 721, 1054
AcsI RAATTY 1 cut(s) 1005
AcuI CTGAAG 2 cut(s) 510, 645
AcyI GRCGYC 2 cut(s) 7, 601
AfaI GTAC 6 cut(s) 235, 300, 444, 591, 900, 1085
AfiI CCNNNNNNNGG 7 cut(s) 378, 481, 509, 515, 832, 857, 947
AgeI ACCGGT 1 cut(s) 1086
AgsI TTSAA 4 cut(s) 60, 318, 584, 968
AhdI GACNNNNNGTC 1 cut(s) 32
AjiI CACGTC 1 cut(s) 128
AjnI CCWGG 3 cut(s) 242, 535, 1021
AluBI AGCT 6 cut(s) 431, 686, 749, 917, 984, 1002
AluI AGCT 6 cut(s) 431, 686, 749, 917, 984, 1002
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 2 cut(s) 197, 1023
AlwI GGATC 4 cut(s) 253, 365, 493, 868
AlwNI CAGNNNCTG 1 cut(s) 822
Ama87I CYCGRG 2 cut(s) 353, 556
AoxI GGCC 8 cut(s) 279, 305, 380, 517, 679, 721, 886, 1054
ApeKI GCWGC 8 cut(s) 134, 428, 431, 734, 813, 933, 936, 981
ApoI RAATTY 1 cut(s) 1005
AsiGI ACCGGT 1 cut(s) 1086
Asp700I GAANNNNTTC 1 cut(s) 67
AspA2I CCTAGG 1 cut(s) 29
AspLEI GCGC 2 cut(s) 134, 773
AspS9I GGNCC 3 cut(s) 472, 517, 1075
AsuC2I CCSGG 9 cut(s) 173, 309, 354, 355, 510, 557, 558, 650, 795
AsuHPI GGTGA 6 cut(s) 258, 305, 342, 668, 768, 1008
AvaI CYCGRG 2 cut(s) 353, 556
AvaII GGWCC 2 cut(s) 472, 1075
AvrII CCTAGG 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 578
BanI GGYRCC 1 cut(s) 1065
BanII GRGCYC 1 cut(s) 919
BauI CACGAG 2 cut(s) 44, 882
Bbv12I GWGCWC 1 cut(s) 919
BbvI GCAGC 8 cut(s) 146, 418, 440, 746, 800, 920, 923, 993
BccI CCATC 3 cut(s) 170, 429, 734
BceAI ACGGC 3 cut(s) 532, 810, 873
BcgI CGANNNNNNTGC 2 cut(s) 258, 292
BciT130I CCWGG 3 cut(s) 244, 537, 1023
BcnI CCSGG 9 cut(s) 173, 309, 354, 355, 510, 557, 558, 650, 795
BcoDI GTCTC 2 cut(s) 197, 1023
BfaI CTAG 2 cut(s) 30, 855
BfmI CTRYAG 1 cut(s) 814
BfuAI ACCTGC 1 cut(s) 644
BglII AGATCT 1 cut(s) 1040
BlnI CCTAGG 1 cut(s) 29
BlpI GCTNAGC 1 cut(s) 730
Bme18I GGWCC 2 cut(s) 472, 1075
BmeRI GACNNNNNGTC 1 cut(s) 32
BmeT110I CYCGRG 2 cut(s) 353, 556
BmgBI CACGTC 1 cut(s) 128
BmgT120I GGNCC 3 cut(s) 472, 517, 1075
BmiI GGNNCC 3 cut(s) 1067, 1076, 1077
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 2 cut(s) 284, 559
BmuI ACTGGG 1 cut(s) 229
BoxI GACNNNNGTC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 906, 938
BpmI CTGGAG 4 cut(s) 93, 708, 1044, 1065
Bpu1102I GCTNAGC 1 cut(s) 730
BpuEI CTTGAG 1 cut(s) 771
BpuMI CCSGG 9 cut(s) 173, 309, 354, 355, 510, 557, 558, 650, 795
Bsa29I ATCGAT 1 cut(s) 19
BsaBI GATNNNNATC 1 cut(s) 619
BsaHI GRCGYC 2 cut(s) 7, 601
BsaI GGTCTC 2 cut(s) 197, 1023
BsaWI WCCGGW 2 cut(s) 401, 1086
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 7 cut(s) 378, 481, 509, 515, 832, 857, 947
Bse118I RCCGGY 3 cut(s) 271, 1068, 1086
Bse1I ACTGG 2 cut(s) 224, 308
Bse8I GATNNNNATC 1 cut(s) 619
BseBI CCWGG 3 cut(s) 244, 537, 1023
BseCI ATCGAT 1 cut(s) 19
BseGI GGATG 3 cut(s) 181, 317, 745
BseJI GATNNNNATC 1 cut(s) 619
BseLI CCNNNNNNNGG 7 cut(s) 378, 481, 509, 515, 832, 857, 947
BseNI ACTGG 2 cut(s) 224, 308
BseRI GAGGAG 2 cut(s) 645, 909
BseSI GKGCMC 1 cut(s) 578
BseXI GCAGC 8 cut(s) 146, 418, 440, 746, 800, 920, 923, 993
Bsh1236I CGCG 5 cut(s) 132, 212, 726, 773, 873
Bsh1285I CGRYCG 2 cut(s) 509, 1097
BshFI GGCC 8 cut(s) 281, 307, 382, 519, 681, 723, 888, 1056
BshNI GGYRCC 1 cut(s) 1065
BshTI ACCGGT 1 cut(s) 1086
BshVI ATCGAT 1 cut(s) 19
BsiEI CGRYCG 2 cut(s) 509, 1097
BsiHKAI GWGCWC 1 cut(s) 919
BsiHKCI CYCGRG 2 cut(s) 353, 556
BslFI GGGAC 2 cut(s) 714, 1061
BslI CCNNNNNNNGG 7 cut(s) 378, 481, 509, 515, 832, 857, 947
BsmAI GTCTC 2 cut(s) 197, 1023
BsmFI GGGAC 2 cut(s) 714, 1061
BsnI GGCC 8 cut(s) 281, 307, 382, 519, 681, 723, 888, 1056
Bso31I GGTCTC 2 cut(s) 197, 1023
BsoBI CYCGRG 2 cut(s) 353, 556
Bsp1286I GDGCHC 2 cut(s) 578, 919
Bsp143I GATC 8 cut(s) 76, 258, 347, 357, 485, 860, 1040, 1094
Bsp1720I GCTNAGC 1 cut(s) 730
Bsp19I CCATGG 1 cut(s) 142
BspANI GGCC 8 cut(s) 281, 307, 382, 519, 681, 723, 888, 1056
BspDI ATCGAT 1 cut(s) 19
BspFNI CGCG 5 cut(s) 132, 212, 726, 773, 873
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 3 cut(s) 1067, 1076, 1077
BspMAI CTGCAG 1 cut(s) 818
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 4 cut(s) 253, 365, 493, 868
BspQI GCTCTTC 1 cut(s) 907
BspT107I GGYRCC 1 cut(s) 1065
BspTNI GGTCTC 2 cut(s) 197, 1023
BsrFI RCCGGY 3 cut(s) 271, 1068, 1086
BsrI ACTGG 2 cut(s) 224, 308
BssAI RCCGGY 3 cut(s) 271, 1068, 1086
BssMI GATC 8 cut(s) 76, 258, 347, 357, 485, 860, 1040, 1094
BssNI GRCGYC 2 cut(s) 7, 601
BssSI CACGAG 2 cut(s) 44, 882
BssT1I CCWWGG 3 cut(s) 29, 142, 520
Bst2BI CACGAG 2 cut(s) 44, 882
Bst2UI CCWGG 3 cut(s) 244, 537, 1023
Bst6I CTCTTC 6 cut(s) 73, 249, 327, 585, 772, 907
BstACI GRCGYC 2 cut(s) 7, 601
BstAPI GCANNNNNTGC 1 cut(s) 822
BstC8I GCNNGC 2 cut(s) 574, 931
BstDEI CTNAG 2 cut(s) 435, 730
BstDSI CCRYGG 4 cut(s) 142, 724, 871, 889
BstF5I GGATG 3 cut(s) 181, 317, 745
BstFNI CGCG 5 cut(s) 132, 212, 726, 773, 873
BstHHI GCGC 2 cut(s) 134, 773
BstKTI GATC 8 cut(s) 79, 261, 350, 360, 488, 863, 1043, 1097
BstMAI GTCTC 2 cut(s) 197, 1023
BstMBI GATC 8 cut(s) 76, 258, 347, 357, 485, 860, 1040, 1094
BstMCI CGRYCG 2 cut(s) 509, 1097
BstMWI GCNNNNNNNGC 5 cut(s) 425, 476, 600, 720, 822
BstNI CCWGG 3 cut(s) 244, 537, 1023
BstPAI GACNNNNGTC 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 814
BstSLI GKGCMC 1 cut(s) 578
BstUI CGCG 5 cut(s) 132, 212, 726, 773, 873
BstV1I GCAGC 8 cut(s) 146, 418, 440, 746, 800, 920, 923, 993
BstX2I RGATCY 3 cut(s) 258, 485, 1040
BstYI RGATCY 3 cut(s) 258, 485, 1040
Bsu15I ATCGAT 1 cut(s) 19
BsuRI GGCC 8 cut(s) 281, 307, 382, 519, 681, 723, 888, 1056
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 4 cut(s) 142, 724, 871, 889
BtgZI GCGATG 1 cut(s) 241
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 3 cut(s) 181, 317, 745
BtsIMutI CAGTG 3 cut(s) 79, 217, 301
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 2 cut(s) 574, 931
CaiI CAGNNNCTG 1 cut(s) 822
CciI TCATGA 1 cut(s) 958
CfoI GCGC 2 cut(s) 134, 773
Cfr10I RCCGGY 3 cut(s) 271, 1068, 1086
Cfr13I GGNCC 3 cut(s) 472, 517, 1075
Cfr42I CCGCGG 2 cut(s) 727, 874
Cfr9I CCCGGG 2 cut(s) 353, 556
ClaI ATCGAT 1 cut(s) 19
CseI GACGC 3 cut(s) 15, 120, 609
Csp6I GTAC 6 cut(s) 234, 299, 443, 590, 899, 1084
CspAI ACCGGT 1 cut(s) 1086
CviAII CATG 6 cut(s) 143, 467, 476, 669, 832, 959
CviQI GTAC 6 cut(s) 234, 299, 443, 590, 899, 1084
DdeI CTNAG 2 cut(s) 435, 730
DpnI GATC 8 cut(s) 78, 260, 349, 359, 487, 862, 1042, 1096
DpnII GATC 8 cut(s) 76, 258, 347, 357, 485, 860, 1040, 1094
DriI GACNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 3 cut(s) 305, 721, 1054
Eam1104I CTCTTC 6 cut(s) 73, 249, 327, 585, 772, 907
Eam1105I GACNNNNNGTC 1 cut(s) 32
EarI CTCTTC 6 cut(s) 73, 249, 327, 585, 772, 907
EciI GGCGGA 1 cut(s) 759
Ecl136II GAGCTC 1 cut(s) 917
Eco130I CCWWGG 3 cut(s) 29, 142, 520
Eco24I GRGCYC 1 cut(s) 919
Eco31I GGTCTC 2 cut(s) 197, 1023
Eco47I GGWCC 2 cut(s) 472, 1075
Eco53kI GAGCTC 1 cut(s) 917
Eco57I CTGAAG 2 cut(s) 510, 645
Eco88I CYCGRG 2 cut(s) 353, 556
EcoICRI GAGCTC 1 cut(s) 917
EcoO109I RGGNCCY 1 cut(s) 1075
EcoRII CCWGG 3 cut(s) 242, 535, 1021
EcoT14I CCWWGG 3 cut(s) 29, 142, 520
EcoT38I GRGCYC 1 cut(s) 919
ErhI CCWWGG 3 cut(s) 29, 142, 520
FaeI CATG 6 cut(s) 146, 470, 479, 672, 835, 962
FaiI YATR 9 cut(s) 94, 144, 265, 468, 477, 670, 833, 927, 960
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FaqI GGGAC 2 cut(s) 714, 1061
FatI CATG 6 cut(s) 142, 466, 475, 668, 831, 958
FauI CCCGC 4 cut(s) 565, 766, 878, 1006
FblI GTMKAC 1 cut(s) 25
FokI GGATG 3 cut(s) 188, 324, 752
FriOI GRGCYC 1 cut(s) 919
FspBI CTAG 2 cut(s) 30, 855
GlaI GCGC 2 cut(s) 133, 772
GsuI CTGGAG 4 cut(s) 93, 708, 1044, 1065
HaeIII GGCC 8 cut(s) 281, 307, 382, 519, 681, 723, 888, 1056
HgaI GACGC 3 cut(s) 15, 120, 609
HhaI GCGC 2 cut(s) 134, 773
Hin1I GRCGYC 2 cut(s) 7, 601
Hin1II CATG 6 cut(s) 146, 470, 479, 672, 835, 962
Hin6I GCGC 2 cut(s) 132, 771
HinP1I GCGC 2 cut(s) 132, 771
HincII GTYRAC 1 cut(s) 26
HindII GTYRAC 1 cut(s) 26
HinfI GANTC 7 cut(s) 47, 363, 542, 561, 702, 798, 819
HphI GGTGA 6 cut(s) 258, 305, 342, 668, 768, 1008
Hpy166II GTNNAC 3 cut(s) 26, 301, 590
Hpy188I TCNGA 5 cut(s) 362, 490, 625, 803, 911
Hpy188III TCNNGA 4 cut(s) 72, 158, 959, 1044
Hpy8I GTNNAC 3 cut(s) 26, 301, 590
Hpy99I CGWCG 3 cut(s) 114, 132, 371
HpyAV CCTTC 9 cut(s) 21, 148, 382, 485, 620, 671, 686, 830, 836
HpyCH4IV ACGT 2 cut(s) 127, 297
HpyCH4V TGCA 2 cut(s) 640, 816
HpyF10VI GCNNNNNNNGC 5 cut(s) 425, 476, 600, 720, 822
HpyF3I CTNAG 2 cut(s) 435, 730
HpySE526I ACGT 2 cut(s) 127, 297
Hsp92I GRCGYC 2 cut(s) 7, 601
Hsp92II CATG 6 cut(s) 146, 470, 479, 672, 835, 962
HspAI GCGC 2 cut(s) 132, 771
KflI GGGWCCC 1 cut(s) 1075
KspI CCGCGG 2 cut(s) 727, 874
Kzo9I GATC 8 cut(s) 76, 258, 347, 357, 485, 860, 1040, 1094
LguI GCTCTTC 1 cut(s) 907
LmnI GCTCC 3 cut(s) 119, 223, 746
Lsp1109I GCAGC 8 cut(s) 146, 418, 440, 746, 800, 920, 923, 993
LweI GCATC 2 cut(s) 284, 559
MaeI CTAG 2 cut(s) 30, 855
MaeII ACGT 2 cut(s) 127, 297
MaeIII GTNAC 4 cut(s) 52, 119, 293, 761
MalI GATC 8 cut(s) 78, 260, 349, 359, 487, 862, 1042, 1096
MboI GATC 8 cut(s) 76, 258, 347, 357, 485, 860, 1040, 1094
MflI RGATCY 3 cut(s) 258, 485, 1040
MhlI GDGCHC 2 cut(s) 578, 919
MluCI AATT 1 cut(s) 1005
MlyI GAGTC 6 cut(s) 56, 372, 570, 696, 792, 828
MroXI GAANNNNTTC 1 cut(s) 67
MseI TTAA 1 cut(s) 499
MslI CAYNNNNRTG 3 cut(s) 19, 174, 924
MspA1I CMGCKG 5 cut(s) 431, 726, 737, 873, 984
MvaI CCWGG 3 cut(s) 244, 537, 1023
MvnI CGCG 5 cut(s) 132, 212, 726, 773, 873
MwoI GCNNNNNNNGC 5 cut(s) 425, 476, 600, 720, 822
NciI CCSGG 9 cut(s) 173, 309, 354, 355, 510, 557, 558, 650, 795
NcoI CCATGG 1 cut(s) 142
NdeII GATC 8 cut(s) 76, 258, 347, 357, 485, 860, 1040, 1094
NlaIII CATG 6 cut(s) 146, 470, 479, 672, 835, 962
NlaIV GGNNCC 3 cut(s) 1067, 1076, 1077
NmuCI GTSAC 4 cut(s) 52, 119, 293, 761
PagI TCATGA 1 cut(s) 958
PaqCI CACCTGC 1 cut(s) 644
PciSI GCTCTTC 1 cut(s) 907
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 542
PfoI TCCNGGA 1 cut(s) 1021
PinAI ACCGGT 1 cut(s) 1086
Ple19I CGATCG 1 cut(s) 1097
PleI GAGTC 6 cut(s) 55, 371, 569, 696, 792, 827
PpsI GAGTC 6 cut(s) 55, 371, 569, 696, 792, 827
PpuMI RGGWCCY 1 cut(s) 1075
PshAI GACNNNNGTC 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 919
Psp5II RGGWCCY 1 cut(s) 1075
Psp6I CCWGG 3 cut(s) 242, 535, 1021
PspGI CCWGG 3 cut(s) 242, 535, 1021
PspN4I GGNNCC 3 cut(s) 1067, 1076, 1077
PspPI GGNCC 3 cut(s) 472, 517, 1075
PspPPI RGGWCCY 1 cut(s) 1075
PstI CTGCAG 1 cut(s) 818
PstNI CAGNNNCTG 1 cut(s) 822
PsuI RGATCY 3 cut(s) 258, 485, 1040
PvuI CGATCG 1 cut(s) 1097
PvuII CAGCTG 2 cut(s) 431, 984
RsaI GTAC 6 cut(s) 235, 300, 444, 591, 900, 1085
RsaNI GTAC 6 cut(s) 234, 299, 443, 590, 899, 1084
RseI CAYNNNNRTG 3 cut(s) 19, 174, 924
SacI GAGCTC 1 cut(s) 919
SacII CCGCGG 2 cut(s) 727, 874
SalI GTCGAC 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 907
SaqAI TTAA 1 cut(s) 499
Sau3AI GATC 8 cut(s) 76, 258, 347, 357, 485, 860, 1040, 1094
Sau96I GGNCC 3 cut(s) 472, 517, 1075
SchI GAGTC 6 cut(s) 56, 372, 570, 696, 792, 828
SduI GDGCHC 2 cut(s) 578, 919
SfaNI GCATC 2 cut(s) 284, 559
SfcI CTRYAG 1 cut(s) 814
Sfr303I CCGCGG 2 cut(s) 727, 874
SgrBI CCGCGG 2 cut(s) 727, 874
SinI GGWCC 2 cut(s) 472, 1075
SmaI CCCGGG 2 cut(s) 355, 558
SmiMI CAYNNNNRTG 3 cut(s) 19, 174, 924
SmlI CTYRAG 1 cut(s) 750
SmoI CTYRAG 1 cut(s) 750
Sse9I AATT 1 cut(s) 1005
SspMI CTAG 2 cut(s) 30, 855
SstI GAGCTC 1 cut(s) 919
StyI CCWWGG 3 cut(s) 29, 142, 520
TaiI ACGT 2 cut(s) 130, 300
TaqI TCGA 5 cut(s) 19, 25, 36, 148, 505
TaqII GACCGA 2 cut(s) 40, 179
TasI AATT 1 cut(s) 1005
TatI WGTACW 1 cut(s) 898
TauI GCSGC 4 cut(s) 726, 729, 1053, 1056
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 1 cut(s) 499
Tru9I TTAA 1 cut(s) 499
TscAI CASTG 3 cut(s) 86, 224, 308
TseFI GTSAC 4 cut(s) 52, 119, 293, 761
TseI GCWGC 8 cut(s) 134, 428, 431, 734, 813, 933, 936, 981
Tsp45I GTSAC 4 cut(s) 52, 119, 293, 761
TspDTI ATGAA 4 cut(s) 455, 657, 820, 975
TspGWI ACGGA 2 cut(s) 185, 780
TspMI CCCGGG 2 cut(s) 353, 556
TspRI CASTG 3 cut(s) 86, 224, 308
VpaK11BI GGWCC 2 cut(s) 472, 1075
XapI RAATTY 1 cut(s) 1005
XcmI CCANNNNNNNNNTGG 1 cut(s) 1086
XmaI CCCGGG 2 cut(s) 353, 556
XmaJI CCTAGG 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 67
XspI CTAG 2 cut(s) 30, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.