Rmu_ssc0000312.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000312.1
OG0000087
Physical Location & Seq
Reverse (-)
16916 .. 18070
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000312.1_g000005.1.cds

Sequence Viewer

Length: 999 bp
atgaccctggacaaggttgcctgcggcattacaagtgcggcccctaacacaaagggaaaacccattgacaagatggatgatctggcactactggatgagctgattaatgaaggggaggattcgctccacatcaacgttgatctggacaccgagaaggttgacctgaccgaggaagaggtcctcttggagatacccggtgagttcgtggaggctgaagaagacttacagcctagtgagaagaagaaaagaaaacatcaccatcaccgggatagcaagtctcctggtcttctggctccgaacgtccaggtcgttcctaagaaacccaccaagcagctctttgcccggtacggggtggcggatgagaagttcgtccggtccatgctggcagaccttaaggatatagaccttgaccgggtgcgagccaaggacaactccccgcaagagaaccataggattgcccgggaatccgtgatgcgggccctgtacaatgtgtacgcgatcgatgctagtgaagagggcacccagttgaaggaagaggtgagcaacctctccgggaaggtgaacttgaagtaccttcatggggaaaaagggaagctggagaaagagcgtgacgctctaaatcaaaatattgctgccttgaccttgaagttaagtgagctagaagaggagaggaagaagattccggcactggagggtcaggtggaagcgttgaggaaggagctggagcctctgcggggtttcgaggagaaggccaactcctggaaagccaaggctgagtatctggagggccagattgatgaagagtgccaccaagctgttgaggagtacaagggatcccaagaactggtggacttgctgttggctgctaggagcaaatgtatctcggagaaataccgcgagtggtctgcctctggttggatcgatgctgaaaagatgaagcgggaggtagcagagatgaagaggaaaaggcaggaggagcaagccaggaaggaagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

37.82

Weight (kDa)

5.28

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 518
AccB7I CCANNNNNTGG 2 cut(s) 759, 844
AccII CGCG 2 cut(s) 497, 897
AciI CCGC 8 cut(s) 24, 38, 356, 437, 475, 733, 895, 940
AclI AACGTT 1 cut(s) 135
AclWI GGATC 3 cut(s) 828, 841, 926
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 5 cut(s) 347, 485, 494, 572, 827
AflII CTTAAG 1 cut(s) 392
AgsI TTSAA 3 cut(s) 529, 568, 646
AjnI CCWGG 5 cut(s) 6, 280, 303, 758, 983
AloI GAACNNNNNNTCC 2 cut(s) 350, 382
AluBI AGCT 6 cut(s) 100, 334, 595, 658, 721, 815
AluI AGCT 6 cut(s) 100, 334, 595, 658, 721, 815
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 3 cut(s) 828, 841, 926
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 4 cut(s) 39, 477, 750, 787
ApaI GGGCCC 1 cut(s) 481
ApeKI GCWGC 3 cut(s) 331, 632, 863
AseI ATTAAT 1 cut(s) 105
AspS9I GGNCC 6 cut(s) 40, 178, 375, 477, 478, 787
AsuC2I CCSGG 7 cut(s) 195, 266, 343, 413, 460, 461, 553
AsuHPI GGTGA 5 cut(s) 209, 248, 254, 550, 571
AvaI CYCGRG 1 cut(s) 459
AvaII GGWCC 2 cut(s) 178, 375
BaeGI GKGCMC 2 cut(s) 481, 521
BamHI GGATCC 1 cut(s) 833
BanI GGYRCC 1 cut(s) 518
BanII GRGCYC 1 cut(s) 481
BarI GAAGNNNNNNTAC 2 cut(s) 207, 239
BbsI GAAGAC 2 cut(s) 225, 278
BbvI GCAGC 3 cut(s) 343, 619, 850
BccI CCATC 2 cut(s) 67, 267
BcgI CGANNNNNNTGC 2 cut(s) 887, 921
BciT130I CCWGG 5 cut(s) 8, 282, 305, 760, 985
BcnI CCSGG 7 cut(s) 195, 266, 343, 413, 460, 461, 553
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 4 cut(s) 231, 507, 659, 867
BfrI CTTAAG 1 cut(s) 392
BisI GCNGC 5 cut(s) 25, 39, 332, 633, 864
BlsI GCNGC 5 cut(s) 26, 40, 333, 634, 865
Bme18I GGWCC 2 cut(s) 178, 375
BmeT110I CYCGRG 1 cut(s) 459
BmgT120I GGNCC 6 cut(s) 40, 178, 375, 477, 478, 787
BmiI GGNNCC 6 cut(s) 42, 294, 479, 520, 726, 835
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 3 cut(s) 462, 493, 913
BmuI ACTGGG 1 cut(s) 517
BpiI GAAGAC 2 cut(s) 225, 278
BpmI CTGGAG 4 cut(s) 617, 710, 743, 803
BpuMI CCSGG 7 cut(s) 195, 266, 343, 413, 460, 461, 553
Bsa29I ATCGAT 2 cut(s) 501, 921
BsaJI CCNNGG 5 cut(s) 6, 168, 423, 459, 768
BsaWI WCCGGW 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 862, 892
Bse1I ACTGG 4 cut(s) 96, 523, 693, 849
BseBI CCWGG 5 cut(s) 8, 282, 305, 760, 985
BseCI ATCGAT 2 cut(s) 501, 921
BseDI CCNNGG 5 cut(s) 6, 168, 423, 459, 768
BseGI GGATG 3 cut(s) 82, 100, 364
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 4 cut(s) 96, 523, 693, 849
BseRI GAGGAG 4 cut(s) 680, 758, 836, 989
BseSI GKGCMC 2 cut(s) 481, 521
BseXI GCAGC 3 cut(s) 343, 619, 850
Bsh1236I CGCG 2 cut(s) 497, 897
Bsh1285I CGRYCG 1 cut(s) 501
BshFI GGCC 4 cut(s) 41, 479, 752, 789
BshNI GGYRCC 1 cut(s) 518
BshVI ATCGAT 2 cut(s) 501, 921
BsiEI CGRYCG 1 cut(s) 501
BsiHKCI CYCGRG 1 cut(s) 459
BsiSI CCGG 8 cut(s) 195, 265, 343, 373, 412, 460, 552, 683
BsmAI GTCTC 1 cut(s) 282
BsnI GGCC 4 cut(s) 41, 479, 752, 789
BsoBI CYCGRG 1 cut(s) 459
Bsp120I GGGCCC 1 cut(s) 477
Bsp1286I GDGCHC 2 cut(s) 481, 521
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 5 cut(s) 79, 139, 498, 833, 918
BspACI CCGC 8 cut(s) 24, 38, 356, 437, 475, 733, 895, 940
BspANI GGCC 4 cut(s) 41, 479, 752, 789
BspCNI CTCAG 1 cut(s) 766
BspDI ATCGAT 2 cut(s) 501, 921
BspFNI CGCG 2 cut(s) 497, 897
BspLI GGNNCC 6 cut(s) 42, 294, 479, 520, 726, 835
BspPI GGATC 3 cut(s) 828, 841, 926
BspT107I GGYRCC 1 cut(s) 518
BspTI CTTAAG 1 cut(s) 392
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 4 cut(s) 96, 523, 693, 849
BssECI CCNNGG 5 cut(s) 6, 168, 423, 459, 768
BssMI GATC 5 cut(s) 79, 139, 498, 833, 918
BssT1I CCWWGG 2 cut(s) 423, 768
Bst2UI CCWGG 5 cut(s) 8, 282, 305, 760, 985
Bst6I CTCTTC 6 cut(s) 168, 507, 528, 657, 795, 953
BstAFI CTTAAG 1 cut(s) 392
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 5 cut(s) 22, 384, 420, 477, 981
BstDEI CTNAG 2 cut(s) 315, 774
BstENI CCTNNNNNAGG 2 cut(s) 11, 167
BstF5I GGATG 3 cut(s) 82, 100, 364
BstFNI CGCG 2 cut(s) 497, 897
BstKTI GATC 5 cut(s) 82, 142, 501, 836, 921
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 5 cut(s) 79, 139, 498, 833, 918
BstMCI CGRYCG 1 cut(s) 501
BstMWI GCNNNNNNNGC 2 cut(s) 503, 976
BstNI CCWGG 5 cut(s) 8, 282, 305, 760, 985
BstSLI GKGCMC 2 cut(s) 481, 521
BstUI CGCG 2 cut(s) 497, 897
BstV1I GCAGC 3 cut(s) 343, 619, 850
BstV2I GAAGAC 2 cut(s) 225, 278
BstX2I RGATCY 1 cut(s) 833
BstYI RGATCY 1 cut(s) 833
Bsu15I ATCGAT 2 cut(s) 501, 921
BsuRI GGCC 4 cut(s) 41, 479, 752, 789
BsuTUI ATCGAT 2 cut(s) 501, 921
BtsCI GGATG 3 cut(s) 82, 100, 364
BtsIMutI CAGTG 1 cut(s) 686
Cac8I GCNNGC 5 cut(s) 22, 384, 420, 477, 981
Cfr13I GGNCC 6 cut(s) 40, 178, 375, 477, 478, 787
Cfr9I CCCGGG 1 cut(s) 459
ClaI ATCGAT 2 cut(s) 501, 921
CseI GACGC 1 cut(s) 620
Csp6I GTAC 5 cut(s) 346, 484, 493, 571, 826
CviAII CATG 2 cut(s) 379, 578
CviQI GTAC 5 cut(s) 346, 484, 493, 571, 826
DdeI CTNAG 2 cut(s) 315, 774
DpnI GATC 5 cut(s) 81, 141, 500, 835, 920
DpnII GATC 5 cut(s) 79, 139, 498, 833, 918
Eam1104I CTCTTC 6 cut(s) 168, 507, 528, 657, 795, 953
EarI CTCTTC 6 cut(s) 168, 507, 528, 657, 795, 953
EciI GGCGGA 1 cut(s) 371
Eco130I CCWWGG 2 cut(s) 423, 768
Eco24I GRGCYC 1 cut(s) 481
Eco47I GGWCC 2 cut(s) 178, 375
Eco57I CTGAAG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 459
EcoNI CCTNNNNNAGG 2 cut(s) 11, 167
EcoO109I RGGNCCY 2 cut(s) 178, 478
EcoRII CCWGG 5 cut(s) 6, 280, 303, 758, 983
EcoT14I CCWWGG 2 cut(s) 423, 768
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 2 cut(s) 423, 768
FaeI CATG 2 cut(s) 382, 581
FaiI YATR 5 cut(s) 380, 401, 450, 579, 997
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 548, 580
FatI CATG 2 cut(s) 378, 577
FauI CCCGC 4 cut(s) 444, 468, 726, 933
Fnu4HI GCNGC 5 cut(s) 25, 39, 332, 633, 864
FokI GGATG 3 cut(s) 89, 107, 371
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 5 cut(s) 25, 39, 332, 633, 864
FspBI CTAG 4 cut(s) 231, 507, 659, 867
GluI GCNGC 5 cut(s) 25, 39, 332, 633, 864
GsuI CTGGAG 4 cut(s) 617, 710, 743, 803
HaeIII GGCC 4 cut(s) 41, 479, 752, 789
HapII CCGG 8 cut(s) 195, 265, 343, 373, 412, 460, 552, 683
HgaI GACGC 1 cut(s) 620
Hin1II CATG 2 cut(s) 382, 581
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 119, 464, 679
HpaII CCGG 8 cut(s) 195, 265, 343, 373, 412, 460, 552, 683
HphI GGTGA 5 cut(s) 209, 248, 254, 550, 571
Hpy166II GTNNAC 4 cut(s) 160, 493, 562, 850
Hpy188I TCNGA 2 cut(s) 297, 886
Hpy188III TCNNGA 2 cut(s) 143, 782
Hpy8I GTNNAC 4 cut(s) 160, 493, 562, 850
HpyAV CCTTC 8 cut(s) 104, 148, 523, 550, 584, 709, 742, 982
HpyCH4IV ACGT 2 cut(s) 135, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 976
HpyF3I CTNAG 2 cut(s) 315, 774
HpySE526I ACGT 2 cut(s) 135, 300
Hsp92II CATG 2 cut(s) 382, 581
Kzo9I GATC 5 cut(s) 79, 139, 498, 833, 918
LmnI GCTCC 6 cut(s) 129, 298, 718, 724, 870, 976
Lsp1109I GCAGC 3 cut(s) 343, 619, 850
LweI GCATC 3 cut(s) 462, 493, 913
MaeI CTAG 4 cut(s) 231, 507, 659, 867
MaeII ACGT 2 cut(s) 135, 300
MaeIII GTNAC 1 cut(s) 608
MalI GATC 5 cut(s) 81, 141, 500, 835, 920
MboI GATC 5 cut(s) 79, 139, 498, 833, 918
MflI RGATCY 1 cut(s) 833
MhlI GDGCHC 2 cut(s) 481, 521
MmeI TCCRAC 1 cut(s) 896
MseI TTAA 3 cut(s) 105, 393, 650
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 8 cut(s) 195, 265, 343, 373, 412, 460, 552, 683
MvaI CCWGG 5 cut(s) 8, 282, 305, 760, 985
MvnI CGCG 2 cut(s) 497, 897
MwoI GCNNNNNNNGC 2 cut(s) 503, 976
NciI CCSGG 7 cut(s) 195, 266, 343, 413, 460, 461, 553
NdeII GATC 5 cut(s) 79, 139, 498, 833, 918
NlaIII CATG 2 cut(s) 382, 581
NlaIV GGNNCC 6 cut(s) 42, 294, 479, 520, 726, 835
NmuCI GTSAC 1 cut(s) 608
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PfeI GAWTC 3 cut(s) 119, 464, 679
PflMI CCANNNNNTGG 2 cut(s) 759, 844
PfoI TCCNGGA 2 cut(s) 551, 758
PkrI GCNGC 5 cut(s) 26, 40, 333, 634, 865
Ple19I CGATCG 1 cut(s) 501
PpuMI RGGWCCY 1 cut(s) 178
PshBI ATTAAT 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 135
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 5 cut(s) 6, 280, 303, 758, 983
PspGI CCWGG 5 cut(s) 6, 280, 303, 758, 983
PspN4I GGNNCC 6 cut(s) 42, 294, 479, 520, 726, 835
PspOMI GGGCCC 1 cut(s) 477
PspPI GGNCC 6 cut(s) 40, 178, 375, 477, 478, 787
PspPPI RGGWCCY 1 cut(s) 178
PsrI GAACNNNNNNTAC 2 cut(s) 554, 586
PsuI RGATCY 1 cut(s) 833
PvuI CGATCG 1 cut(s) 501
RsaI GTAC 5 cut(s) 347, 485, 494, 572, 827
RsaNI GTAC 5 cut(s) 346, 484, 493, 571, 826
SaqAI TTAA 3 cut(s) 105, 393, 650
SatI GCNGC 5 cut(s) 25, 39, 332, 633, 864
Sau3AI GATC 5 cut(s) 79, 139, 498, 833, 918
Sau96I GGNCC 6 cut(s) 40, 178, 375, 477, 478, 787
SduI GDGCHC 2 cut(s) 481, 521
SfaNI GCATC 3 cut(s) 462, 493, 913
SinI GGWCC 2 cut(s) 178, 375
SmaI CCCGGG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
SsiI CCGC 8 cut(s) 24, 38, 356, 437, 475, 733, 895, 940
SspI AATATT 1 cut(s) 628
SspMI CTAG 4 cut(s) 231, 507, 659, 867
StyI CCWWGG 2 cut(s) 423, 768
TaiI ACGT 2 cut(s) 138, 303
TaqI TCGA 3 cut(s) 501, 741, 921
TaqII GACCGA 1 cut(s) 182
TatI WGTACW 2 cut(s) 483, 825
TauI GCSGC 2 cut(s) 27, 41
TfiI GAWTC 3 cut(s) 119, 464, 679
Tru1I TTAA 3 cut(s) 105, 393, 650
Tru9I TTAA 3 cut(s) 105, 393, 650
TscAI CASTG 1 cut(s) 693
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 3 cut(s) 331, 632, 863
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 5 cut(s) 123, 566, 813, 950, 971
TspGWI ACGGA 1 cut(s) 457
TspMI CCCGGG 1 cut(s) 459
TspRI CASTG 1 cut(s) 693
Van91I CCANNNNNTGG 2 cut(s) 759, 844
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 2 cut(s) 178, 375
VspI ATTAAT 1 cut(s) 105
XagI CCTNNNNNAGG 2 cut(s) 11, 167
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XmaI CCCGGG 1 cut(s) 459
XspI CTAG 4 cut(s) 231, 507, 659, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.