Rmu_sc0004012.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004012.1
OG0000087
Physical Location & Seq
Forward (+)
31972 .. 36511
4540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004012.1_g000010.1.cds

Sequence Viewer

Length: 1173 bp
atgctaacccttgtgcttctggttccagatatagcgagatttgaggtccccggtaccgtagttaggatggaatcagaaggcaggggtggggatacgggatcgtcgtaccagtcttctgccaggcaagctgaagtggatatcaaccggtacttaggccgagtagatcaattagcagagaacacgggatcctcgactggggtgttctcggagagtagtgaggagtccgacgagggtgagagcgagggtggatctgcagaggccccggtagtcacagtggccattcccgagggcataccgaagcggaggtatacacttgcggatgggaccgtatgcgacgaacccgggagaagtatgacgatgaaggagatcatcgacatgagacttaagtgggggataccggacgcggtggatcttaggcctctcagggatggagagatggcagcgaatcctgccccggggtgggtggcgctgcacgagaatcaactccaccaagggttatctctaccgctgccccggtgcctacagtatctgctgcggatgctgaacctgtccctggggcagctgaccccgaatgccattctccaaatatacagtatgatggctatgtgggacttgtgccaacaagggtggccttccataaacgaattccgcgcgtcctatactctatccgaagtagaaaggaagaggatagcccgggtatatgctgtttggtcagagaaagagaggagctcttatagattcatccagcactctatactttataggctagggctagggtggctccctgtgaaagcgccgaagaggaaaccttggaaaggcaaggaggaggacataatggatgatgcccaattgatggatatgctgatgggccagggggaagacggccttcacatcgatgtcgacctagggtcgaaaggtacaagtcggtcaattgaagaaacccttctggagataaccgatgagggatatggtgaacctgaccctgacgctcccatgacccacgtcgtgcagccctccactgccgacgttatcacgatagatgacaccgggacgggaaaggagagccagtgccactctttcaatgtccgggtacctggattctgcaccagtgtaaccttttccagcgtagtacactgggtactcgcaatcagaatccttcctaatcaagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

390

Amino Acids

43.21

Weight (kDa)

4.82

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 53, 1090
AccB1I GGYRCC 3 cut(s) 53, 516, 1090
AccB7I CCANNNNNTGG 1 cut(s) 853
AccI GTMKAC 2 cut(s) 308, 900
AccII CGCG 3 cut(s) 404, 651, 653
AciI CCGC 6 cut(s) 301, 317, 404, 506, 535, 649
AclWI GGATC 5 cut(s) 106, 180, 193, 256, 417
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 1006
AfaI GTAC 7 cut(s) 55, 107, 149, 919, 1092, 1131, 1140
AfiI CCNNNNNNNGG 8 cut(s) 63, 195, 455, 459, 460, 553, 815, 853
AflII CTTAAG 1 cut(s) 383
AgeI ACCGGT 1 cut(s) 144
AgsI TTSAA 2 cut(s) 935, 1081
AhdI GACNNNNNGTC 1 cut(s) 907
AjiI CACGTC 1 cut(s) 1003
AjnI CCWGG 4 cut(s) 119, 552, 870, 1093
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 3 cut(s) 128, 562, 729
AluI AGCT 3 cut(s) 128, 562, 729
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 1 cut(s) 373
AlwI GGATC 5 cut(s) 106, 180, 193, 256, 417
AlwNI CAGNNNCTG 1 cut(s) 529
Ama87I CYCGRG 4 cut(s) 284, 341, 454, 693
AoxI GGCC 7 cut(s) 154, 258, 276, 416, 629, 868, 883
ApeKI GCWGC 6 cut(s) 440, 469, 508, 532, 559, 1009
ApoI RAATTY 1 cut(s) 644
AsiGI ACCGGT 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 942
Asp718I GGTACC 2 cut(s) 53, 1090
AspA2I CCTAGG 1 cut(s) 904
AspLEI GCGC 3 cut(s) 469, 653, 796
AspS9I GGNCC 4 cut(s) 46, 259, 324, 868
AsuHPI GGTGA 2 cut(s) 245, 983
AvaI CYCGRG 4 cut(s) 284, 341, 454, 693
AvaII GGWCC 2 cut(s) 46, 324
AvrII CCTAGG 1 cut(s) 904
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BalI TGGCCA 1 cut(s) 278
BamHI GGATCC 1 cut(s) 185
BanI GGYRCC 3 cut(s) 53, 516, 1090
BanII GRGCYC 1 cut(s) 731
BauI CACGAG 1 cut(s) 473
BbsI GAAGAC 2 cut(s) 105, 885
Bbv12I GWGCWC 1 cut(s) 731
BbvI GCAGC 6 cut(s) 452, 456, 495, 519, 571, 1021
BccI CCATC 7 cut(s) 61, 314, 422, 430, 592, 847, 859
BceAI ACGGC 1 cut(s) 898
BciT130I CCWGG 4 cut(s) 121, 554, 872, 1095
BciVI GTATCC 2 cut(s) 85, 387
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 3 cut(s) 767, 773, 905
BfmI CTRYAG 2 cut(s) 252, 521
BfoI RGCGCY 2 cut(s) 470, 797
BfrI CTTAAG 1 cut(s) 383
BfuI GTATCC 2 cut(s) 85, 387
BisI GCNGC 6 cut(s) 441, 470, 509, 533, 560, 1010
BlnI CCTAGG 1 cut(s) 904
BlsI GCNGC 6 cut(s) 442, 471, 510, 534, 561, 1011
Bme18I GGWCC 2 cut(s) 46, 324
BmeRI GACNNNNNGTC 1 cut(s) 907
BmeT110I CYCGRG 4 cut(s) 284, 341, 454, 693
BmgBI CACGTC 1 cut(s) 1003
BmgT120I GGNCC 4 cut(s) 46, 259, 324, 868
BmiI GGNNCC 9 cut(s) 24, 48, 55, 187, 261, 325, 518, 782, 1092
BmrI ACTGGG 2 cut(s) 204, 1144
BmsI GCATC 2 cut(s) 528, 832
BmuI ACTGGG 2 cut(s) 204, 1144
BoxI GACNNNNGTC 1 cut(s) 1001
BpiI GAAGAC 2 cut(s) 105, 885
BplI GAGNNNNNCTC 2 cut(s) 713, 745
BpmI CTGGAG 1 cut(s) 968
Bsa29I ATCGAT 1 cut(s) 894
BsaWI WCCGGW 2 cut(s) 144, 397
BsaXI ACNNNNNCTCC 2 cut(s) 1052, 1082
Bsc4I CCNNNNNNNGG 8 cut(s) 63, 195, 455, 459, 460, 553, 815, 853
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 5 cut(s) 109, 199, 1066, 1107, 1139
BseBI CCWGG 4 cut(s) 121, 554, 872, 1095
BseCI ATCGAT 1 cut(s) 894
BseGI GGATG 6 cut(s) 72, 325, 433, 543, 741, 844
BseLI CCNNNNNNNGG 8 cut(s) 63, 195, 455, 459, 460, 553, 815, 853
BseMII CTCAG 1 cut(s) 436
BseNI ACTGG 5 cut(s) 109, 199, 1066, 1107, 1139
BseRI GAGGAG 3 cut(s) 233, 739, 839
BseXI GCAGC 6 cut(s) 452, 456, 495, 519, 571, 1021
BsgI GTGCAG 3 cut(s) 455, 1028, 1087
Bsh1236I CGCG 3 cut(s) 404, 651, 653
BshFI GGCC 7 cut(s) 156, 260, 278, 418, 631, 870, 885
BshNI GGYRCC 3 cut(s) 53, 516, 1090
BshTI ACCGGT 1 cut(s) 144
BshVI ATCGAT 1 cut(s) 894
BsiHKAI GWGCWC 1 cut(s) 731
BsiHKCI CYCGRG 4 cut(s) 284, 341, 454, 693
BslFI GGGAC 5 cut(s) 32, 337, 535, 623, 1063
BslI CCNNNNNNNGG 8 cut(s) 63, 195, 455, 459, 460, 553, 815, 853
BsmAI GTCTC 1 cut(s) 373
BsmFI GGGAC 5 cut(s) 32, 337, 535, 623, 1063
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 7 cut(s) 156, 260, 278, 418, 631, 870, 885
BsoBI CYCGRG 4 cut(s) 284, 341, 454, 693
Bsp1286I GDGCHC 1 cut(s) 731
Bsp143I GATC 6 cut(s) 98, 163, 185, 248, 366, 409
BspACI CCGC 6 cut(s) 301, 317, 404, 506, 535, 649
BspANI GGCC 7 cut(s) 156, 260, 278, 418, 631, 870, 885
BspCNI CTCAG 1 cut(s) 435
BspDI ATCGAT 1 cut(s) 894
BspFNI CGCG 3 cut(s) 404, 651, 653
BspLI GGNNCC 9 cut(s) 24, 48, 55, 187, 261, 325, 518, 782, 1092
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 5 cut(s) 106, 180, 193, 256, 417
BspT107I GGYRCC 3 cut(s) 53, 516, 1090
BspTI CTTAAG 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 5 cut(s) 109, 199, 1066, 1107, 1139
BssAI RCCGGY 1 cut(s) 144
BssMI GATC 6 cut(s) 98, 163, 185, 248, 366, 409
BssNAI GTATAC 1 cut(s) 309
BssSI CACGAG 1 cut(s) 473
BssT1I CCWWGG 3 cut(s) 490, 809, 904
Bst1107I GTATAC 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 4 cut(s) 121, 554, 872, 1095
Bst4CI ACNGT 5 cut(s) 58, 274, 328, 525, 593
Bst6I CTCTTC 2 cut(s) 677, 794
BstAFI CTTAAG 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 3 cut(s) 151, 413, 422
BstENI CCTNNNNNAGG 1 cut(s) 813
BstF5I GGATG 6 cut(s) 72, 325, 433, 543, 741, 844
BstFNI CGCG 3 cut(s) 404, 651, 653
BstH2I RGCGCY 2 cut(s) 470, 797
BstHHI GCGC 3 cut(s) 469, 653, 796
BstKTI GATC 6 cut(s) 101, 166, 188, 251, 369, 412
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 6 cut(s) 98, 163, 185, 248, 366, 409
BstMWI GCNNNNNNNGC 4 cut(s) 125, 449, 538, 778
BstNI CCWGG 4 cut(s) 121, 554, 872, 1095
BstPAI GACNNNNGTC 1 cut(s) 1001
BstSFI CTRYAG 2 cut(s) 252, 521
BstUI CGCG 3 cut(s) 404, 651, 653
BstV1I GCAGC 6 cut(s) 452, 456, 495, 519, 571, 1021
BstV2I GAAGAC 2 cut(s) 105, 885
BstX2I RGATCY 3 cut(s) 185, 248, 409
BstYI RGATCY 3 cut(s) 185, 248, 409
BstZ17I GTATAC 1 cut(s) 309
Bsu15I ATCGAT 1 cut(s) 894
BsuI GTATCC 2 cut(s) 85, 387
BsuRI GGCC 7 cut(s) 156, 260, 278, 418, 631, 870, 885
BsuTUI ATCGAT 1 cut(s) 894
BtrI CACGTC 1 cut(s) 1003
BtsCI GGATG 6 cut(s) 72, 325, 433, 543, 741, 844
BtsI GCAGTG 1 cut(s) 1017
BtsIMutI CAGTG 5 cut(s) 279, 1017, 1073, 1114, 1132
Cac8I GCNNGC 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 529
CfoI GCGC 3 cut(s) 469, 653, 796
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 4 cut(s) 46, 259, 324, 868
Cfr9I CCCGGG 3 cut(s) 341, 454, 693
ClaI ATCGAT 1 cut(s) 894
CseI GACGC 3 cut(s) 410, 642, 995
Csp6I GTAC 7 cut(s) 54, 106, 148, 918, 1091, 1130, 1139
CspAI ACCGGT 1 cut(s) 144
CspCI CAANNNNNGTGG 2 cut(s) 608, 643
CviAII CATG 2 cut(s) 376, 994
CviQI GTAC 7 cut(s) 54, 106, 148, 918, 1091, 1130, 1139
DdeI CTNAG 3 cut(s) 151, 413, 422
DpnI GATC 6 cut(s) 100, 165, 187, 250, 368, 411
DpnII GATC 6 cut(s) 98, 163, 185, 248, 366, 409
DraIII CACNNNGTG 1 cut(s) 1006
DriI GACNNNNNGTC 1 cut(s) 907
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 2 cut(s) 677, 794
Eam1105I GACNNNNNGTC 1 cut(s) 907
EarI CTCTTC 2 cut(s) 677, 794
Ecl136II GAGCTC 1 cut(s) 729
Eco130I CCWWGG 3 cut(s) 490, 809, 904
Eco147I AGGCCT 1 cut(s) 418
Eco24I GRGCYC 1 cut(s) 731
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 46, 324
Eco53kI GAGCTC 1 cut(s) 729
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 4 cut(s) 284, 341, 454, 693
EcoICRI GAGCTC 1 cut(s) 729
EcoNI CCTNNNNNAGG 1 cut(s) 813
EcoO109I RGGNCCY 2 cut(s) 46, 259
EcoRI GAATTC 1 cut(s) 644
EcoRII CCWGG 4 cut(s) 119, 552, 870, 1093
EcoRV GATATC 1 cut(s) 139
EcoT14I CCWWGG 3 cut(s) 490, 809, 904
EcoT38I GRGCYC 1 cut(s) 731
ErhI CCWWGG 3 cut(s) 490, 809, 904
FaeI CATG 2 cut(s) 379, 997
FalI AAGNNNNNCTT 4 cut(s) 870, 902, 927, 959
FaqI GGGAC 5 cut(s) 32, 337, 535, 623, 1063
FatI CATG 2 cut(s) 375, 993
FblI GTMKAC 2 cut(s) 308, 900
Fnu4HI GCNGC 6 cut(s) 441, 470, 509, 533, 560, 1010
FokI GGATG 6 cut(s) 79, 332, 440, 550, 728, 851
FriOI GRGCYC 1 cut(s) 731
Fsp4HI GCNGC 6 cut(s) 441, 470, 509, 533, 560, 1010
FspBI CTAG 3 cut(s) 767, 773, 905
GlaI GCGC 3 cut(s) 468, 652, 795
GluI GCNGC 6 cut(s) 441, 470, 509, 533, 560, 1010
GsuI CTGGAG 1 cut(s) 968
HaeII RGCGCY 2 cut(s) 470, 797
HaeIII GGCC 7 cut(s) 156, 260, 278, 418, 631, 870, 885
HgaI GACGC 3 cut(s) 410, 642, 995
HhaI GCGC 3 cut(s) 469, 653, 796
Hin1II CATG 2 cut(s) 379, 997
Hin6I GCGC 3 cut(s) 467, 651, 794
HinP1I GCGC 3 cut(s) 467, 651, 794
HincII GTYRAC 1 cut(s) 901
HindII GTYRAC 1 cut(s) 901
HinfI GANTC 7 cut(s) 71, 221, 445, 478, 738, 1098, 1152
HphI GGTGA 2 cut(s) 245, 983
Hpy166II GTNNAC 4 cut(s) 309, 901, 974, 1132
Hpy188I TCNGA 6 cut(s) 76, 208, 226, 670, 715, 1151
Hpy188III TCNNGA 5 cut(s) 26, 284, 947, 1033, 1166
Hpy8I GTNNAC 4 cut(s) 309, 901, 974, 1132
Hpy99I CGWCG 5 cut(s) 106, 230, 338, 1007, 1028
HpyAV CCTTC 6 cut(s) 71, 355, 642, 896, 953, 1166
HpyCH4III ACNGT 5 cut(s) 58, 274, 328, 525, 593
HpyCH4IV ACGT 2 cut(s) 1002, 1026
HpyCH4V TGCA 4 cut(s) 254, 472, 1009, 1104
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 449, 538, 778
HpyF3I CTNAG 3 cut(s) 151, 413, 422
HpySE526I ACGT 2 cut(s) 1002, 1026
Hsp92II CATG 2 cut(s) 379, 997
HspAI GCGC 3 cut(s) 467, 651, 794
KpnI GGTACC 2 cut(s) 57, 1094
Kzo9I GATC 6 cut(s) 98, 163, 185, 248, 366, 409
LmnI GCTCC 3 cut(s) 726, 786, 994
Lsp1109I GCAGC 6 cut(s) 452, 456, 495, 519, 571, 1021
LweI GCATC 2 cut(s) 528, 832
MaeI CTAG 3 cut(s) 767, 773, 905
MaeII ACGT 2 cut(s) 1002, 1026
MaeIII GTNAC 2 cut(s) 268, 1111
MalI GATC 6 cut(s) 100, 165, 187, 250, 368, 411
MboI GATC 6 cut(s) 98, 163, 185, 248, 366, 409
MboII GAAGA 5 cut(s) 105, 694, 811, 890, 947
MfeI CAATTG 2 cut(s) 848, 930
MflI RGATCY 3 cut(s) 185, 248, 409
MhlI GDGCHC 1 cut(s) 731
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 4 cut(s) 167, 644, 848, 930
MluNI TGGCCA 1 cut(s) 278
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 249
Mox20I TGGCCA 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 942
MscI TGGCCA 1 cut(s) 278
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 2 cut(s) 374, 894
Msp20I TGGCCA 1 cut(s) 278
MspA1I CMGCKG 2 cut(s) 508, 562
MspCI CTTAAG 1 cut(s) 383
MunI CAATTG 2 cut(s) 848, 930
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 4 cut(s) 121, 554, 872, 1095
MvnI CGCG 3 cut(s) 404, 651, 653
MwoI GCNNNNNNNGC 4 cut(s) 125, 449, 538, 778
NdeII GATC 6 cut(s) 98, 163, 185, 248, 366, 409
NlaIII CATG 2 cut(s) 379, 997
NlaIV GGNNCC 9 cut(s) 24, 48, 55, 187, 261, 325, 518, 782, 1092
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 268
PasI CCCWGGG 1 cut(s) 553
PceI AGGCCT 1 cut(s) 418
PcsI WCGNNNNNNNCGW 2 cut(s) 101, 188
PctI GAATGC 1 cut(s) 577
PdmI GAANNNNTTC 1 cut(s) 942
PfeI GAWTC 6 cut(s) 71, 445, 478, 738, 1098, 1152
PflMI CCANNNNNTGG 1 cut(s) 853
PinAI ACCGGT 1 cut(s) 144
PkrI GCNGC 6 cut(s) 442, 471, 510, 534, 561, 1011
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PpuMI RGGWCCY 1 cut(s) 46
PshAI GACNNNNGTC 1 cut(s) 1001
Psp124BI GAGCTC 1 cut(s) 731
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 4 cut(s) 119, 552, 870, 1093
PspGI CCWGG 4 cut(s) 119, 552, 870, 1093
PspN4I GGNNCC 9 cut(s) 24, 48, 55, 187, 261, 325, 518, 782, 1092
PspPI GGNCC 4 cut(s) 46, 259, 324, 868
PspPPI RGGWCCY 1 cut(s) 46
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 529
PsuI RGATCY 3 cut(s) 185, 248, 409
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 7 cut(s) 55, 107, 149, 919, 1092, 1131, 1140
RsaNI GTAC 7 cut(s) 54, 106, 148, 918, 1091, 1130, 1139
RseI CAYNNNNRTG 2 cut(s) 374, 894
SacI GAGCTC 1 cut(s) 731
SalI GTCGAC 1 cut(s) 899
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 6 cut(s) 441, 470, 509, 533, 560, 1010
Sau3AI GATC 6 cut(s) 98, 163, 185, 248, 366, 409
Sau96I GGNCC 4 cut(s) 46, 259, 324, 868
SchI GAGTC 1 cut(s) 230
SduI GDGCHC 1 cut(s) 731
SfaNI GCATC 2 cut(s) 528, 832
SfcI CTRYAG 2 cut(s) 252, 521
SinI GGWCC 2 cut(s) 46, 324
SmaI CCCGGG 3 cut(s) 343, 456, 695
SmiMI CAYNNNNRTG 2 cut(s) 374, 894
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 4 cut(s) 167, 644, 848, 930
SseBI AGGCCT 1 cut(s) 418
SsiI CCGC 6 cut(s) 301, 317, 404, 506, 535, 649
SspMI CTAG 3 cut(s) 767, 773, 905
SstI GAGCTC 1 cut(s) 731
StuI AGGCCT 1 cut(s) 418
StyI CCWWGG 3 cut(s) 490, 809, 904
TaaI ACNGT 5 cut(s) 58, 274, 328, 525, 593
TaiI ACGT 2 cut(s) 1005, 1029
TaqI TCGA 5 cut(s) 191, 372, 894, 900, 911
TaqII GACCGA 1 cut(s) 915
TasI AATT 4 cut(s) 167, 644, 848, 930
TatI WGTACW 1 cut(s) 1129
TfiI GAWTC 6 cut(s) 71, 445, 478, 738, 1098, 1152
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 5 cut(s) 279, 1024, 1073, 1114, 1139
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 6 cut(s) 440, 469, 508, 532, 559, 1009
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 374, 730
TspMI CCCGGG 3 cut(s) 341, 454, 693
TspRI CASTG 5 cut(s) 279, 1024, 1073, 1114, 1139
Van91I CCANNNNNTGG 1 cut(s) 853
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 46, 324
XagI CCTNNNNNAGG 1 cut(s) 813
XapI RAATTY 1 cut(s) 644
XmaI CCCGGG 3 cut(s) 341, 454, 693
XmaJI CCTAGG 1 cut(s) 904
XmiI GTMKAC 2 cut(s) 308, 900
XmnI GAANNNNTTC 1 cut(s) 942
XspI CTAG 3 cut(s) 767, 773, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.