Rmu_sc0001045.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001045.1
OG0000087
Physical Location & Seq
Reverse (-)
6541 .. 8897
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001045.1_g000005.1.cds

Sequence Viewer

Length: 2067 bp
atgaatttctgggttttggataggctaacccttgtgcttctggttccagatatagcaagatttgaggtccccggtaccgtagttaggatggaatcagaagccaggggtggggatacgggatcgtcgtaccagtcctctgccaggcgagttgaaatggacatcgatcggtacctaggccgggtagaccaattagcggagaacacggggtcctcaactggggtgttctcggagagtagtggggagtcagacgagggcgagagcgagggtggatctgcggaggccccggtagttacagtggccattcccgagggcattccgaagccgaggtacacacttgcggacgggactgtatgcgacaaacctgggagaagcatgacgatgaaggagatcgtagacatgcggctgaagtgggggataccggatgcagtagagcttaggcctcttaaggatggggagatggccgcaaatcctgccccggggtgggtggcgctgcacgagaatcagctccaccaagggttatcgctacccttgccccggtgcctacagtatctgctgcggatgctgaacctgtcaccggggcagctaaccccgaatgccgttcgtcaaatatatagtatgatggccatgtgggacctgtgccagcaagggtggccatccataaatgagttccgcgcggtacaccgggtactgtactctaggaagcagtcttgtgcgggtacggtgacctttgccgctagggattacgagccgctagttaccgatatgcctacctcgatgagcaaaaggtggaggaacaaagtgttcctagctggtgggcggtggcagataaaaaataagaagtggcagctgaccggtactttccaagctatcggggaccagtcctatacgctatccgaagtagaaaagaagaggatagcccgggtatattccgtgtggtcagagaaagagaggagctcttataggttcatccggcactctatactttttaggctagggttaggatggctccccgtgaaagccccaaagaggaaaccccagaaaggtaaggaggaggacaggatggatgatgctcagctgatggacatgctgatgagccagggagaagatgccttgcacatcaacgtcgacctagggtcgaaaggcacgagtcggtttatcgaagagatccttttggagataaccgatgagggatacggtgaacctgatcccgacgctcctgtgacccacgccgcgcagccctccatggccgatgtcattacgatagctgaccccggggtgggaaaagtaccggccccagtgcctatttcgtctcgttccactgggaggatgaagtgttactccccgggtactggtgcgaagaggcagaagaaagatcacccaggatcagggccgtcgccttcccttggcctgttatctcccgtcgttccggtaatccccaagaagcccatcaagcagctgctgaatgaatacggggttgccgatgaaaagttcgtgcggtccatgcttggggatctgaaggacattgacctcgaccgggcactcttcaatgtgtacgccatcgacgccagcgaggaagatactcatctgaaggaggaggttagcaacctctccgggcaggtgaagtatcttcatggtgagaaggccaagctggagaaggagcgggactcgttgagggctgagatggccgcctttaagcagcagattgcggagcttgagggtgaggttgctgaggcgcgggaggaggtaaagaacgcccgggactccgagaaaaaggctgcggagtctgccgtctcatggaaggagaaaacagactctctggaggatcgccttcccgcagagaggcacgaggccgtggaggagtacaagtcctcggatgagcttatctctatgttggctgctgcccaagataagactgtcatcatgaagtttaaggagtgggtggcggccgggtacttagatgaagccaaatttaggcatggtctcctggagaaaaggaagaaggagcggggggcggcggccaagtccggtaccggtgggtctcagagtaccgatggagatcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

688

Amino Acids

76.41

Weight (kDa)

6.03

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1606
Acc36I ACCTGC 1 cut(s) 1606
Acc65I GGTACC 3 cut(s) 74, 168, 2027
AccB1I GGYRCC 4 cut(s) 74, 168, 537, 2027
AccBSI CCGCTC 2 cut(s) 1660, 2005
AccI GTMKAC 3 cut(s) 183, 393, 1125
AccII CGCG 4 cut(s) 672, 674, 1232, 1735
AclWI GGATC 7 cut(s) 127, 277, 1159, 1199, 1390, 1518, 1830
AcoI YGGCCR 8 cut(s) 297, 459, 621, 650, 1245, 1683, 1944, 2016
AcsI RAATTY 2 cut(s) 4, 1967
AcuI CTGAAG 3 cut(s) 425, 1535, 1607
AcyI GRCGYC 1 cut(s) 1563
AflII CTTAAG 1 cut(s) 443
AgeI ACCGGT 2 cut(s) 851, 2030
AgsI TTSAA 2 cut(s) 152, 1546
AhdI GACNNNNNGTC 1 cut(s) 1132
AjnI CCWGG 6 cut(s) 101, 140, 361, 1095, 1378, 1983
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
Alw21I GWGCWC 1 cut(s) 956
Alw26I GTCTC 4 cut(s) 1314, 1795, 1985, 2043
AlwI GGATC 7 cut(s) 127, 277, 1159, 1199, 1390, 1518, 1830
AlwNI CAGNNNCTG 2 cut(s) 550, 1459
Ama87I CYCGRG 6 cut(s) 305, 475, 918, 1271, 1342, 1755
ApoI RAATTY 2 cut(s) 4, 1967
AsiGI ACCGGT 2 cut(s) 851, 2030
Asp718I GGTACC 3 cut(s) 74, 168, 2027
AspA2I CCTAGG 2 cut(s) 172, 1129
AspLEI GCGC 4 cut(s) 490, 674, 1234, 1735
AspS9I GGNCC 8 cut(s) 67, 207, 280, 631, 874, 1291, 1388, 1497
AsuHPI GGTGA 7 cut(s) 564, 733, 1208, 1367, 1630, 1646, 1730
AvaI CYCGRG 6 cut(s) 305, 475, 918, 1271, 1342, 1755
AvaII GGWCC 5 cut(s) 67, 207, 631, 874, 1497
AvrII CCTAGG 2 cut(s) 172, 1129
BaeGI GKGCMC 1 cut(s) 1540
BaeI ACNNNNGTAYC 2 cut(s) 66, 99
BalI TGGCCA 3 cut(s) 299, 623, 652
BanI GGYRCC 4 cut(s) 74, 168, 537, 2027
BanII GRGCYC 1 cut(s) 956
BarI GAAGNNNNNNTAC 2 cut(s) 311, 343
BauI CACGAG 3 cut(s) 494, 1144, 1844
Bbv12I GWGCWC 1 cut(s) 956
BbvCI CCTCAGC 1 cut(s) 1728
BceAI ACGGC 4 cut(s) 581, 1375, 1772, 1835
BciT130I CCWGG 6 cut(s) 103, 142, 363, 1097, 1380, 1985
BciVI GTATCC 3 cut(s) 106, 408, 1184
BcoDI GTCTC 4 cut(s) 1314, 1795, 1985, 2043
BfaI CTAG 7 cut(s) 173, 696, 735, 752, 806, 992, 1130
BfmI CTRYAG 1 cut(s) 542
BfoI RGCGCY 1 cut(s) 491
BfrI CTTAAG 1 cut(s) 443
BfuAI ACCTGC 1 cut(s) 1606
BfuI GTATCC 3 cut(s) 106, 408, 1184
BlnI CCTAGG 2 cut(s) 172, 1129
BlpI GCTNAGC 1 cut(s) 1071
Bme18I GGWCC 5 cut(s) 67, 207, 631, 874, 1497
BmeRI GACNNNNNGTC 1 cut(s) 1132
BmeT110I CYCGRG 6 cut(s) 305, 475, 918, 1271, 1342, 1755
BmgT120I GGNCC 8 cut(s) 67, 207, 280, 631, 874, 1291, 1388, 1497
BmrI ACTGGG 3 cut(s) 225, 1289, 1329
BmsI GCATC 4 cut(s) 412, 549, 1057, 1096
BmuI ACTGGG 3 cut(s) 225, 1289, 1329
BplI GAGNNNNNCTC 6 cut(s) 938, 970, 1649, 1681, 1868, 1900
BpmI CTGGAG 3 cut(s) 1670, 1838, 2006
Bpu10I CCTNAGC 2 cut(s) 434, 1728
Bpu1102I GCTNAGC 1 cut(s) 1071
BpuEI CTTGAG 1 cut(s) 1733
Bsa29I ATCGAT 1 cut(s) 162
BsaBI GATNNNNATC 2 cut(s) 1581, 2055
BsaHI GRCGYC 1 cut(s) 1563
BsaI GGTCTC 2 cut(s) 1985, 2043
BsaWI WCCGGW 5 cut(s) 418, 851, 1426, 2024, 2030
BsaXI ACNNNNNCTCC 2 cut(s) 1850, 1880
Bse118I RCCGGY 3 cut(s) 851, 1288, 2030
Bse1I ACTGG 6 cut(s) 130, 220, 877, 1295, 1324, 1354
Bse8I GATNNNNATC 2 cut(s) 1581, 2055
BseBI CCWGG 6 cut(s) 103, 142, 363, 1097, 1380, 1985
BseCI ATCGAT 1 cut(s) 162
BseJI GATNNNNATC 2 cut(s) 1581, 2055
BseMII CTCAG 4 cut(s) 1085, 1668, 1719, 2054
BseNI ACTGG 6 cut(s) 130, 220, 877, 1295, 1324, 1354
BseRI GAGGAG 5 cut(s) 964, 1064, 1607, 1754, 1871
BseSI GKGCMC 1 cut(s) 1540
BseX3I CGGCCG 1 cut(s) 1944
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 4 cut(s) 672, 674, 1232, 1735
Bsh1285I CGRYCG 3 cut(s) 166, 1534, 1947
BshNI GGYRCC 4 cut(s) 74, 168, 537, 2027
BshTI ACCGGT 2 cut(s) 851, 2030
BshVI ATCGAT 1 cut(s) 162
BsiEI CGRYCG 3 cut(s) 166, 1534, 1947
BsiHKAI GWGCWC 1 cut(s) 956
BsiHKCI CYCGRG 6 cut(s) 305, 475, 918, 1271, 1342, 1755
BslFI GGGAC 6 cut(s) 53, 358, 644, 887, 1676, 1772
BsmAI GTCTC 4 cut(s) 1314, 1795, 1985, 2043
BsmBI CGTCTC 2 cut(s) 1314, 1795
BsmFI GGGAC 6 cut(s) 53, 358, 644, 887, 1676, 1772
BsmI GAATGC 2 cut(s) 312, 598
Bso31I GGTCTC 2 cut(s) 1985, 2043
BsoBI CYCGRG 6 cut(s) 305, 475, 918, 1271, 1342, 1755
Bsp1286I GDGCHC 2 cut(s) 956, 1540
Bsp1720I GCTNAGC 1 cut(s) 1071
Bsp19I CCATGG 1 cut(s) 1242
BspCNI CTCAG 4 cut(s) 1084, 1669, 1720, 2053
BspDI ATCGAT 1 cut(s) 162
BspFNI CGCG 4 cut(s) 672, 674, 1232, 1735
BspHI TCATGA 1 cut(s) 1920
BspMI ACCTGC 1 cut(s) 1606
BspPI GGATC 7 cut(s) 127, 277, 1159, 1199, 1390, 1518, 1830
BspT107I GGYRCC 4 cut(s) 74, 168, 537, 2027
BspTI CTTAAG 1 cut(s) 443
BspTNI GGTCTC 2 cut(s) 1985, 2043
BsrBI CCGCTC 2 cut(s) 1660, 2005
BsrFI RCCGGY 3 cut(s) 851, 1288, 2030
BsrI ACTGG 6 cut(s) 130, 220, 877, 1295, 1324, 1354
BssAI RCCGGY 3 cut(s) 851, 1288, 2030
BssNI GRCGYC 1 cut(s) 1563
BssSI CACGAG 3 cut(s) 494, 1144, 1844
BssT1I CCWWGG 5 cut(s) 172, 511, 1129, 1242, 1402
Bst2BI CACGAG 3 cut(s) 494, 1144, 1844
Bst2UI CCWGG 6 cut(s) 103, 142, 363, 1097, 1380, 1985
Bst4CI ACNGT 8 cut(s) 79, 295, 349, 546, 690, 721, 1196, 1915
Bst6I CTCTTC 4 cut(s) 902, 1155, 1352, 1547
BstACI GRCGYC 1 cut(s) 1563
BstAFI CTTAAG 1 cut(s) 443
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 641, 1567
BstDEI CTNAG 6 cut(s) 434, 1071, 1677, 1728, 1954, 2040
BstDSI CCRYGG 2 cut(s) 1242, 1851
BstEII GGTNACC 1 cut(s) 721
BstENI CCTNNNNNAGG 1 cut(s) 139
BstFNI CGCG 4 cut(s) 672, 674, 1232, 1735
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 4 cut(s) 490, 674, 1234, 1735
BstMAI GTCTC 4 cut(s) 1314, 1795, 1985, 2043
BstMCI CGRYCG 3 cut(s) 166, 1534, 1947
BstMWI GCNNNNNNNGC 9 cut(s) 470, 529, 559, 649, 1450, 1501, 1562, 1682, 1784
BstNI CCWGG 6 cut(s) 103, 142, 363, 1097, 1380, 1985
BstNSI RCATGY 2 cut(s) 400, 1087
BstPI GGTNACC 1 cut(s) 721
BstSFI CTRYAG 1 cut(s) 542
BstSLI GKGCMC 1 cut(s) 1540
BstUI CGCG 4 cut(s) 672, 674, 1232, 1735
BstX2I RGATCY 3 cut(s) 269, 1164, 1510
BstYI RGATCY 3 cut(s) 269, 1164, 1510
BstZI CGGCCG 1 cut(s) 1944
Bsu15I ATCGAT 1 cut(s) 162
BsuI GTATCC 3 cut(s) 106, 408, 1184
BsuTUI ATCGAT 1 cut(s) 162
BtgI CCRYGG 2 cut(s) 1242, 1851
BtsIMutI CAGTG 3 cut(s) 300, 1302, 1317
BveI ACCTGC 1 cut(s) 1606
Cac8I GCNNGC 2 cut(s) 641, 1567
CaiI CAGNNNCTG 2 cut(s) 550, 1459
CciI TCATGA 1 cut(s) 1920
CfoI GCGC 4 cut(s) 490, 674, 1234, 1735
Cfr10I RCCGGY 3 cut(s) 851, 1288, 2030
Cfr13I GGNCC 8 cut(s) 67, 207, 280, 631, 874, 1291, 1388, 1497
Cfr9I CCCGGG 5 cut(s) 475, 918, 1271, 1342, 1755
ClaI ATCGAT 1 cut(s) 162
CseI GACGC 2 cut(s) 1220, 1571
CspAI ACCGGT 2 cut(s) 851, 2030
DdeI CTNAG 6 cut(s) 434, 1071, 1677, 1728, 1954, 2040
DriI GACNNNNNGTC 1 cut(s) 1132
EaeI YGGCCR 8 cut(s) 297, 459, 621, 650, 1245, 1683, 1944, 2016
EagI CGGCCG 1 cut(s) 1944
Eam1104I CTCTTC 4 cut(s) 902, 1155, 1352, 1547
Eam1105I GACNNNNNGTC 1 cut(s) 1132
EarI CTCTTC 4 cut(s) 902, 1155, 1352, 1547
Ecl136II GAGCTC 1 cut(s) 954
EclXI CGGCCG 1 cut(s) 1944
Eco130I CCWWGG 5 cut(s) 172, 511, 1129, 1242, 1402
Eco147I AGGCCT 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 956
Eco31I GGTCTC 2 cut(s) 1985, 2043
Eco47I GGWCC 5 cut(s) 67, 207, 631, 874, 1497
Eco52I CGGCCG 1 cut(s) 1944
Eco53kI GAGCTC 1 cut(s) 954
Eco57I CTGAAG 3 cut(s) 425, 1535, 1607
Eco88I CYCGRG 6 cut(s) 305, 475, 918, 1271, 1342, 1755
Eco91I GGTNACC 1 cut(s) 721
EcoICRI GAGCTC 1 cut(s) 954
EcoNI CCTNNNNNAGG 1 cut(s) 139
EcoO109I RGGNCCY 4 cut(s) 67, 207, 280, 631
EcoO65I GGTNACC 1 cut(s) 721
EcoRII CCWGG 6 cut(s) 101, 140, 361, 1095, 1378, 1983
EcoT14I CCWWGG 5 cut(s) 172, 511, 1129, 1242, 1402
EcoT38I GRGCYC 1 cut(s) 956
ErhI CCWWGG 5 cut(s) 172, 511, 1129, 1242, 1402
Esp3I CGTCTC 2 cut(s) 1314, 1795
FalI AAGNNNNNCTT 2 cut(s) 1152, 1184
FaqI GGGAC 6 cut(s) 53, 358, 644, 887, 1676, 1772
FauI CCCGC 5 cut(s) 706, 1653, 1728, 1840, 1998
FblI GTMKAC 3 cut(s) 183, 393, 1125
FriOI GRGCYC 1 cut(s) 956
FspBI CTAG 7 cut(s) 173, 696, 735, 752, 806, 992, 1130
GlaI GCGC 4 cut(s) 489, 673, 1233, 1734
GsuI CTGGAG 3 cut(s) 1670, 1838, 2006
HaeII RGCGCY 1 cut(s) 491
HgaI GACGC 2 cut(s) 1220, 1571
HhaI GCGC 4 cut(s) 490, 674, 1234, 1735
Hin1I GRCGYC 1 cut(s) 1563
Hin6I GCGC 4 cut(s) 488, 672, 1232, 1733
HinP1I GCGC 4 cut(s) 488, 672, 1232, 1733
HincII GTYRAC 1 cut(s) 1126
HindII GTYRAC 1 cut(s) 1126
HinfI GANTC 8 cut(s) 92, 242, 499, 1147, 1664, 1760, 1781, 1811
HphI GGTGA 7 cut(s) 564, 733, 1208, 1367, 1630, 1646, 1730
Hpy166II GTNNAC 7 cut(s) 184, 330, 394, 679, 1126, 1199, 1552
Hpy188III TCNNGA 5 cut(s) 47, 305, 1208, 1817, 1921
Hpy8I GTNNAC 7 cut(s) 184, 330, 394, 679, 1126, 1199, 1552
Hpy99I CGWCG 6 cut(s) 127, 1127, 1214, 1396, 1424, 1565
HpyAV CCTTC 9 cut(s) 376, 1407, 1510, 1582, 1633, 1648, 1792, 1838, 1993
HpyCH4III ACNGT 8 cut(s) 79, 295, 349, 546, 690, 721, 1196, 1915
HpyCH4IV ACGT 1 cut(s) 1122
HpyCH4V TGCA 3 cut(s) 425, 493, 1114
HpyF10VI GCNNNNNNNGC 9 cut(s) 470, 529, 559, 649, 1450, 1501, 1562, 1682, 1784
HpyF3I CTNAG 6 cut(s) 434, 1071, 1677, 1728, 1954, 2040
HpySE526I ACGT 1 cut(s) 1122
Hsp92I GRCGYC 1 cut(s) 1563
HspAI GCGC 4 cut(s) 488, 672, 1232, 1733
KpnI GGTACC 3 cut(s) 78, 172, 2031
LmnI GCTCC 7 cut(s) 510, 951, 1011, 1219, 1657, 1708, 2002
LweI GCATC 4 cut(s) 412, 549, 1057, 1096
MaeI CTAG 7 cut(s) 173, 696, 735, 752, 806, 992, 1130
MaeII ACGT 1 cut(s) 1122
MaeIII GTNAC 6 cut(s) 289, 570, 721, 754, 1219, 1334
MbiI CCGCTC 2 cut(s) 1660, 2005
MboII GAAGA 9 cut(s) 919, 1115, 1172, 1369, 1378, 1534, 1586, 1619, 2008
MflI RGATCY 3 cut(s) 269, 1164, 1510
MhlI GDGCHC 2 cut(s) 956, 1540
MlsI TGGCCA 3 cut(s) 299, 623, 652
MluCI AATT 3 cut(s) 4, 188, 1967
MluNI TGGCCA 3 cut(s) 299, 623, 652
MlyI GAGTC 6 cut(s) 251, 1156, 1658, 1754, 1790, 1805
Mox20I TGGCCA 3 cut(s) 299, 623, 652
MscI TGGCCA 3 cut(s) 299, 623, 652
MseI TTAA 3 cut(s) 444, 1692, 1929
MslI CAYNNNNRTG 2 cut(s) 377, 1088
Msp20I TGGCCA 3 cut(s) 299, 623, 652
MspA1I CMGCKG 3 cut(s) 847, 1075, 1456
MspCI CTTAAG 1 cut(s) 443
Mva1269I GAATGC 2 cut(s) 312, 598
MvaI CCWGG 6 cut(s) 103, 142, 363, 1097, 1380, 1985
MvnI CGCG 4 cut(s) 672, 674, 1232, 1735
MwoI GCNNNNNNNGC 9 cut(s) 470, 529, 559, 649, 1450, 1501, 1562, 1682, 1784
NcoI CCATGG 1 cut(s) 1242
NmeAIII GCCGAG 1 cut(s) 348
NmuCI GTSAC 3 cut(s) 570, 721, 1219
NspI RCATGY 2 cut(s) 400, 1087
PagI TCATGA 1 cut(s) 1920
PaqCI CACCTGC 1 cut(s) 1606
PceI AGGCCT 1 cut(s) 439
PcsI WCGNNNNNNNCGW 4 cut(s) 122, 1142, 1476, 1566
PctI GAATGC 2 cut(s) 312, 598
PfeI GAWTC 2 cut(s) 92, 499
PfoI TCCNGGA 1 cut(s) 1983
PinAI ACCGGT 2 cut(s) 851, 2030
Ple19I CGATCG 1 cut(s) 166
PleI GAGTC 6 cut(s) 250, 1155, 1658, 1754, 1789, 1805
PpsI GAGTC 6 cut(s) 250, 1155, 1658, 1754, 1789, 1805
PpuMI RGGWCCY 3 cut(s) 67, 207, 631
Psp124BI GAGCTC 1 cut(s) 956
Psp5II RGGWCCY 3 cut(s) 67, 207, 631
Psp6I CCWGG 6 cut(s) 101, 140, 361, 1095, 1378, 1983
PspEI GGTNACC 1 cut(s) 721
PspGI CCWGG 6 cut(s) 101, 140, 361, 1095, 1378, 1983
PspPI GGNCC 8 cut(s) 67, 207, 280, 631, 874, 1291, 1388, 1497
PspPPI RGGWCCY 3 cut(s) 67, 207, 631
PstNI CAGNNNCTG 2 cut(s) 550, 1459
PsuI RGATCY 3 cut(s) 269, 1164, 1510
PvuI CGATCG 1 cut(s) 166
PvuII CAGCTG 3 cut(s) 847, 1075, 1456
RseI CAYNNNNRTG 2 cut(s) 377, 1088
SacI GAGCTC 1 cut(s) 956
SalI GTCGAC 1 cut(s) 1124
SaqAI TTAA 3 cut(s) 444, 1692, 1929
Sau96I GGNCC 8 cut(s) 67, 207, 280, 631, 874, 1291, 1388, 1497
SchI GAGTC 6 cut(s) 251, 1156, 1658, 1754, 1790, 1805
SduI GDGCHC 2 cut(s) 956, 1540
SfaNI GCATC 4 cut(s) 412, 549, 1057, 1096
SfcI CTRYAG 1 cut(s) 542
SinI GGWCC 5 cut(s) 67, 207, 631, 874, 1497
SmaI CCCGGG 5 cut(s) 477, 920, 1273, 1344, 1757
SmiMI CAYNNNNRTG 2 cut(s) 377, 1088
SmlI CTYRAG 2 cut(s) 443, 1712
SmoI CTYRAG 2 cut(s) 443, 1712
Sse9I AATT 3 cut(s) 4, 188, 1967
SseBI AGGCCT 1 cut(s) 439
SspMI CTAG 7 cut(s) 173, 696, 735, 752, 806, 992, 1130
SstI GAGCTC 1 cut(s) 956
StuI AGGCCT 1 cut(s) 439
StyI CCWWGG 5 cut(s) 172, 511, 1129, 1242, 1402
TaaI ACNGT 8 cut(s) 79, 295, 349, 546, 690, 721, 1196, 1915
TaiI ACGT 1 cut(s) 1125
TaqI TCGA 7 cut(s) 162, 773, 1125, 1136, 1158, 1530, 1560
TasI AATT 3 cut(s) 4, 188, 1967
TatI WGTACW 2 cut(s) 690, 1860
TauI GCSGC 9 cut(s) 403, 464, 734, 751, 1232, 1688, 1946, 2015, 2018
TfiI GAWTC 2 cut(s) 92, 499
Tru1I TTAA 3 cut(s) 444, 1692, 1929
Tru9I TTAA 3 cut(s) 444, 1692, 1929
TscAI CASTG 3 cut(s) 300, 1302, 1324
TseFI GTSAC 3 cut(s) 570, 721, 1219
Tsp45I GTSAC 3 cut(s) 570, 721, 1219
TspDTI ATGAA 9 cut(s) 17, 395, 955, 1343, 1479, 1497, 1619, 1937, 1974
TspGWI ACGGA 1 cut(s) 919
TspMI CCCGGG 5 cut(s) 475, 918, 1271, 1342, 1755
TspRI CASTG 3 cut(s) 300, 1302, 1324
Vha464I CTTAAG 1 cut(s) 443
VpaK11BI GGWCC 5 cut(s) 67, 207, 631, 874, 1497
XagI CCTNNNNNAGG 1 cut(s) 139
XapI RAATTY 2 cut(s) 4, 1967
XceI RCATGY 2 cut(s) 400, 1087
XmaI CCCGGG 5 cut(s) 475, 918, 1271, 1342, 1755
XmaJI CCTAGG 2 cut(s) 172, 1129
XmiI GTMKAC 3 cut(s) 183, 393, 1125
XspI CTAG 7 cut(s) 173, 696, 735, 752, 806, 992, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.