transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 673 |
| AciI | CCGC | 2 cut(s) | 280, 503 |
| AclWI | GGATC | 1 cut(s) | 686 |
| AcuI | CTGAAG | 1 cut(s) | 23 |
| AdeI | CACNNNGTG | 1 cut(s) | 225 |
| AfaI | GTAC | 4 cut(s) | 44, 278, 316, 320 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 46, 75, 673, 701 |
| AgsI | TTSAA | 1 cut(s) | 255 |
| AjnI | CCWGG | 3 cut(s) | 108, 172, 337 |
| AluBI | AGCT | 4 cut(s) | 55, 103, 425, 532 |
| AluI | AGCT | 4 cut(s) | 55, 103, 425, 532 |
| Alw26I | GTCTC | 2 cut(s) | 459, 480 |
| AlwI | GGATC | 1 cut(s) | 686 |
| Ama87I | CYCGRG | 2 cut(s) | 46, 426 |
| AoxI | GGCC | 4 cut(s) | 35, 112, 248, 270 |
| ApeKI | GCWGC | 3 cut(s) | 59, 199, 500 |
| AspS9I | GGNCC | 3 cut(s) | 36, 112, 270 |
| AsuC2I | CCSGG | 2 cut(s) | 47, 48 |
| AsuHPI | GGTGA | 2 cut(s) | 62, 656 |
| AvaI | CYCGRG | 2 cut(s) | 46, 426 |
| BauI | CACGAG | 1 cut(s) | 92 |
| BbvCI | CCTCAGC | 1 cut(s) | 152 |
| BbvI | GCAGC | 3 cut(s) | 46, 211, 512 |
| BccI | CCATC | 3 cut(s) | 667, 669, 706 |
| BceAI | ACGGC | 1 cut(s) | 257 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 479, 513 |
| BciT130I | CCWGG | 3 cut(s) | 110, 174, 339 |
| BclI | TGATCA | 1 cut(s) | 216 |
| BcnI | CCSGG | 2 cut(s) | 47, 48 |
| BcoDI | GTCTC | 2 cut(s) | 459, 480 |
| BfaI | CTAG | 2 cut(s) | 305, 354 |
| BisI | GCNGC | 3 cut(s) | 60, 200, 501 |
| BlpI | GCTNAGC | 1 cut(s) | 209 |
| BlsI | GCNGC | 3 cut(s) | 61, 201, 502 |
| Bme1390I | CCNGG | 5 cut(s) | 47, 48, 110, 174, 339 |
| BmeT110I | CYCGRG | 2 cut(s) | 46, 426 |
| BmgT120I | GGNCC | 3 cut(s) | 36, 112, 270 |
| BmiI | GGNNCC | 1 cut(s) | 38 |
| BmrFI | CCNGG | 5 cut(s) | 47, 48, 110, 174, 339 |
| BmsI | GCATC | 4 cut(s) | 147, 181, 487, 698 |
| BpmI | CTGGAG | 2 cut(s) | 92, 156 |
| Bpu10I | CCTNAGC | 1 cut(s) | 152 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 209 |
| BpuMI | CCSGG | 2 cut(s) | 47, 48 |
| BsaAI | YACGTR | 1 cut(s) | 318 |
| BsaI | GGTCTC | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 4 cut(s) | 46, 109, 173, 337 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 477, 507 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 46, 75, 673, 701 |
| BseBI | CCWGG | 3 cut(s) | 110, 174, 339 |
| BseDI | CCNNGG | 4 cut(s) | 46, 109, 173, 337 |
| BseGI | GGATG | 3 cut(s) | 162, 333, 457 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 46, 75, 673, 701 |
| BseMII | CTCAG | 3 cut(s) | 123, 143, 200 |
| BseRI | GAGGAG | 2 cut(s) | 472, 475 |
| BseXI | GCAGC | 3 cut(s) | 46, 211, 512 |
| BseYI | CCCAGC | 1 cut(s) | 520 |
| BsgI | GTGCAG | 1 cut(s) | 74 |
| BshFI | GGCC | 4 cut(s) | 37, 114, 250, 272 |
| BsiHKCI | CYCGRG | 2 cut(s) | 46, 426 |
| BsiSI | CCGG | 1 cut(s) | 47 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 46, 75, 673, 701 |
| BsmAI | GTCTC | 2 cut(s) | 459, 480 |
| BsmBI | CGTCTC | 1 cut(s) | 480 |
| BsmI | GAATGC | 1 cut(s) | 12 |
| BsnI | GGCC | 4 cut(s) | 37, 114, 250, 272 |
| Bso31I | GGTCTC | 1 cut(s) | 459 |
| BsoBI | CYCGRG | 2 cut(s) | 46, 426 |
| Bsp143I | GATC | 2 cut(s) | 216, 691 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 209 |
| BspACI | CCGC | 2 cut(s) | 280, 503 |
| BspANI | GGCC | 4 cut(s) | 37, 114, 250, 272 |
| BspCNI | CTCAG | 3 cut(s) | 124, 144, 201 |
| BspLI | GGNNCC | 1 cut(s) | 38 |
| BspPI | GGATC | 1 cut(s) | 686 |
| BspTNI | GGTCTC | 1 cut(s) | 459 |
| BssECI | CCNNGG | 4 cut(s) | 46, 109, 173, 337 |
| BssMI | GATC | 2 cut(s) | 216, 691 |
| BssSI | CACGAG | 1 cut(s) | 92 |
| Bst2BI | CACGAG | 1 cut(s) | 92 |
| Bst2UI | CCWGG | 3 cut(s) | 110, 174, 339 |
| Bst4CI | ACNGT | 2 cut(s) | 323, 399 |
| Bst6I | CTCTTC | 1 cut(s) | 646 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 148, 205 |
| BstBAI | YACGTR | 1 cut(s) | 318 |
| BstC8I | GCNNGC | 2 cut(s) | 57, 122 |
| BstDEI | CTNAG | 5 cut(s) | 32, 132, 152, 209, 547 |
| BstF5I | GGATG | 3 cut(s) | 162, 333, 457 |
| BstKTI | GATC | 2 cut(s) | 219, 694 |
| BstMAI | GTCTC | 2 cut(s) | 459, 480 |
| BstMBI | GATC | 2 cut(s) | 216, 691 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 148, 157, 184, 205 |
| BstNI | CCWGG | 3 cut(s) | 110, 174, 339 |
| BstNSI | RCATGY | 1 cut(s) | 124 |
| BstSCI | CCNGG | 5 cut(s) | 45, 46, 108, 172, 337 |
| BstSNI | TACGTA | 1 cut(s) | 318 |
| BstV1I | GCAGC | 3 cut(s) | 46, 211, 512 |
| BsuRI | GGCC | 4 cut(s) | 37, 114, 250, 272 |
| BtsCI | GGATG | 3 cut(s) | 162, 333, 457 |
| BtsIMutI | CAGTG | 1 cut(s) | 395 |
| Cac8I | GCNNGC | 2 cut(s) | 57, 122 |
| Cfr13I | GGNCC | 3 cut(s) | 36, 112, 270 |
| Cfr9I | CCCGGG | 1 cut(s) | 46 |
| CseI | GACGC | 1 cut(s) | 193 |
| Csp6I | GTAC | 4 cut(s) | 43, 277, 315, 319 |
| CviAII | CATG | 6 cut(s) | 121, 214, 241, 556, 668, 723 |
| CviQI | GTAC | 4 cut(s) | 43, 277, 315, 319 |
| DdeI | CTNAG | 5 cut(s) | 32, 132, 152, 209, 547 |
| DpnI | GATC | 2 cut(s) | 218, 693 |
| DpnII | GATC | 2 cut(s) | 216, 691 |
| DraIII | CACNNNGTG | 1 cut(s) | 225 |
| Eam1104I | CTCTTC | 1 cut(s) | 646 |
| EarI | CTCTTC | 1 cut(s) | 646 |
| Eco105I | TACGTA | 1 cut(s) | 318 |
| Eco31I | GGTCTC | 1 cut(s) | 459 |
| Eco57I | CTGAAG | 1 cut(s) | 23 |
| Eco88I | CYCGRG | 2 cut(s) | 46, 426 |
| EcoO109I | RGGNCCY | 2 cut(s) | 36, 112 |
| EcoRII | CCWGG | 3 cut(s) | 108, 172, 337 |
| Esp3I | CGTCTC | 1 cut(s) | 480 |
| FaeI | CATG | 6 cut(s) | 124, 217, 244, 559, 671, 726 |
| FatI | CATG | 6 cut(s) | 120, 213, 240, 555, 667, 722 |
| FauI | CCCGC | 1 cut(s) | 496 |
| FbaI | TGATCA | 1 cut(s) | 216 |
| Fnu4HI | GCNGC | 3 cut(s) | 60, 200, 501 |
| FokI | GGATG | 3 cut(s) | 169, 320, 464 |
| Fsp4HI | GCNGC | 3 cut(s) | 60, 200, 501 |
| FspBI | CTAG | 2 cut(s) | 305, 354 |
| GluI | GCNGC | 3 cut(s) | 60, 200, 501 |
| GsaI | CCCAGC | 1 cut(s) | 524 |
| GsuI | CTGGAG | 2 cut(s) | 92, 156 |
| HaeIII | GGCC | 4 cut(s) | 37, 114, 250, 272 |
| HapII | CCGG | 1 cut(s) | 47 |
| HgaI | GACGC | 1 cut(s) | 193 |
| Hin1II | CATG | 6 cut(s) | 124, 217, 244, 559, 671, 726 |
| HincII | GTYRAC | 1 cut(s) | 331 |
| HindII | GTYRAC | 1 cut(s) | 331 |
| HinfI | GANTC | 1 cut(s) | 97 |
| HpaII | CCGG | 1 cut(s) | 47 |
| HphI | GGTGA | 2 cut(s) | 62, 656 |
| Hpy166II | GTNNAC | 2 cut(s) | 277, 331 |
| Hpy188I | TCNGA | 2 cut(s) | 403, 485 |
| Hpy188III | TCNNGA | 1 cut(s) | 17 |
| Hpy8I | GTNNAC | 2 cut(s) | 277, 331 |
| HpyAV | CCTTC | 1 cut(s) | 261 |
| HpyCH4III | ACNGT | 2 cut(s) | 323, 399 |
| HpyCH4IV | ACGT | 2 cut(s) | 317, 327 |
| HpyCH4V | TGCA | 7 cut(s) | 91, 120, 142, 500, 542, 682, 711 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 148, 157, 184, 205 |
| HpyF3I | CTNAG | 5 cut(s) | 32, 132, 152, 209, 547 |
| HpySE526I | ACGT | 2 cut(s) | 317, 327 |
| Hsp92II | CATG | 6 cut(s) | 124, 217, 244, 559, 671, 726 |
| Ksp22I | TGATCA | 1 cut(s) | 216 |
| Kzo9I | GATC | 2 cut(s) | 216, 691 |
| Lsp1109I | GCAGC | 3 cut(s) | 46, 211, 512 |
| LweI | GCATC | 4 cut(s) | 147, 181, 487, 698 |
| MaeI | CTAG | 2 cut(s) | 305, 354 |
| MaeII | ACGT | 2 cut(s) | 317, 327 |
| MaeIII | GTNAC | 1 cut(s) | 323 |
| MalI | GATC | 2 cut(s) | 218, 693 |
| MboI | GATC | 2 cut(s) | 216, 691 |
| MboII | GAAGA | 2 cut(s) | 572, 663 |
| MluCI | AATT | 2 cut(s) | 600, 639 |
| MmeI | TCCRAC | 1 cut(s) | 381 |
| MnlI | CCTC | 9 cut(s) | 69, 125, 147, 373, 397, 450, 453, 583, 647 |
| MslI | CAYNNNNRTG | 3 cut(s) | 666, 687, 716 |
| MspA1I | CMGCKG | 1 cut(s) | 503 |
| MspI | CCGG | 1 cut(s) | 47 |
| MspR9I | CCNGG | 5 cut(s) | 47, 48, 110, 174, 339 |
| Mva1269I | GAATGC | 1 cut(s) | 12 |
| MvaI | CCWGG | 3 cut(s) | 110, 174, 339 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 148, 157, 184, 205 |
| NciI | CCSGG | 2 cut(s) | 47, 48 |
| NdeII | GATC | 2 cut(s) | 216, 691 |
| NlaIII | CATG | 6 cut(s) | 124, 217, 244, 559, 671, 726 |
| NlaIV | GGNNCC | 1 cut(s) | 38 |
| NmeAIII | GCCGAG | 1 cut(s) | 513 |
| NmuCI | GTSAC | 1 cut(s) | 323 |
| NspI | RCATGY | 1 cut(s) | 124 |
| PaeI | GCATGC | 1 cut(s) | 124 |
| PaeR7I | CTCGAG | 1 cut(s) | 426 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 191 |
| PctI | GAATGC | 1 cut(s) | 12 |
| PfeI | GAWTC | 1 cut(s) | 97 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 673 |
| PkrI | GCNGC | 3 cut(s) | 61, 201, 502 |
| Ppu21I | YACGTR | 1 cut(s) | 318 |
| Psp6I | CCWGG | 3 cut(s) | 108, 172, 337 |
| PspFI | CCCAGC | 1 cut(s) | 520 |
| PspGI | CCWGG | 3 cut(s) | 108, 172, 337 |
| PspN4I | GGNNCC | 1 cut(s) | 38 |
| PspPI | GGNCC | 3 cut(s) | 36, 112, 270 |
| PspXI | VCTCGAGB | 1 cut(s) | 426 |
| RsaI | GTAC | 4 cut(s) | 44, 278, 316, 320 |
| RsaNI | GTAC | 4 cut(s) | 43, 277, 315, 319 |
| RseI | CAYNNNNRTG | 3 cut(s) | 666, 687, 716 |
| SatI | GCNGC | 3 cut(s) | 60, 200, 501 |
| Sau3AI | GATC | 2 cut(s) | 216, 691 |
| Sau96I | GGNCC | 3 cut(s) | 36, 112, 270 |
| ScrFI | CCNGG | 5 cut(s) | 47, 48, 110, 174, 339 |
| SetI | ASST | 9 cut(s) | 57, 80, 105, 320, 330, 408, 427, 534, 658 |
| SfaNI | GCATC | 4 cut(s) | 147, 181, 487, 698 |
| Sfr274I | CTCGAG | 1 cut(s) | 426 |
| SlaI | CTCGAG | 1 cut(s) | 426 |
| SmaI | CCCGGG | 1 cut(s) | 48 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 666, 687, 716 |
| SmlI | CTYRAG | 1 cut(s) | 426 |
| SmoI | CTYRAG | 1 cut(s) | 426 |
| SnaBI | TACGTA | 1 cut(s) | 318 |
| SphI | GCATGC | 1 cut(s) | 124 |
| Sse9I | AATT | 2 cut(s) | 600, 639 |
| SsiI | CCGC | 2 cut(s) | 280, 503 |
| SspI | AATATT | 1 cut(s) | 146 |
| SspMI | CTAG | 2 cut(s) | 305, 354 |
| StyD4I | CCNGG | 5 cut(s) | 45, 46, 108, 172, 337 |
| TaaI | ACNGT | 2 cut(s) | 323, 399 |
| TaiI | ACGT | 2 cut(s) | 320, 330 |
| TaqI | TCGA | 1 cut(s) | 427 |
| TasI | AATT | 2 cut(s) | 600, 639 |
| TfiI | GAWTC | 1 cut(s) | 97 |
| TscAI | CASTG | 1 cut(s) | 402 |
| TseFI | GTSAC | 1 cut(s) | 323 |
| TseI | GCWGC | 3 cut(s) | 59, 199, 500 |
| Tsp45I | GTSAC | 1 cut(s) | 323 |
| TspDTI | ATGAA | 1 cut(s) | 36 |
| TspMI | CCCGGG | 1 cut(s) | 46 |
| TspRI | CASTG | 1 cut(s) | 402 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 673 |
| XceI | RCATGY | 1 cut(s) | 124 |
| XhoI | CTCGAG | 1 cut(s) | 426 |
| XmaI | CCCGGG | 1 cut(s) | 46 |
| XspI | CTAG | 2 cut(s) | 305, 354 |