Rmu_sc0011375.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011375.1
OG0000087
Physical Location & Seq
Reverse (-)
19406 .. 21320
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011375.1_g000005.1.cds

Sequence Viewer

Length: 1416 bp
atggatcgattgtctgccgaagaagagtcttctgccaggcaagctgaagtggatatcgaccggtacttaggccaagtagatcaattagcagagaacacggggtactcgactggggtgttctcggagagtagtgaggagtcggacgagggtgagagcgagggtggatctgcggaggccccggtagtcacaatggccattcccgagggcattccgaagccgaggtatacacttgcggatggaaccgtatgcgacgaacccgggagaagtatgacgatgaaggagatcatcgacatgcgactgaggtgggggataccgaacgcggtggagcttaggcctctcagggatggagagacggccgcgaatcctgccccggggtgggtggcgttgcacgagaatcagttccaccaagggttatcgctaccgctgccccggtgcctacagtatctgttgcggatgttgaacctgtcactggggcagttgaccccgaatgccattcgccaactactcagtatgatggctatgtgggacctgtgccaacaagggtggcattccataaacgaattctgcgcggtacaccgggtactgtactcaaggaagcagtcttgtgcgggtatggttacttttgccgctagggactgcgagccactagttaccgacatgcctacctcgatgagcaaaaggtggaggaacaaggtgttcctagatggggggcggtggcaaataaaaaataagaagtggcagctgaccggtgccttccaagctatcggggaccagtcctatactctatccgaagtagaaaagaagaggatagcccgggtatatgccttttggtcagagaaagagaggagttcttatagattcatccggcactctatactttataggctagggctagggtggctccctgtgaaagagccgaagaggaaaccccggaaaggcaaggaggaggacagaatggatgatgcccaattgatggatatgctgatgggccaaggagaggacgcccttcacatcgatgtcgacctagggtcgaaaggcacgagtcggtcacttgaagaaactcttctggagatcaccgatgagggatatggtgagcctgacctcgatgctcccgtgacccacgtcgcgcaaccttccatggccgatgttatcacgatagatgacactgggatgggaaaagtaccggtcactgtgcctatttcctctcgttccactgggagtgatgaggcactacttcctggtgagaagaagagatcccataggcaccggcatcggactgataaggaggtgatgtacactggtcgggatgttcaaggtattggtgcgaagaggcagaagaaaggtcacccgggaccagagtcgtcgccttcgcttgacctgttatccctagaagcccatcaagcagctgctgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

471

Amino Acids

52.64

Weight (kDa)

5.67

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 432, 749, 1263
AccB7I CCANNNNNTGG 1 cut(s) 973
AccI GTMKAC 2 cut(s) 224, 1020
AccII CGCG 4 cut(s) 320, 359, 569, 1127
AclWI GGATC 3 cut(s) 12, 172, 1248
AcoI YGGCCR 3 cut(s) 192, 354, 1140
AcsI RAATTY 1 cut(s) 560
AcuI CTGAAG 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 1002
AfaI GTAC 7 cut(s) 65, 104, 573, 582, 587, 1182, 1295
AfiI CCNNNNNNNGG 8 cut(s) 371, 375, 376, 469, 706, 935, 973, 997
AgeI ACCGGT 3 cut(s) 60, 746, 1183
AgsI TTSAA 3 cut(s) 460, 1055, 1313
AhdI GACNNNNNGTC 1 cut(s) 1027
AhlI ACTAGT 1 cut(s) 646
AjiI CACGTC 1 cut(s) 1123
AjnI CCWGG 2 cut(s) 35, 1237
AluBI AGCT 5 cut(s) 44, 328, 742, 761, 1406
AluI AGCT 5 cut(s) 44, 328, 742, 761, 1406
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 3 cut(s) 12, 172, 1248
AlwNI CAGNNNCTG 2 cut(s) 445, 1409
Ama87I CYCGRG 5 cut(s) 200, 257, 370, 813, 1348
AoxI GGCC 7 cut(s) 70, 174, 192, 332, 354, 988, 1140
ApeKI GCWGC 4 cut(s) 424, 739, 1403, 1406
ApoI RAATTY 1 cut(s) 560
AsiGI ACCGGT 3 cut(s) 60, 746, 1183
Asp700I GAANNNNTTC 2 cut(s) 398, 1062
AspA2I CCTAGG 1 cut(s) 1024
AspLEI GCGC 2 cut(s) 569, 1129
AspS9I GGNCC 5 cut(s) 175, 526, 769, 988, 1352
AsuHPI GGTGA 6 cut(s) 161, 1066, 1103, 1253, 1300, 1337
AvaI CYCGRG 5 cut(s) 200, 257, 370, 813, 1348
AvaII GGWCC 3 cut(s) 526, 769, 1352
AvrII CCTAGG 1 cut(s) 1024
BalI TGGCCA 1 cut(s) 194
BanI GGYRCC 3 cut(s) 432, 749, 1263
BauI CACGAG 2 cut(s) 389, 1039
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 3 cut(s) 411, 751, 1393
BccI CCATC 8 cut(s) 230, 338, 508, 698, 967, 979, 1165, 1404
BceAI ACGGC 1 cut(s) 369
BcgI CGANNNNNNTGC 2 cut(s) 1253, 1287
BciT130I CCWGG 2 cut(s) 37, 1239
BciVI GTATCC 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 344
BcuI ACTAGT 1 cut(s) 646
BfaI CTAG 7 cut(s) 630, 647, 701, 887, 893, 1025, 1388
BfmI CTRYAG 1 cut(s) 437
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 6 cut(s) 357, 425, 627, 740, 1404, 1407
BlnI CCTAGG 1 cut(s) 1024
BlsI GCNGC 6 cut(s) 358, 426, 628, 741, 1405, 1408
Bme18I GGWCC 3 cut(s) 526, 769, 1352
BmeRI GACNNNNNGTC 1 cut(s) 1027
BmeT110I CYCGRG 5 cut(s) 200, 257, 370, 813, 1348
BmgBI CACGTC 1 cut(s) 1123
BmgT120I GGNCC 5 cut(s) 175, 526, 769, 988, 1352
BmiI GGNNCC 9 cut(s) 177, 241, 434, 527, 751, 770, 902, 1265, 1353
BmrI ACTGGG 4 cut(s) 120, 479, 1176, 1224
BmsI GCATC 3 cut(s) 952, 1096, 1279
BmuI ACTGGG 4 cut(s) 120, 479, 1176, 1224
BoxI GACNNNNGTC 2 cut(s) 1121, 1357
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 1088
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 574
Bsa29I ATCGAT 2 cut(s) 7, 1014
BsaHI GRCGYC 1 cut(s) 1002
BsaWI WCCGGW 3 cut(s) 60, 746, 1183
BsaXI ACNNNNNCTCC 2 cut(s) 1277, 1307
Bsc4I CCNNNNNNNGG 8 cut(s) 371, 375, 376, 469, 706, 935, 973, 997
Bse118I RCCGGY 4 cut(s) 60, 746, 1183, 1266
Bse1I ACTGG 6 cut(s) 115, 474, 772, 1171, 1219, 1303
BseBI CCWGG 2 cut(s) 37, 1239
BseCI ATCGAT 2 cut(s) 7, 1014
BseGI GGATG 7 cut(s) 241, 349, 459, 861, 964, 1176, 1312
BseLI CCNNNNNNNGG 8 cut(s) 371, 375, 376, 469, 706, 935, 973, 997
BseMII CTCAG 4 cut(s) 290, 352, 520, 1401
BseNI ACTGG 6 cut(s) 115, 474, 772, 1171, 1219, 1303
BseRI GAGGAG 3 cut(s) 149, 859, 959
BseX3I CGGCCG 1 cut(s) 354
BseXI GCAGC 3 cut(s) 411, 751, 1393
Bsh1236I CGCG 4 cut(s) 320, 359, 569, 1127
Bsh1285I CGRYCG 2 cut(s) 61, 357
BshFI GGCC 7 cut(s) 72, 176, 194, 334, 356, 990, 1142
BshNI GGYRCC 3 cut(s) 432, 749, 1263
BshTI ACCGGT 3 cut(s) 60, 746, 1183
BshVI ATCGAT 2 cut(s) 7, 1014
BsiEI CGRYCG 2 cut(s) 61, 357
BsiHKCI CYCGRG 5 cut(s) 200, 257, 370, 813, 1348
BslFI GGGAC 4 cut(s) 539, 647, 782, 1365
BslI CCNNNNNNNGG 8 cut(s) 371, 375, 376, 469, 706, 935, 973, 997
BsmAI GTCTC 1 cut(s) 344
BsmBI CGTCTC 1 cut(s) 344
BsmFI GGGAC 4 cut(s) 539, 647, 782, 1365
BsmI GAATGC 3 cut(s) 207, 493, 547
BsnI GGCC 7 cut(s) 72, 176, 194, 334, 356, 990, 1142
BsoBI CYCGRG 5 cut(s) 200, 257, 370, 813, 1348
Bsp1407I TGTACA 1 cut(s) 1293
Bsp143I GATC 6 cut(s) 4, 79, 164, 282, 1071, 1253
Bsp19I CCATGG 1 cut(s) 1137
BspANI GGCC 7 cut(s) 72, 176, 194, 334, 356, 990, 1142
BspCNI CTCAG 4 cut(s) 291, 351, 519, 1402
BspDI ATCGAT 2 cut(s) 7, 1014
BspFNI CGCG 4 cut(s) 320, 359, 569, 1127
BspLI GGNNCC 9 cut(s) 177, 241, 434, 527, 751, 770, 902, 1265, 1353
BspPI GGATC 3 cut(s) 12, 172, 1248
BspT107I GGYRCC 3 cut(s) 432, 749, 1263
BsrFI RCCGGY 4 cut(s) 60, 746, 1183, 1266
BsrGI TGTACA 1 cut(s) 1293
BsrI ACTGG 6 cut(s) 115, 474, 772, 1171, 1219, 1303
BssAI RCCGGY 4 cut(s) 60, 746, 1183, 1266
BssMI GATC 6 cut(s) 4, 79, 164, 282, 1071, 1253
BssNAI GTATAC 1 cut(s) 225
BssNI GRCGYC 1 cut(s) 1002
BssSI CACGAG 2 cut(s) 389, 1039
BssT1I CCWWGG 4 cut(s) 406, 991, 1024, 1137
Bst1107I GTATAC 1 cut(s) 225
Bst2BI CACGAG 2 cut(s) 389, 1039
Bst2UI CCWGG 2 cut(s) 37, 1239
Bst4CI ACNGT 4 cut(s) 244, 441, 585, 1192
Bst6I CTCTTC 6 cut(s) 18, 797, 914, 1068, 1244, 1322
BstACI GRCGYC 1 cut(s) 1002
BstAUI TGTACA 1 cut(s) 1293
BstC8I GCNNGC 2 cut(s) 42, 641
BstDEI CTNAG 6 cut(s) 67, 299, 329, 338, 506, 1410
BstDSI CCRYGG 1 cut(s) 1137
BstEII GGTNACC 1 cut(s) 1343
BstF5I GGATG 7 cut(s) 241, 349, 459, 861, 964, 1176, 1312
BstFNI CGCG 4 cut(s) 320, 359, 569, 1127
BstHHI GCGC 2 cut(s) 569, 1129
BstKTI GATC 6 cut(s) 7, 82, 167, 285, 1074, 1256
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 6 cut(s) 4, 79, 164, 282, 1071, 1253
BstMCI CGRYCG 2 cut(s) 61, 357
BstMWI GCNNNNNNNGC 6 cut(s) 41, 365, 424, 758, 898, 1400
BstNI CCWGG 2 cut(s) 37, 1239
BstNSI RCATGY 2 cut(s) 295, 661
BstPAI GACNNNNGTC 2 cut(s) 1121, 1357
BstPI GGTNACC 1 cut(s) 1343
BstSFI CTRYAG 1 cut(s) 437
BstUI CGCG 4 cut(s) 320, 359, 569, 1127
BstV1I GCAGC 3 cut(s) 411, 751, 1393
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 2 cut(s) 164, 1253
BstYI RGATCY 2 cut(s) 164, 1253
BstZ17I GTATAC 1 cut(s) 225
BstZI CGGCCG 1 cut(s) 354
Bsu15I ATCGAT 2 cut(s) 7, 1014
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 7 cut(s) 72, 176, 194, 334, 356, 990, 1142
BsuTUI ATCGAT 2 cut(s) 7, 1014
BtgI CCRYGG 1 cut(s) 1137
BtrI CACGTC 1 cut(s) 1123
BtsCI GGATG 7 cut(s) 241, 349, 459, 861, 964, 1176, 1312
BtsIMutI CAGTG 5 cut(s) 467, 1164, 1188, 1212, 1296
Cac8I GCNNGC 2 cut(s) 42, 641
CaiI CAGNNNCTG 2 cut(s) 445, 1409
CfoI GCGC 2 cut(s) 569, 1129
Cfr10I RCCGGY 4 cut(s) 60, 746, 1183, 1266
Cfr13I GGNCC 5 cut(s) 175, 526, 769, 988, 1352
Cfr9I CCCGGG 4 cut(s) 257, 370, 813, 1348
ClaI ATCGAT 2 cut(s) 7, 1014
CseI GACGC 1 cut(s) 1010
Csp6I GTAC 7 cut(s) 64, 103, 572, 581, 586, 1181, 1294
CspAI ACCGGT 3 cut(s) 60, 746, 1183
CspCI CAANNNNNGTGG 2 cut(s) 524, 559
CviAII CATG 3 cut(s) 292, 658, 1138
CviQI GTAC 7 cut(s) 64, 103, 572, 581, 586, 1181, 1294
DdeI CTNAG 6 cut(s) 67, 299, 329, 338, 506, 1410
DpnI GATC 6 cut(s) 6, 81, 166, 284, 1073, 1255
DpnII GATC 6 cut(s) 4, 79, 164, 282, 1071, 1253
DriI GACNNNNNGTC 1 cut(s) 1027
EaeI YGGCCR 3 cut(s) 192, 354, 1140
EagI CGGCCG 1 cut(s) 354
Eam1104I CTCTTC 6 cut(s) 18, 797, 914, 1068, 1244, 1322
Eam1105I GACNNNNNGTC 1 cut(s) 1027
EarI CTCTTC 6 cut(s) 18, 797, 914, 1068, 1244, 1322
EclXI CGGCCG 1 cut(s) 354
Eco130I CCWWGG 4 cut(s) 406, 991, 1024, 1137
Eco147I AGGCCT 1 cut(s) 334
Eco32I GATATC 1 cut(s) 55
Eco47I GGWCC 3 cut(s) 526, 769, 1352
Eco52I CGGCCG 1 cut(s) 354
Eco57I CTGAAG 1 cut(s) 66
Eco88I CYCGRG 5 cut(s) 200, 257, 370, 813, 1348
Eco91I GGTNACC 1 cut(s) 1343
EcoO109I RGGNCCY 2 cut(s) 175, 526
EcoO65I GGTNACC 1 cut(s) 1343
EcoRI GAATTC 1 cut(s) 560
EcoRII CCWGG 2 cut(s) 35, 1237
EcoRV GATATC 1 cut(s) 55
EcoT14I CCWWGG 4 cut(s) 406, 991, 1024, 1137
ErhI CCWWGG 4 cut(s) 406, 991, 1024, 1137
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 3 cut(s) 295, 661, 1141
FalI AAGNNNNNCTT 2 cut(s) 1047, 1079
FaqI GGGAC 4 cut(s) 539, 647, 782, 1365
FatI CATG 3 cut(s) 291, 657, 1137
FauI CCCGC 1 cut(s) 601
FblI GTMKAC 2 cut(s) 224, 1020
Fnu4HI GCNGC 6 cut(s) 357, 425, 627, 740, 1404, 1407
FokI GGATG 7 cut(s) 248, 356, 466, 848, 971, 1183, 1319
Fsp4HI GCNGC 6 cut(s) 357, 425, 627, 740, 1404, 1407
FspBI CTAG 7 cut(s) 630, 647, 701, 887, 893, 1025, 1388
GlaI GCGC 2 cut(s) 568, 1128
GluI GCNGC 6 cut(s) 357, 425, 627, 740, 1404, 1407
GsuI CTGGAG 1 cut(s) 1088
HaeIII GGCC 7 cut(s) 72, 176, 194, 334, 356, 990, 1142
HgaI GACGC 1 cut(s) 1010
HhaI GCGC 2 cut(s) 569, 1129
Hin1I GRCGYC 1 cut(s) 1002
Hin1II CATG 3 cut(s) 295, 661, 1141
Hin6I GCGC 2 cut(s) 567, 1127
HinP1I GCGC 2 cut(s) 567, 1127
HincII GTYRAC 2 cut(s) 480, 1021
HindII GTYRAC 2 cut(s) 480, 1021
HinfI GANTC 7 cut(s) 26, 137, 361, 394, 858, 1042, 1358
HphI GGTGA 6 cut(s) 161, 1066, 1103, 1253, 1300, 1337
Hpy166II GTNNAC 5 cut(s) 225, 480, 574, 1021, 1296
Hpy188I TCNGA 6 cut(s) 124, 142, 213, 790, 835, 1275
Hpy188III TCNNGA 4 cut(s) 200, 1067, 1153, 1304
Hpy8I GTNNAC 5 cut(s) 225, 480, 574, 1021, 1296
Hpy99I CGWCG 3 cut(s) 254, 1127, 1366
HpyAV CCTTC 5 cut(s) 271, 763, 1016, 1143, 1377
HpyCH4III ACNGT 4 cut(s) 244, 441, 585, 1192
HpyCH4IV ACGT 1 cut(s) 1122
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 365, 424, 758, 898, 1400
HpyF3I CTNAG 6 cut(s) 67, 299, 329, 338, 506, 1410
HpySE526I ACGT 1 cut(s) 1122
Hsp92I GRCGYC 1 cut(s) 1002
Hsp92II CATG 3 cut(s) 295, 661, 1141
HspAI GCGC 2 cut(s) 567, 1127
Kzo9I GATC 6 cut(s) 4, 79, 164, 282, 1071, 1253
LmnI GCTCC 3 cut(s) 325, 906, 1114
Lsp1109I GCAGC 3 cut(s) 411, 751, 1393
LweI GCATC 3 cut(s) 952, 1096, 1279
MaeI CTAG 7 cut(s) 630, 647, 701, 887, 893, 1025, 1388
MaeII ACGT 1 cut(s) 1122
MaeIII GTNAC 8 cut(s) 184, 465, 616, 649, 1047, 1114, 1186, 1343
MalI GATC 6 cut(s) 6, 81, 166, 284, 1073, 1255
MboI GATC 6 cut(s) 4, 79, 164, 282, 1071, 1253
MfeI CAATTG 1 cut(s) 968
MflI RGATCY 2 cut(s) 164, 1253
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 3 cut(s) 83, 560, 968
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 4 cut(s) 35, 146, 1051, 1367
MmeI TCCRAC 1 cut(s) 120
Mox20I TGGCCA 1 cut(s) 194
MroXI GAANNNNTTC 2 cut(s) 398, 1062
MscI TGGCCA 1 cut(s) 194
MslI CAYNNNNRTG 3 cut(s) 290, 1014, 1169
Msp20I TGGCCA 1 cut(s) 194
MspA1I CMGCKG 3 cut(s) 424, 742, 1406
MunI CAATTG 1 cut(s) 968
Mva1269I GAATGC 3 cut(s) 207, 493, 547
MvaI CCWGG 2 cut(s) 37, 1239
MvnI CGCG 4 cut(s) 320, 359, 569, 1127
MwoI GCNNNNNNNGC 6 cut(s) 41, 365, 424, 758, 898, 1400
NcoI CCATGG 1 cut(s) 1137
NdeII GATC 6 cut(s) 4, 79, 164, 282, 1071, 1253
NlaIII CATG 3 cut(s) 295, 661, 1141
NlaIV GGNNCC 9 cut(s) 177, 241, 434, 527, 751, 770, 902, 1265, 1353
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 6 cut(s) 184, 465, 1047, 1114, 1186, 1343
NspI RCATGY 2 cut(s) 295, 661
PceI AGGCCT 1 cut(s) 334
PcsI WCGNNNNNNNCGW 3 cut(s) 104, 1037, 1110
PctI GAATGC 3 cut(s) 207, 493, 547
PdmI GAANNNNTTC 2 cut(s) 398, 1062
PfeI GAWTC 3 cut(s) 361, 394, 858
PflMI CCANNNNNTGG 1 cut(s) 973
PinAI ACCGGT 3 cut(s) 60, 746, 1183
PkrI GCNGC 6 cut(s) 358, 426, 628, 741, 1405, 1408
PleI GAGTC 4 cut(s) 34, 145, 1050, 1366
PpsI GAGTC 4 cut(s) 34, 145, 1050, 1366
PpuMI RGGWCCY 1 cut(s) 526
PshAI GACNNNNGTC 2 cut(s) 1121, 1357
Psp5II RGGWCCY 1 cut(s) 526
Psp6I CCWGG 2 cut(s) 35, 1237
PspEI GGTNACC 1 cut(s) 1343
PspGI CCWGG 2 cut(s) 35, 1237
PspN4I GGNNCC 9 cut(s) 177, 241, 434, 527, 751, 770, 902, 1265, 1353
PspPI GGNCC 5 cut(s) 175, 526, 769, 988, 1352
PspPPI RGGWCCY 1 cut(s) 526
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
PstNI CAGNNNCTG 2 cut(s) 445, 1409
PsuI RGATCY 2 cut(s) 164, 1253
PvuII CAGCTG 2 cut(s) 742, 1406
RsaI GTAC 7 cut(s) 65, 104, 573, 582, 587, 1182, 1295
RsaNI GTAC 7 cut(s) 64, 103, 572, 581, 586, 1181, 1294
RseI CAYNNNNRTG 3 cut(s) 290, 1014, 1169
SalI GTCGAC 1 cut(s) 1019
SatI GCNGC 6 cut(s) 357, 425, 627, 740, 1404, 1407
Sau3AI GATC 6 cut(s) 4, 79, 164, 282, 1071, 1253
Sau96I GGNCC 5 cut(s) 175, 526, 769, 988, 1352
SchI GAGTC 4 cut(s) 35, 146, 1051, 1367
SfaNI GCATC 3 cut(s) 952, 1096, 1279
SfcI CTRYAG 1 cut(s) 437
SinI GGWCC 3 cut(s) 526, 769, 1352
SmaI CCCGGG 4 cut(s) 259, 372, 815, 1350
SmiMI CAYNNNNRTG 3 cut(s) 290, 1014, 1169
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
SpeI ACTAGT 1 cut(s) 646
Sse9I AATT 3 cut(s) 83, 560, 968
SseBI AGGCCT 1 cut(s) 334
SspMI CTAG 7 cut(s) 630, 647, 701, 887, 893, 1025, 1388
StuI AGGCCT 1 cut(s) 334
StyI CCWWGG 4 cut(s) 406, 991, 1024, 1137
TaaI ACNGT 4 cut(s) 244, 441, 585, 1192
TaiI ACGT 1 cut(s) 1125
TaqI TCGA 9 cut(s) 7, 57, 107, 288, 668, 1014, 1020, 1031, 1104
TaqII GACCGA 1 cut(s) 1035
TasI AATT 3 cut(s) 83, 560, 968
TatI WGTACW 2 cut(s) 585, 1293
TauI GCSGC 2 cut(s) 359, 629
TfiI GAWTC 3 cut(s) 361, 394, 858
TscAI CASTG 5 cut(s) 474, 1171, 1195, 1219, 1303
TseFI GTSAC 6 cut(s) 184, 465, 1047, 1114, 1186, 1343
TseI GCWGC 4 cut(s) 424, 739, 1403, 1406
Tsp45I GTSAC 6 cut(s) 184, 465, 1047, 1114, 1186, 1343
TspDTI ATGAA 2 cut(s) 290, 850
TspMI CCCGGG 4 cut(s) 257, 370, 813, 1348
TspRI CASTG 5 cut(s) 474, 1171, 1195, 1219, 1303
Van91I CCANNNNNTGG 1 cut(s) 973
VpaK11BI GGWCC 3 cut(s) 526, 769, 1352
XapI RAATTY 1 cut(s) 560
XceI RCATGY 2 cut(s) 295, 661
XmaI CCCGGG 4 cut(s) 257, 370, 813, 1348
XmaJI CCTAGG 1 cut(s) 1024
XmiI GTMKAC 2 cut(s) 224, 1020
XmnI GAANNNNTTC 2 cut(s) 398, 1062
XspI CTAG 7 cut(s) 630, 647, 701, 887, 893, 1025, 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.