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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 313, 402 |
| AciI | CCGC | 5 cut(s) | 243, 344, 372, 417, 531 |
| AclWI | GGATC | 2 cut(s) | 227, 290 |
| AfaI | GTAC | 3 cut(s) | 37, 221, 582 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 131, 215, 305, 323, 377 |
| AgeI | ACCGGT | 3 cut(s) | 57, 316, 443 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 160 |
| AhlI | ACTAGT | 1 cut(s) | 541 |
| AjiI | CACGTC | 1 cut(s) | 280 |
| AjnI | CCWGG | 1 cut(s) | 42 |
| AluBI | AGCT | 2 cut(s) | 99, 503 |
| AluI | AGCT | 2 cut(s) | 99, 503 |
| Alw26I | GTCTC | 2 cut(s) | 444, 460 |
| AlwI | GGATC | 2 cut(s) | 227, 290 |
| Ama87I | CYCGRG | 4 cut(s) | 157, 200, 252, 299 |
| ApeKI | GCWGC | 2 cut(s) | 261, 414 |
| AsiGI | ACCGGT | 3 cut(s) | 57, 316, 443 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 392 |
| AspS9I | GGNCC | 2 cut(s) | 55, 368 |
| AsuC2I | CCSGG | 2 cut(s) | 300, 301 |
| AsuHPI | GGTGA | 2 cut(s) | 344, 392 |
| AvaI | CYCGRG | 4 cut(s) | 157, 200, 252, 299 |
| AvaII | GGWCC | 2 cut(s) | 55, 368 |
| BanI | GGYRCC | 2 cut(s) | 313, 402 |
| BbvI | GCAGC | 2 cut(s) | 273, 426 |
| BccI | CCATC | 2 cut(s) | 101, 166 |
| BceAI | ACGGC | 1 cut(s) | 230 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 250, 284, 392, 426 |
| BciT130I | CCWGG | 1 cut(s) | 44 |
| BcnI | CCSGG | 2 cut(s) | 300, 301 |
| BcoDI | GTCTC | 2 cut(s) | 444, 460 |
| BcuI | ACTAGT | 1 cut(s) | 541 |
| BfaI | CTAG | 4 cut(s) | 347, 498, 504, 542 |
| BisI | GCNGC | 3 cut(s) | 243, 262, 415 |
| BlsI | GCNGC | 3 cut(s) | 244, 263, 416 |
| Bme1390I | CCNGG | 3 cut(s) | 44, 300, 301 |
| Bme18I | GGWCC | 2 cut(s) | 55, 368 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 160 |
| BmeT110I | CYCGRG | 4 cut(s) | 157, 200, 252, 299 |
| BmgBI | CACGTC | 1 cut(s) | 280 |
| BmgT120I | GGNCC | 2 cut(s) | 55, 368 |
| BmiI | GGNNCC | 6 cut(s) | 56, 315, 342, 370, 395, 404 |
| BmrFI | CCNGG | 3 cut(s) | 44, 300, 301 |
| BmsI | GCATC | 1 cut(s) | 125 |
| BpuMI | CCSGG | 2 cut(s) | 300, 301 |
| BsaI | GGTCTC | 1 cut(s) | 460 |
| BsaJI | CCNNGG | 3 cut(s) | 125, 273, 299 |
| BsaWI | WCCGGW | 5 cut(s) | 57, 316, 337, 354, 443 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 131, 215, 305, 323, 377 |
| Bse118I | RCCGGY | 3 cut(s) | 57, 316, 443 |
| Bse3DI | GCAATG | 1 cut(s) | 288 |
| BseBI | CCWGG | 1 cut(s) | 44 |
| BseDI | CCNNGG | 3 cut(s) | 125, 273, 299 |
| BseGI | GGATG | 2 cut(s) | 140, 468 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 131, 215, 305, 323, 377 |
| BseMI | GCAATG | 1 cut(s) | 288 |
| BseRI | GAGGAG | 3 cut(s) | 203, 378, 443 |
| BseXI | GCAGC | 2 cut(s) | 273, 426 |
| BshNI | GGYRCC | 2 cut(s) | 313, 402 |
| BshTI | ACCGGT | 3 cut(s) | 57, 316, 443 |
| BsiHKCI | CYCGRG | 4 cut(s) | 157, 200, 252, 299 |
| BsiSI | CCGG | 7 cut(s) | 58, 300, 317, 324, 338, 355, 444 |
| BslFI | GGGAC | 5 cut(s) | 68, 354, 434, 508, 530 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 131, 215, 305, 323, 377 |
| BsmAI | GTCTC | 2 cut(s) | 444, 460 |
| BsmBI | CGTCTC | 1 cut(s) | 444 |
| BsmFI | GGGAC | 5 cut(s) | 68, 354, 434, 508, 530 |
| Bso31I | GGTCTC | 1 cut(s) | 460 |
| BsoBI | CYCGRG | 4 cut(s) | 157, 200, 252, 299 |
| Bsp143I | GATC | 2 cut(s) | 232, 295 |
| BspACI | CCGC | 5 cut(s) | 243, 344, 372, 417, 531 |
| BspHI | TCATGA | 1 cut(s) | 118 |
| BspLI | GGNNCC | 6 cut(s) | 56, 315, 342, 370, 395, 404 |
| BspPI | GGATC | 2 cut(s) | 227, 290 |
| BspT107I | GGYRCC | 2 cut(s) | 313, 402 |
| BspTNI | GGTCTC | 1 cut(s) | 460 |
| BsrDI | GCAATG | 1 cut(s) | 288 |
| BsrFI | RCCGGY | 3 cut(s) | 57, 316, 443 |
| BssAI | RCCGGY | 3 cut(s) | 57, 316, 443 |
| BssECI | CCNNGG | 3 cut(s) | 125, 273, 299 |
| BssMI | GATC | 2 cut(s) | 232, 295 |
| BssT1I | CCWWGG | 1 cut(s) | 125 |
| Bst2UI | CCWGG | 1 cut(s) | 44 |
| Bst4CI | ACNGT | 1 cut(s) | 407 |
| Bst6I | CTCTTC | 1 cut(s) | 383 |
| BstC8I | GCNNGC | 1 cut(s) | 140 |
| BstDEI | CTNAG | 1 cut(s) | 471 |
| BstEII | GGTNACC | 3 cut(s) | 283, 350, 433 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 213 |
| BstF5I | GGATG | 2 cut(s) | 140, 468 |
| BstKTI | GATC | 2 cut(s) | 235, 298 |
| BstMAI | GTCTC | 2 cut(s) | 444, 460 |
| BstMBI | GATC | 2 cut(s) | 232, 295 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 563 |
| BstNI | CCWGG | 1 cut(s) | 44 |
| BstNSI | RCATGY | 1 cut(s) | 116 |
| BstPI | GGTNACC | 3 cut(s) | 283, 350, 433 |
| BstSCI | CCNGG | 3 cut(s) | 42, 298, 299 |
| BstV1I | GCAGC | 2 cut(s) | 273, 426 |
| BtgZI | GCGATG | 2 cut(s) | 185, 395 |
| BtrI | CACGTC | 1 cut(s) | 280 |
| BtsCI | GGATG | 2 cut(s) | 140, 468 |
| Cac8I | GCNNGC | 1 cut(s) | 140 |
| CciI | TCATGA | 1 cut(s) | 118 |
| Cfr10I | RCCGGY | 3 cut(s) | 57, 316, 443 |
| Cfr13I | GGNCC | 2 cut(s) | 55, 368 |
| Cfr9I | CCCGGG | 1 cut(s) | 299 |
| Csp6I | GTAC | 3 cut(s) | 36, 220, 581 |
| CspAI | ACCGGT | 3 cut(s) | 57, 316, 443 |
| CviAII | CATG | 2 cut(s) | 113, 119 |
| CviJI | RGCY | 7 cut(s) | 47, 99, 124, 264, 327, 503, 557 |
| CviKI_1 | RGCY | 7 cut(s) | 47, 99, 124, 264, 327, 503, 557 |
| CviQI | GTAC | 3 cut(s) | 36, 220, 581 |
| DdeI | CTNAG | 1 cut(s) | 471 |
| DpnI | GATC | 2 cut(s) | 234, 297 |
| DpnII | GATC | 2 cut(s) | 232, 295 |
| DriI | GACNNNNNGTC | 1 cut(s) | 160 |
| Eam1104I | CTCTTC | 1 cut(s) | 383 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 160 |
| EarI | CTCTTC | 1 cut(s) | 383 |
| EciI | GGCGGA | 1 cut(s) | 520 |
| Eco130I | CCWWGG | 1 cut(s) | 125 |
| Eco31I | GGTCTC | 1 cut(s) | 460 |
| Eco47I | GGWCC | 2 cut(s) | 55, 368 |
| Eco88I | CYCGRG | 4 cut(s) | 157, 200, 252, 299 |
| Eco91I | GGTNACC | 3 cut(s) | 283, 350, 433 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 213 |
| EcoO109I | RGGNCCY | 1 cut(s) | 368 |
| EcoO65I | GGTNACC | 3 cut(s) | 283, 350, 433 |
| EcoRII | CCWGG | 1 cut(s) | 42 |
| EcoT14I | CCWWGG | 1 cut(s) | 125 |
| ErhI | CCWWGG | 1 cut(s) | 125 |
| Esp3I | CGTCTC | 1 cut(s) | 444 |
| FaeI | CATG | 2 cut(s) | 116, 122 |
| FaiI | YATR | 7 cut(s) | 114, 120, 399, 441, 522, 536, 561 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 11, 43 |
| FaqI | GGGAC | 5 cut(s) | 68, 354, 434, 508, 530 |
| FatI | CATG | 2 cut(s) | 112, 118 |
| FauI | CCCGC | 2 cut(s) | 379, 410 |
| Fnu4HI | GCNGC | 3 cut(s) | 243, 262, 415 |
| FokI | GGATG | 2 cut(s) | 147, 475 |
| Fsp4HI | GCNGC | 3 cut(s) | 243, 262, 415 |
| FspBI | CTAG | 4 cut(s) | 347, 498, 504, 542 |
| GluI | GCNGC | 3 cut(s) | 243, 262, 415 |
| HapII | CCGG | 7 cut(s) | 58, 300, 317, 324, 338, 355, 444 |
| Hin1II | CATG | 2 cut(s) | 116, 122 |
| HincII | GTYRAC | 1 cut(s) | 154 |
| HindII | GTYRAC | 1 cut(s) | 154 |
| HinfI | GANTC | 2 cut(s) | 155, 205 |
| HpaII | CCGG | 7 cut(s) | 58, 300, 317, 324, 338, 355, 444 |
| HphI | GGTGA | 2 cut(s) | 344, 392 |
| Hpy166II | GTNNAC | 1 cut(s) | 154 |
| Hpy188III | TCNNGA | 5 cut(s) | 83, 119, 200, 202, 493 |
| Hpy8I | GTNNAC | 1 cut(s) | 154 |
| HpyAV | CCTTC | 2 cut(s) | 160, 209 |
| HpyCH4III | ACNGT | 1 cut(s) | 407 |
| HpyCH4IV | ACGT | 3 cut(s) | 38, 279, 453 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 563 |
| HpyF3I | CTNAG | 1 cut(s) | 471 |
| HpySE526I | ACGT | 3 cut(s) | 38, 279, 453 |
| Hsp92II | CATG | 2 cut(s) | 116, 122 |
| Kzo9I | GATC | 2 cut(s) | 232, 295 |
| LpnPI | CCDG | 9 cut(s) | 29, 56, 71, 313, 330, 337, 351, 368, 457 |
| Lsp1109I | GCAGC | 2 cut(s) | 273, 426 |
| LweI | GCATC | 1 cut(s) | 125 |
| MaeI | CTAG | 4 cut(s) | 347, 498, 504, 542 |
| MaeII | ACGT | 3 cut(s) | 38, 279, 453 |
| MaeIII | GTNAC | 5 cut(s) | 247, 283, 350, 433, 454 |
| MalI | GATC | 2 cut(s) | 234, 297 |
| MboI | GATC | 2 cut(s) | 232, 295 |
| MboII | GAAGA | 5 cut(s) | 188, 326, 397, 400, 492 |
| MfeI | CAATTG | 1 cut(s) | 567 |
| MluCI | AATT | 1 cut(s) | 567 |
| MlyI | GAGTC | 1 cut(s) | 149 |
| MroXI | GAANNNNTTC | 1 cut(s) | 392 |
| MseI | TTAA | 2 cut(s) | 9, 29 |
| MslI | CAYNNNNRTG | 2 cut(s) | 117, 147 |
| MspA1I | CMGCKG | 1 cut(s) | 417 |
| MspI | CCGG | 7 cut(s) | 58, 300, 317, 324, 338, 355, 444 |
| MspR9I | CCNGG | 3 cut(s) | 44, 300, 301 |
| MunI | CAATTG | 1 cut(s) | 567 |
| MvaI | CCWGG | 1 cut(s) | 44 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 563 |
| NciI | CCSGG | 2 cut(s) | 300, 301 |
| NdeII | GATC | 2 cut(s) | 232, 295 |
| NlaIII | CATG | 2 cut(s) | 116, 122 |
| NlaIV | GGNNCC | 6 cut(s) | 56, 315, 342, 370, 395, 404 |
| NmeAIII | GCCGAG | 1 cut(s) | 298 |
| NmuCI | GTSAC | 1 cut(s) | 350 |
| NspI | RCATGY | 1 cut(s) | 116 |
| PaeR7I | CTCGAG | 2 cut(s) | 200, 252 |
| PagI | TCATGA | 1 cut(s) | 118 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 228, 276, 589 |
| PdmI | GAANNNNTTC | 1 cut(s) | 392 |
| PfeI | GAWTC | 1 cut(s) | 205 |
| PinAI | ACCGGT | 3 cut(s) | 57, 316, 443 |
| PkrI | GCNGC | 3 cut(s) | 244, 263, 416 |
| PleI | GAGTC | 1 cut(s) | 149 |
| PpsI | GAGTC | 1 cut(s) | 149 |
| PpuMI | RGGWCCY | 1 cut(s) | 368 |
| Psp5II | RGGWCCY | 1 cut(s) | 368 |
| Psp6I | CCWGG | 1 cut(s) | 42 |
| PspEI | GGTNACC | 3 cut(s) | 283, 350, 433 |
| PspGI | CCWGG | 1 cut(s) | 42 |
| PspN4I | GGNNCC | 6 cut(s) | 56, 315, 342, 370, 395, 404 |
| PspPI | GGNCC | 2 cut(s) | 55, 368 |
| PspPPI | RGGWCCY | 1 cut(s) | 368 |
| PspXI | VCTCGAGB | 1 cut(s) | 252 |
| RsaI | GTAC | 3 cut(s) | 37, 221, 582 |
| RsaNI | GTAC | 3 cut(s) | 36, 220, 581 |
| RseI | CAYNNNNRTG | 2 cut(s) | 117, 147 |
| SaqAI | TTAA | 2 cut(s) | 9, 29 |
| SatI | GCNGC | 3 cut(s) | 243, 262, 415 |
| Sau3AI | GATC | 2 cut(s) | 232, 295 |
| Sau96I | GGNCC | 2 cut(s) | 55, 368 |
| SchI | GAGTC | 1 cut(s) | 149 |
| ScrFI | CCNGG | 3 cut(s) | 44, 300, 301 |
| SfaNI | GCATC | 1 cut(s) | 125 |
| Sfr274I | CTCGAG | 2 cut(s) | 200, 252 |
| SgrAI | CRCCGGYG | 1 cut(s) | 316 |
| SinI | GGWCC | 2 cut(s) | 55, 368 |
| SlaI | CTCGAG | 2 cut(s) | 200, 252 |
| SmaI | CCCGGG | 1 cut(s) | 301 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 117, 147 |
| SmlI | CTYRAG | 2 cut(s) | 200, 252 |
| SmoI | CTYRAG | 2 cut(s) | 200, 252 |
| SpeI | ACTAGT | 1 cut(s) | 541 |
| Sse9I | AATT | 1 cut(s) | 567 |
| SsiI | CCGC | 5 cut(s) | 243, 344, 372, 417, 531 |
| SspMI | CTAG | 4 cut(s) | 347, 498, 504, 542 |
| StyD4I | CCNGG | 3 cut(s) | 42, 298, 299 |
| StyI | CCWWGG | 1 cut(s) | 125 |
| TaaI | ACNGT | 1 cut(s) | 407 |
| TaiI | ACGT | 3 cut(s) | 41, 282, 456 |
| TaqI | TCGA | 5 cut(s) | 82, 164, 186, 201, 253 |
| TasI | AATT | 1 cut(s) | 567 |
| TauI | GCSGC | 1 cut(s) | 245 |
| TfiI | GAWTC | 1 cut(s) | 205 |
| Tru1I | TTAA | 2 cut(s) | 9, 29 |
| Tru9I | TTAA | 2 cut(s) | 9, 29 |
| TseFI | GTSAC | 1 cut(s) | 350 |
| TseI | GCWGC | 2 cut(s) | 261, 414 |
| Tsp45I | GTSAC | 1 cut(s) | 350 |
| TspDTI | ATGAA | 1 cut(s) | 228 |
| TspGWI | ACGGA | 2 cut(s) | 107, 237 |
| TspMI | CCCGGG | 1 cut(s) | 299 |
| VpaK11BI | GGWCC | 2 cut(s) | 55, 368 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 213 |
| XceI | RCATGY | 1 cut(s) | 116 |
| XhoI | CTCGAG | 2 cut(s) | 200, 252 |
| XmaI | CCCGGG | 1 cut(s) | 299 |
| XmnI | GAANNNNTTC | 1 cut(s) | 392 |
| XspI | CTAG | 4 cut(s) | 347, 498, 504, 542 |