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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 356 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 126 |
| AccBSI | CCGCTC | 1 cut(s) | 379 |
| AciI | CCGC | 7 cut(s) | 20, 149, 182, 188, 276, 304, 377 |
| AclWI | GGATC | 2 cut(s) | 360, 373 |
| AcyI | GRCGYC | 1 cut(s) | 357 |
| AfaI | GTAC | 3 cut(s) | 59, 281, 448 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 126, 166, 171 |
| AgsI | TTSAA | 1 cut(s) | 260 |
| AluBI | AGCT | 5 cut(s) | 13, 107, 211, 412, 434 |
| AluI | AGCT | 5 cut(s) | 13, 107, 211, 412, 434 |
| Alw21I | GWGCWC | 2 cut(s) | 159, 213 |
| Alw26I | GTCTC | 2 cut(s) | 446, 502 |
| AlwI | GGATC | 2 cut(s) | 360, 373 |
| Ama87I | CYCGRG | 3 cut(s) | 87, 369, 429 |
| ApeKI | GCWGC | 6 cut(s) | 107, 225, 273, 341, 344, 457 |
| AspLEI | GCGC | 2 cut(s) | 225, 359 |
| AsuC2I | CCSGG | 2 cut(s) | 88, 89 |
| AsuHPI | GGTGA | 1 cut(s) | 88 |
| AvaI | CYCGRG | 3 cut(s) | 87, 369, 429 |
| BaeGI | GKGCMC | 1 cut(s) | 88 |
| BamHI | GGATCC | 1 cut(s) | 365 |
| BanI | GGYRCC | 1 cut(s) | 356 |
| BanII | GRGCYC | 1 cut(s) | 213 |
| Bbv12I | GWGCWC | 2 cut(s) | 159, 213 |
| BbvI | GCAGC | 6 cut(s) | 94, 212, 285, 328, 356, 444 |
| BccI | CCATC | 1 cut(s) | 497 |
| BcnI | CCSGG | 2 cut(s) | 88, 89 |
| BcoDI | GTCTC | 2 cut(s) | 446, 502 |
| BfaI | CTAG | 1 cut(s) | 413 |
| BfmI | CTRYAG | 1 cut(s) | 342 |
| BfoI | RGCGCY | 1 cut(s) | 360 |
| BisI | GCNGC | 8 cut(s) | 21, 108, 226, 274, 342, 345, 377, 458 |
| BlsI | GCNGC | 8 cut(s) | 22, 109, 227, 275, 343, 346, 378, 459 |
| Bme1390I | CCNGG | 2 cut(s) | 88, 89 |
| BmeT110I | CYCGRG | 3 cut(s) | 87, 369, 429 |
| BmiI | GGNNCC | 4 cut(s) | 42, 202, 358, 367 |
| BmrFI | CCNGG | 2 cut(s) | 88, 89 |
| BmsI | GCATC | 1 cut(s) | 412 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 363, 395 |
| BpuEI | CTTGAG | 1 cut(s) | 335 |
| BpuMI | CCSGG | 2 cut(s) | 88, 89 |
| BsaHI | GRCGYC | 1 cut(s) | 357 |
| BsaJI | CCNNGG | 3 cut(s) | 87, 165, 467 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 126, 166, 171 |
| Bse118I | RCCGGY | 1 cut(s) | 359 |
| Bse1I | ACTGG | 1 cut(s) | 287 |
| BseDI | CCNNGG | 3 cut(s) | 87, 165, 467 |
| BseGI | GGATG | 3 cut(s) | 76, 291, 489 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 126, 166, 171 |
| BseNI | ACTGG | 1 cut(s) | 287 |
| BseRI | GAGGAG | 2 cut(s) | 167, 417 |
| BseSI | GKGCMC | 1 cut(s) | 88 |
| BseXI | GCAGC | 6 cut(s) | 94, 212, 285, 328, 356, 444 |
| BshNI | GGYRCC | 1 cut(s) | 356 |
| BsiHKAI | GWGCWC | 2 cut(s) | 159, 213 |
| BsiHKCI | CYCGRG | 3 cut(s) | 87, 369, 429 |
| BsiSI | CCGG | 3 cut(s) | 44, 88, 360 |
| BslFI | GGGAC | 2 cut(s) | 104, 321 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 126, 166, 171 |
| BsmAI | GTCTC | 2 cut(s) | 446, 502 |
| BsmBI | CGTCTC | 1 cut(s) | 446 |
| BsmFI | GGGAC | 2 cut(s) | 104, 321 |
| BsoBI | CYCGRG | 3 cut(s) | 87, 369, 429 |
| Bsp1286I | GDGCHC | 3 cut(s) | 88, 159, 213 |
| Bsp143I | GATC | 1 cut(s) | 365 |
| Bsp19I | CCATGG | 1 cut(s) | 467 |
| BspACI | CCGC | 7 cut(s) | 20, 149, 182, 188, 276, 304, 377 |
| BspLI | GGNNCC | 4 cut(s) | 42, 202, 358, 367 |
| BspMAI | CTGCAG | 1 cut(s) | 346 |
| BspPI | GGATC | 2 cut(s) | 360, 373 |
| BspT107I | GGYRCC | 1 cut(s) | 356 |
| BsrBI | CCGCTC | 1 cut(s) | 379 |
| BsrFI | RCCGGY | 1 cut(s) | 359 |
| BsrI | ACTGG | 1 cut(s) | 287 |
| BssAI | RCCGGY | 1 cut(s) | 359 |
| BssECI | CCNNGG | 3 cut(s) | 87, 165, 467 |
| BssMI | GATC | 1 cut(s) | 365 |
| BssNI | GRCGYC | 1 cut(s) | 357 |
| BssT1I | CCWWGG | 1 cut(s) | 467 |
| Bst6I | CTCTTC | 1 cut(s) | 74 |
| BstACI | GRCGYC | 1 cut(s) | 357 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 146 |
| BstDSI | CCRYGG | 2 cut(s) | 165, 467 |
| BstF5I | GGATG | 3 cut(s) | 76, 291, 489 |
| BstH2I | RGCGCY | 1 cut(s) | 360 |
| BstHHI | GCGC | 2 cut(s) | 225, 359 |
| BstKTI | GATC | 1 cut(s) | 368 |
| BstMAI | GTCTC | 2 cut(s) | 446, 502 |
| BstMBI | GATC | 1 cut(s) | 365 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 146, 431 |
| BstSCI | CCNGG | 2 cut(s) | 86, 87 |
| BstSFI | CTRYAG | 1 cut(s) | 342 |
| BstSLI | GKGCMC | 1 cut(s) | 88 |
| BstV1I | GCAGC | 6 cut(s) | 94, 212, 285, 328, 356, 444 |
| BstX2I | RGATCY | 1 cut(s) | 365 |
| BstYI | RGATCY | 1 cut(s) | 365 |
| BtgI | CCRYGG | 2 cut(s) | 165, 467 |
| BtsCI | GGATG | 3 cut(s) | 76, 291, 489 |
| CfoI | GCGC | 2 cut(s) | 225, 359 |
| Cfr10I | RCCGGY | 1 cut(s) | 359 |
| Cfr9I | CCCGGG | 1 cut(s) | 87 |
| CseI | GACGC | 1 cut(s) | 463 |
| Csp6I | GTAC | 3 cut(s) | 58, 280, 447 |
| CviAII | CATG | 3 cut(s) | 146, 468, 494 |
| CviQI | GTAC | 3 cut(s) | 58, 280, 447 |
| DinI | GGCGCC | 1 cut(s) | 358 |
| DpnI | GATC | 1 cut(s) | 367 |
| DpnII | GATC | 1 cut(s) | 365 |
| Eam1104I | CTCTTC | 1 cut(s) | 74 |
| EarI | CTCTTC | 1 cut(s) | 74 |
| EciI | GGCGGA | 1 cut(s) | 203 |
| Ecl136II | GAGCTC | 1 cut(s) | 211 |
| Eco130I | CCWWGG | 1 cut(s) | 467 |
| Eco24I | GRGCYC | 1 cut(s) | 213 |
| Eco53kI | GAGCTC | 1 cut(s) | 211 |
| Eco88I | CYCGRG | 3 cut(s) | 87, 369, 429 |
| EcoICRI | GAGCTC | 1 cut(s) | 211 |
| EcoT14I | CCWWGG | 1 cut(s) | 467 |
| EcoT38I | GRGCYC | 1 cut(s) | 213 |
| EgeI | GGCGCC | 1 cut(s) | 358 |
| EheI | GGCGCC | 1 cut(s) | 358 |
| ErhI | CCWWGG | 1 cut(s) | 467 |
| Esp3I | CGTCTC | 1 cut(s) | 446 |
| FaeI | CATG | 3 cut(s) | 149, 471, 497 |
| FaiI | YATR | 8 cut(s) | 142, 147, 195, 221, 252, 395, 469, 495 |
| FaqI | GGGAC | 2 cut(s) | 104, 321 |
| FatI | CATG | 3 cut(s) | 145, 467, 493 |
| FauI | CCCGC | 2 cut(s) | 269, 297 |
| Fnu4HI | GCNGC | 8 cut(s) | 21, 108, 226, 274, 342, 345, 377, 458 |
| FokI | GGATG | 3 cut(s) | 83, 298, 476 |
| FriOI | GRGCYC | 1 cut(s) | 213 |
| Fsp4HI | GCNGC | 8 cut(s) | 21, 108, 226, 274, 342, 345, 377, 458 |
| FspBI | CTAG | 1 cut(s) | 413 |
| GlaI | GCGC | 2 cut(s) | 224, 358 |
| GluI | GCNGC | 8 cut(s) | 21, 108, 226, 274, 342, 345, 377, 458 |
| HaeII | RGCGCY | 1 cut(s) | 360 |
| HapII | CCGG | 3 cut(s) | 44, 88, 360 |
| HgaI | GACGC | 1 cut(s) | 463 |
| HhaI | GCGC | 2 cut(s) | 225, 359 |
| Hin1I | GRCGYC | 1 cut(s) | 357 |
| Hin1II | CATG | 3 cut(s) | 149, 471, 497 |
| Hin6I | GCGC | 2 cut(s) | 223, 357 |
| HinP1I | GCGC | 2 cut(s) | 223, 357 |
| HinfI | GANTC | 3 cut(s) | 33, 309, 485 |
| HpaII | CCGG | 3 cut(s) | 44, 88, 360 |
| HphI | GGTGA | 1 cut(s) | 88 |
| Hpy188III | TCNNGA | 3 cut(s) | 369, 477, 499 |
| HpyAV | CCTTC | 3 cut(s) | 41, 170, 322 |
| HpyCH4V | TGCA | 1 cut(s) | 344 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 146, 431 |
| Hsp92I | GRCGYC | 1 cut(s) | 357 |
| Hsp92II | CATG | 3 cut(s) | 149, 471, 497 |
| HspAI | GCGC | 2 cut(s) | 223, 357 |
| KasI | GGCGCC | 1 cut(s) | 356 |
| Kzo9I | GATC | 1 cut(s) | 365 |
| LmnI | GCTCC | 5 cut(s) | 10, 40, 154, 206, 430 |
| LpnPI | CCDG | 4 cut(s) | 57, 101, 268, 373 |
| Lsp1109I | GCAGC | 6 cut(s) | 94, 212, 285, 328, 356, 444 |
| LweI | GCATC | 1 cut(s) | 412 |
| MaeI | CTAG | 1 cut(s) | 413 |
| MaeIII | GTNAC | 2 cut(s) | 4, 383 |
| MalI | GATC | 1 cut(s) | 367 |
| MbiI | CCGCTC | 1 cut(s) | 379 |
| MboI | GATC | 1 cut(s) | 365 |
| MboII | GAAGA | 2 cut(s) | 91, 331 |
| MflI | RGATCY | 1 cut(s) | 365 |
| MhlI | GDGCHC | 3 cut(s) | 88, 159, 213 |
| MluCI | AATT | 1 cut(s) | 350 |
| Mly113I | GGCGCC | 1 cut(s) | 357 |
| MlyI | GAGTC | 2 cut(s) | 303, 479 |
| MnlI | CCTC | 9 cut(s) | 55, 60, 67, 123, 129, 145, 294, 331, 438 |
| MslI | CAYNNNNRTG | 1 cut(s) | 218 |
| MspA1I | CMGCKG | 1 cut(s) | 276 |
| MspI | CCGG | 3 cut(s) | 44, 88, 360 |
| MspR9I | CCNGG | 2 cut(s) | 88, 89 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 146, 431 |
| NarI | GGCGCC | 1 cut(s) | 357 |
| NciI | CCSGG | 2 cut(s) | 88, 89 |
| NcoI | CCATGG | 1 cut(s) | 467 |
| NdeII | GATC | 1 cut(s) | 365 |
| NlaIII | CATG | 3 cut(s) | 149, 471, 497 |
| NlaIV | GGNNCC | 4 cut(s) | 42, 202, 358, 367 |
| NmeAIII | GCCGAG | 1 cut(s) | 254 |
| PaeR7I | CTCGAG | 1 cut(s) | 429 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 131 |
| PfeI | GAWTC | 1 cut(s) | 33 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 126 |
| PkrI | GCNGC | 8 cut(s) | 22, 109, 227, 275, 343, 346, 378, 459 |
| PleI | GAGTC | 2 cut(s) | 303, 479 |
| PluTI | GGCGCC | 1 cut(s) | 360 |
| PpsI | GAGTC | 2 cut(s) | 303, 479 |
| Psp124BI | GAGCTC | 1 cut(s) | 213 |
| PspN4I | GGNNCC | 4 cut(s) | 42, 202, 358, 367 |
| PspXI | VCTCGAGB | 1 cut(s) | 429 |
| PstI | CTGCAG | 1 cut(s) | 346 |
| PsuI | RGATCY | 1 cut(s) | 365 |
| RsaI | GTAC | 3 cut(s) | 59, 281, 448 |
| RsaNI | GTAC | 3 cut(s) | 58, 280, 447 |
| RseI | CAYNNNNRTG | 1 cut(s) | 218 |
| SacI | GAGCTC | 1 cut(s) | 213 |
| SatI | GCNGC | 8 cut(s) | 21, 108, 226, 274, 342, 345, 377, 458 |
| Sau3AI | GATC | 1 cut(s) | 365 |
| SchI | GAGTC | 2 cut(s) | 303, 479 |
| ScrFI | CCNGG | 2 cut(s) | 88, 89 |
| SduI | GDGCHC | 3 cut(s) | 88, 159, 213 |
| SetI | ASST | 7 cut(s) | 15, 78, 109, 162, 213, 414, 436 |
| SfaNI | GCATC | 1 cut(s) | 412 |
| SfcI | CTRYAG | 1 cut(s) | 342 |
| SfoI | GGCGCC | 1 cut(s) | 358 |
| Sfr274I | CTCGAG | 1 cut(s) | 429 |
| SgrAI | CRCCGGYG | 1 cut(s) | 359 |
| SlaI | CTCGAG | 1 cut(s) | 429 |
| SmaI | CCCGGG | 1 cut(s) | 89 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 218 |
| SmlI | CTYRAG | 2 cut(s) | 314, 429 |
| SmoI | CTYRAG | 2 cut(s) | 314, 429 |
| Sse9I | AATT | 1 cut(s) | 350 |
| SsiI | CCGC | 7 cut(s) | 20, 149, 182, 188, 276, 304, 377 |
| SspDI | GGCGCC | 1 cut(s) | 356 |
| SspMI | CTAG | 1 cut(s) | 413 |
| SstI | GAGCTC | 1 cut(s) | 213 |
| StyD4I | CCNGG | 2 cut(s) | 86, 87 |
| StyI | CCWWGG | 1 cut(s) | 467 |
| TaqI | TCGA | 3 cut(s) | 299, 430, 500 |
| TasI | AATT | 1 cut(s) | 350 |
| TauI | GCSGC | 2 cut(s) | 23, 379 |
| TfiI | GAWTC | 1 cut(s) | 33 |
| TseI | GCWGC | 6 cut(s) | 107, 225, 273, 341, 344, 457 |
| TspDTI | ATGAA | 2 cut(s) | 267, 302 |
| TspGWI | ACGGA | 2 cut(s) | 23, 464 |
| TspMI | CCCGGG | 1 cut(s) | 87 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 126 |
| XhoI | CTCGAG | 1 cut(s) | 429 |
| XmaI | CCCGGG | 1 cut(s) | 87 |
| XspI | CTAG | 1 cut(s) | 413 |