Rmu_sc0002545.1_g000060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002545.1
OG0000087
Physical Location & Seq
Reverse (-)
275380 .. 278693
3314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002545.1_g000060.1.cds

Sequence Viewer

Length: 2457 bp
ctggtaccggatggggtggagaaaggacctagctctgatacccgatggggtagaaaatttgagcctccggtacccaatggggtagagagaggacttggttctgatacccgatggggtagaaaatttgagcctccggtacccaatggggtagacagaggacttggctctgatacccgatggggtagaaaatttgagcctccggtacccaatggggtagagagaggacttggttctgatacccgatggggtagaaaattagagcctccggtacccaatggggtagatagaggacttggctctgatacccgatggggtagaaaattagagcctccggtacccaatggggtagagagaggacttggctctgatacccgatggggtaggcggtgcatgtcggccacgtggagcagactgggttgtgcaataaatgcccgtcttttcgcctgccaaagcttcgagaaatggggggaggcgtgggacacgtgtagcgatcctatgattgagggcttttcggtttcgacggccctgatgcattggagattgaatttaagagggaaaccgactgttttccctcactttcgtgaaaaaaaactcagaagacttggaagatttgcagcgaggagaaagggagagccaaagagtgtgcgtacttgtggagtgatagatcgatcatctgccgaagaagagatagcgagatctgaggtccccggtaccgtagttaggatggaatcagaagccaggggggatacgggatcgttgtaccagtcttctgccaagcaagctgaagtggatatcgatcggtacttaggccgagtagatcaattagcagagaacacgggatcctcgactggggtgttctcggagagcagtgaggagtccgacgagggtgagagcgagggtggatctgcggaggccccggtagtcacggtggccattaccgagggcataccgaagcagaggtatacacttgcggatgggaccgtatgcgacgaacccaggagaagtatgacgatgaaggagataatcgacatgcgactgaagtggggaatactagacgcggtggagcttaggcctctcagggatggagagatggccgcgaatcctgccccggggtgggtggcgctgcacgagaatcagctccaccaagggttatcgctaccgctgccccgatgtctacagtatctgctacggatgctaaacctgtcacctgggcagctgaccccgaacgccattcgtcaaatatacagtatgatagccatgtgggacttgtgccaacaagggtggccctccataaatgaatttcgcgcgtcctatactctatccgaagtagaaaggaagaggatagcccggggggaagacgcccttcacatcgatgtcgacctagggtcgaaaggcacaagtcggtcagttgaagaaacccttttggagatcaccgatgagggatatggcgaacctgatcccgatgctcccgtgacccacgttgtgcagccttctgtggccgacgttatcacgatagatgacaccgggacgggaaaggtaccggcccccgtgcctatttcctctcgttccactgggagctacgaggcattgctgcccggtgagaagaaaagatctcataggcaccggcgtcgaagtgataaggaggtgatgtacattggccgggttgttcagggtttcggtgcgaagaggcagaagaaagatcacccaggaccagagtcgtcgccatcgcttggcttgttgtctcctgtcattctggtaatccccaagaagcccatcaggcagctgttaagtgagtacggggttggcgatgaaaagttcgtgtggtccatgcttggtgacctgaaggatattgaccttgaccgggttcgggtcaaggacaatacgccccaagagaatcgccgtattgcccgggagtccatgatgcaggcactcttcaatgtgtacgctactgacgccagtgaggaagatacccatctgaaggaggaggttagtaatctctccgggcaggtgaagtttcttcatggcgagaaggccaagctggagaaggagcgggactcattgaaggctgagatggccgccgccaggcagcggatagtggagctggagggtgaagtcactgaagcgcgggaagaggtgaagaacgctcgggacttcgagaaaaaagctgcagagtctgccgtgtcatggaaggagaaggcagaccacctggaggatcgccttcccgcggagaggcacgaggcagtggaggagtacaagtcctccgaagagctcatcgctatgctcactgctgcccaagataaggctgtcatcatgaagttcaaggagtgggtggcggccgggtatttagatgaagctaaattcaggcggggtctcctcgaaaaaaagaagaaagatcgggaggcggcgatcaaatctagtgccggtgggtcccagagtaccggtggcgagtggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

818

Amino Acids

91.02

Weight (kDa)

6.25

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1996
Acc36I ACCTGC 1 cut(s) 1996
Acc65I GGTACC 8 cut(s) 4, 70, 136, 202, 268, 334, 710, 1537
AccB1I GGYRCC 9 cut(s) 4, 70, 136, 202, 268, 334, 710, 1537, 1620
AccB7I CCANNNNNTGG 1 cut(s) 1730
AccBSI CCGCTC 1 cut(s) 2050
AccI GTMKAC 4 cut(s) 150, 962, 1174, 1377
AccII CGCG 6 cut(s) 1058, 1097, 1305, 1307, 2125, 2225
AclWI GGATC 7 cut(s) 485, 760, 834, 847, 910, 1451, 2220
AcoI YGGCCR 7 cut(s) 396, 930, 1092, 1497, 1657, 2073, 2334
AcsI RAATTY 6 cut(s) 56, 122, 188, 544, 1298, 2357
AcuI CTGAAG 5 cut(s) 804, 1058, 1862, 1997, 2139
AcvI CACGTG 2 cut(s) 402, 483
AcyI GRCGYC 3 cut(s) 1359, 1627, 1953
AdeI CACNNNGTG 1 cut(s) 1483
AflIII ACRYGT 2 cut(s) 480, 482
AgeI ACCGGT 1 cut(s) 2438
AgsI TTSAA 5 cut(s) 544, 1412, 1936, 2062, 2320
AhdI GACNNNNNGTC 1 cut(s) 1384
AjnI CCWGG 6 cut(s) 737, 995, 1207, 1705, 2081, 2205
AleI CACNNNNGTG 1 cut(s) 579
AloI GAACNNNNNNTCC 2 cut(s) 824, 856
Alw21I GWGCWC 1 cut(s) 2271
Alw26I GTCTC 2 cut(s) 1746, 2375
AlwI GGATC 7 cut(s) 485, 760, 834, 847, 910, 1451, 2220
AlwNI CAGNNNCTG 2 cut(s) 1183, 2174
Ama87I CYCGRG 4 cut(s) 1108, 1347, 1908, 2145
ApoI RAATTY 6 cut(s) 56, 122, 188, 544, 1298, 2357
AsiGI ACCGGT 1 cut(s) 2438
Asp718I GGTACC 8 cut(s) 4, 70, 136, 202, 268, 334, 710, 1537
AspA2I CCTAGG 1 cut(s) 1381
AspLEI GCGC 3 cut(s) 1123, 1307, 2125
AvaI CYCGRG 4 cut(s) 1108, 1347, 1908, 2145
AvaII GGWCC 6 cut(s) 26, 703, 978, 1709, 1824, 2427
AvrII CCTAGG 1 cut(s) 1381
BaeI ACNNNNGTAYC 2 cut(s) 702, 735
BalI TGGCCA 1 cut(s) 932
BamHI GGATCC 1 cut(s) 839
BanI GGYRCC 9 cut(s) 4, 70, 136, 202, 268, 334, 710, 1537, 1620
BanII GRGCYC 1 cut(s) 2271
BauI CACGAG 2 cut(s) 1127, 2234
BbrPI CACGTG 2 cut(s) 402, 483
BbsI GAAGAC 3 cut(s) 604, 759, 1362
Bbv12I GWGCWC 1 cut(s) 2271
BceAI ACGGC 3 cut(s) 537, 1884, 2162
BcgI CGANNNNNNTGC 2 cut(s) 1610, 1644
BciT130I CCWGG 6 cut(s) 739, 997, 1209, 1707, 2083, 2207
BciVI GTATCC 1 cut(s) 739
BcoDI GTCTC 2 cut(s) 1746, 2375
BfaI CTAG 4 cut(s) 30, 1052, 1382, 2415
BfmI CTRYAG 2 cut(s) 1175, 2166
BfoI RGCGCY 1 cut(s) 1124
BfuAI ACCTGC 1 cut(s) 1996
BfuI GTATCC 1 cut(s) 739
BglI GCCNNNNNGGC 1 cut(s) 1777
BglII AGATCT 2 cut(s) 695, 1610
BlnI CCTAGG 1 cut(s) 1381
Bme18I GGWCC 6 cut(s) 26, 703, 978, 1709, 1824, 2427
BmeRI GACNNNNNGTC 1 cut(s) 1384
BmeT110I CYCGRG 4 cut(s) 1108, 1347, 1908, 2145
BmrI ACTGGG 3 cut(s) 422, 858, 1581
BmsI GCATC 4 cut(s) 519, 1182, 1453, 1911
BmuI ACTGGG 3 cut(s) 422, 858, 1581
BoxI GACNNNNGTC 1 cut(s) 1714
BpiI GAAGAC 3 cut(s) 604, 759, 1362
BplI GAGNNNNNCTC 2 cut(s) 2039, 2071
BpmI CTGGAG 3 cut(s) 2060, 2123, 2228
Bpu10I CCTNAGC 1 cut(s) 1067
Bsa29I ATCGAT 3 cut(s) 667, 795, 1371
BsaAI YACGTR 2 cut(s) 402, 483
BsaBI GATNNNNATC 2 cut(s) 795, 1971
BsaHI GRCGYC 3 cut(s) 1359, 1627, 1953
BsaI GGTCTC 1 cut(s) 2375
BsaWI WCCGGW 7 cut(s) 7, 67, 133, 199, 265, 331, 2438
BsaXI ACNNNNNCTCC 6 cut(s) 1634, 1664, 2240, 2243, 2270, 2273
Bse118I RCCGGY 4 cut(s) 1540, 1623, 2420, 2438
Bse1I ACTGG 5 cut(s) 417, 763, 853, 1576, 1956
Bse3DI GCAATG 1 cut(s) 1586
Bse8I GATNNNNATC 2 cut(s) 795, 1971
BseBI CCWGG 6 cut(s) 739, 997, 1209, 1707, 2083, 2207
BseCI ATCGAT 3 cut(s) 667, 795, 1371
BseGI GGATG 5 cut(s) 16, 729, 979, 1087, 1197
BseJI GATNNNNATC 2 cut(s) 795, 1971
BseMI GCAATG 1 cut(s) 1586
BseMII CTCAG 4 cut(s) 607, 690, 1090, 2058
BseNI ACTGG 5 cut(s) 417, 763, 853, 1576, 1956
BseRI GAGGAG 5 cut(s) 634, 887, 1997, 2261, 2363
BseX3I CGGCCG 1 cut(s) 2334
BsgI GTGCAG 2 cut(s) 1109, 1505
Bsh1236I CGCG 6 cut(s) 1058, 1097, 1305, 1307, 2125, 2225
Bsh1285I CGRYCG 2 cut(s) 799, 2337
BshNI GGYRCC 9 cut(s) 4, 70, 136, 202, 268, 334, 710, 1537, 1620
BshTI ACCGGT 1 cut(s) 2438
BshVI ATCGAT 3 cut(s) 667, 795, 1371
BsiEI CGRYCG 2 cut(s) 799, 2337
BsiHKAI GWGCWC 1 cut(s) 2271
BsiHKCI CYCGRG 4 cut(s) 1108, 1347, 1908, 2145
BslFI GGGAC 8 cut(s) 491, 689, 991, 1277, 1540, 2066, 2162, 2413
BsmAI GTCTC 2 cut(s) 1746, 2375
BsmFI GGGAC 8 cut(s) 491, 689, 991, 1277, 1540, 2066, 2162, 2413
Bso31I GGTCTC 1 cut(s) 2375
BsoBI CYCGRG 4 cut(s) 1108, 1347, 1908, 2145
Bsp1286I GDGCHC 1 cut(s) 2271
Bsp1407I TGTACA 1 cut(s) 1650
BspCNI CTCAG 4 cut(s) 606, 691, 1089, 2059
BspDI ATCGAT 3 cut(s) 667, 795, 1371
BspFNI CGCG 6 cut(s) 1058, 1097, 1305, 1307, 2125, 2225
BspHI TCATGA 1 cut(s) 2310
BspMAI CTGCAG 1 cut(s) 2170
BspMI ACCTGC 1 cut(s) 1996
BspPI GGATC 7 cut(s) 485, 760, 834, 847, 910, 1451, 2220
BspQI GCTCTTC 1 cut(s) 2259
BspT107I GGYRCC 9 cut(s) 4, 70, 136, 202, 268, 334, 710, 1537, 1620
BspTNI GGTCTC 1 cut(s) 2375
BsrBI CCGCTC 1 cut(s) 2050
BsrDI GCAATG 1 cut(s) 1586
BsrFI RCCGGY 4 cut(s) 1540, 1623, 2420, 2438
BsrGI TGTACA 1 cut(s) 1650
BsrI ACTGG 5 cut(s) 417, 763, 853, 1576, 1956
BssAI RCCGGY 4 cut(s) 1540, 1623, 2420, 2438
BssNAI GTATAC 1 cut(s) 963
BssNI GRCGYC 3 cut(s) 1359, 1627, 1953
BssSI CACGAG 2 cut(s) 1127, 2234
BssT1I CCWWGG 2 cut(s) 1144, 1381
Bst1107I GTATAC 1 cut(s) 963
Bst2BI CACGAG 2 cut(s) 1127, 2234
Bst2UI CCWGG 6 cut(s) 739, 997, 1209, 1707, 2083, 2207
Bst4CI ACNGT 6 cut(s) 565, 715, 928, 982, 1179, 1247
Bst6I CTCTTC 6 cut(s) 678, 1331, 1679, 1937, 2124, 2259
BstACI GRCGYC 3 cut(s) 1359, 1627, 1953
BstAPI GCANNNNNTGC 2 cut(s) 428, 2174
BstAUI TGTACA 1 cut(s) 1650
BstBAI YACGTR 2 cut(s) 402, 483
BstC8I GCNNGC 3 cut(s) 445, 780, 1926
BstDEI CTNAG 6 cut(s) 593, 699, 805, 1067, 1076, 2067
BstDSI CCRYGG 1 cut(s) 2223
BstEII GGTNACC 1 cut(s) 1835
BstF5I GGATG 5 cut(s) 16, 729, 979, 1087, 1197
BstFNI CGCG 6 cut(s) 1058, 1097, 1305, 1307, 2125, 2225
BstH2I RGCGCY 1 cut(s) 1124
BstHHI GCGC 3 cut(s) 1123, 1307, 2125
BstMAI GTCTC 2 cut(s) 1746, 2375
BstMCI CGRYCG 2 cut(s) 799, 2337
BstMWI GCNNNNNNNGC 9 cut(s) 428, 779, 1103, 1162, 1192, 1777, 1952, 2072, 2174
BstNI CCWGG 6 cut(s) 739, 997, 1209, 1707, 2083, 2207
BstNSI RCATGY 2 cut(s) 394, 1033
BstPAI GACNNNNGTC 1 cut(s) 1714
BstPI GGTNACC 1 cut(s) 1835
BstSFI CTRYAG 2 cut(s) 1175, 2166
BstUI CGCG 6 cut(s) 1058, 1097, 1305, 1307, 2125, 2225
BstV2I GAAGAC 3 cut(s) 604, 759, 1362
BstX2I RGATCY 4 cut(s) 695, 839, 902, 1610
BstYI RGATCY 4 cut(s) 695, 839, 902, 1610
BstZ17I GTATAC 1 cut(s) 963
BstZI CGGCCG 1 cut(s) 2334
Bsu15I ATCGAT 3 cut(s) 667, 795, 1371
BsuI GTATCC 1 cut(s) 739
BsuTUI ATCGAT 3 cut(s) 667, 795, 1371
BtgI CCRYGG 1 cut(s) 2223
BtgZI GCGATG 3 cut(s) 1710, 1821, 2257
BtsCI GGATG 5 cut(s) 16, 729, 979, 1087, 1197
BtsI GCAGTG 3 cut(s) 874, 2247, 2283
BtsIMutI CAGTG 6 cut(s) 874, 1569, 1963, 2115, 2247, 2283
BveI ACCTGC 1 cut(s) 1996
Cac8I GCNNGC 3 cut(s) 445, 780, 1926
CaiI CAGNNNCTG 2 cut(s) 1183, 2174
CciI TCATGA 1 cut(s) 2310
CfoI GCGC 3 cut(s) 1123, 1307, 2125
Cfr10I RCCGGY 4 cut(s) 1540, 1623, 2420, 2438
Cfr42I CCGCGG 1 cut(s) 2226
Cfr9I CCCGGG 3 cut(s) 1108, 1347, 1908
ClaI ATCGAT 3 cut(s) 667, 795, 1371
CseI GACGC 5 cut(s) 1064, 1296, 1367, 1616, 1961
CspAI ACCGGT 1 cut(s) 2438
CspCI CAANNNNNGTGG 2 cut(s) 1262, 1297
CviAII CATG 8 cut(s) 391, 1030, 1258, 1828, 1918, 2021, 2184, 2311
DdeI CTNAG 6 cut(s) 593, 699, 805, 1067, 1076, 2067
DraIII CACNNNGTG 1 cut(s) 1483
DriI GACNNNNNGTC 1 cut(s) 1384
EaeI YGGCCR 7 cut(s) 396, 930, 1092, 1497, 1657, 2073, 2334
EagI CGGCCG 1 cut(s) 2334
Eam1104I CTCTTC 6 cut(s) 678, 1331, 1679, 1937, 2124, 2259
Eam1105I GACNNNNNGTC 1 cut(s) 1384
EarI CTCTTC 6 cut(s) 678, 1331, 1679, 1937, 2124, 2259
Ecl136II GAGCTC 1 cut(s) 2269
EclXI CGGCCG 1 cut(s) 2334
Eco130I CCWWGG 2 cut(s) 1144, 1381
Eco147I AGGCCT 1 cut(s) 1072
Eco24I GRGCYC 1 cut(s) 2271
Eco31I GGTCTC 1 cut(s) 2375
Eco32I GATATC 1 cut(s) 793
Eco47I GGWCC 6 cut(s) 26, 703, 978, 1709, 1824, 2427
Eco52I CGGCCG 1 cut(s) 2334
Eco53kI GAGCTC 1 cut(s) 2269
Eco57I CTGAAG 5 cut(s) 804, 1058, 1862, 1997, 2139
Eco72I CACGTG 2 cut(s) 402, 483
Eco88I CYCGRG 4 cut(s) 1108, 1347, 1908, 2145
Eco91I GGTNACC 1 cut(s) 1835
EcoICRI GAGCTC 1 cut(s) 2269
EcoO109I RGGNCCY 4 cut(s) 26, 703, 913, 2427
EcoO65I GGTNACC 1 cut(s) 1835
EcoRII CCWGG 6 cut(s) 737, 995, 1207, 1705, 2081, 2205
EcoRV GATATC 1 cut(s) 793
EcoT14I CCWWGG 2 cut(s) 1144, 1381
EcoT22I ATGCAT 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 2271
ErhI CCWWGG 2 cut(s) 1144, 1381
FaeI CATG 8 cut(s) 394, 1033, 1261, 1831, 1921, 2024, 2187, 2314
FalI AAGNNNNNCTT 4 cut(s) 1347, 1379, 1404, 1436
FaqI GGGAC 8 cut(s) 491, 689, 991, 1277, 1540, 2066, 2162, 2413
FatI CATG 8 cut(s) 390, 1029, 1257, 1827, 1917, 2020, 2183, 2310
FauI CCCGC 4 cut(s) 2043, 2118, 2230, 2358
FblI GTMKAC 4 cut(s) 150, 962, 1174, 1377
FokI GGATG 5 cut(s) 23, 736, 986, 1094, 1204
FriOI GRGCYC 1 cut(s) 2271
FspBI CTAG 4 cut(s) 30, 1052, 1382, 2415
GlaI GCGC 3 cut(s) 1122, 1306, 2124
GsuI CTGGAG 3 cut(s) 2060, 2123, 2228
HaeII RGCGCY 1 cut(s) 1124
HgaI GACGC 5 cut(s) 1064, 1296, 1367, 1616, 1961
HhaI GCGC 3 cut(s) 1123, 1307, 2125
Hin1I GRCGYC 3 cut(s) 1359, 1627, 1953
Hin1II CATG 8 cut(s) 394, 1033, 1261, 1831, 1921, 2024, 2187, 2314
Hin6I GCGC 3 cut(s) 1121, 1305, 2123
HinP1I GCGC 3 cut(s) 1121, 1305, 2123
HincII GTYRAC 1 cut(s) 1378
HindII GTYRAC 1 cut(s) 1378
HindIII AAGCTT 1 cut(s) 451
HinfI GANTC 9 cut(s) 728, 875, 1099, 1132, 1715, 1894, 1913, 2054, 2171
Hpy166II GTNNAC 5 cut(s) 151, 963, 1175, 1378, 1942
Hpy188III TCNNGA 8 cut(s) 457, 581, 1460, 1510, 2147, 2155, 2311, 2396
Hpy8I GTNNAC 5 cut(s) 151, 963, 1175, 1378, 1942
Hpy99I CGWCG 6 cut(s) 523, 884, 992, 1505, 1632, 1723
HpyCH4III ACNGT 6 cut(s) 565, 715, 928, 982, 1179, 1247
HpyCH4IV ACGT 4 cut(s) 401, 482, 1479, 1503
HpyCH4V TGCA 8 cut(s) 390, 422, 532, 614, 1126, 1486, 1924, 2168
HpyF10VI GCNNNNNNNGC 9 cut(s) 428, 779, 1103, 1162, 1192, 1777, 1952, 2072, 2174
HpyF3I CTNAG 6 cut(s) 593, 699, 805, 1067, 1076, 2067
HpySE526I ACGT 4 cut(s) 401, 482, 1479, 1503
Hsp92I GRCGYC 3 cut(s) 1359, 1627, 1953
Hsp92II CATG 8 cut(s) 394, 1033, 1261, 1831, 1921, 2024, 2187, 2314
HspAI GCGC 3 cut(s) 1121, 1305, 2123
KflI GGGWCCC 1 cut(s) 2427
KpnI GGTACC 8 cut(s) 8, 74, 140, 206, 272, 338, 714, 1541
KspI CCGCGG 1 cut(s) 2226
LguI GCTCTTC 1 cut(s) 2259
LmnI GCTCC 7 cut(s) 405, 1063, 1143, 1471, 1575, 2047, 2098
LweI GCATC 4 cut(s) 519, 1182, 1453, 1911
MaeI CTAG 4 cut(s) 30, 1052, 1382, 2415
MaeII ACGT 4 cut(s) 401, 482, 1479, 1503
MaeIII GTNAC 5 cut(s) 922, 1203, 1471, 1835, 2113
MbiI CCGCTC 1 cut(s) 2050
MflI RGATCY 4 cut(s) 695, 839, 902, 1610
MhlI GDGCHC 1 cut(s) 2271
MlsI TGGCCA 1 cut(s) 932
MluCI AATT 9 cut(s) 56, 122, 188, 254, 320, 544, 821, 1298, 2357
MluNI TGGCCA 1 cut(s) 932
MlyI GAGTC 5 cut(s) 884, 1724, 1922, 2048, 2180
MmeI TCCRAC 1 cut(s) 903
Mox20I TGGCCA 1 cut(s) 932
Mph1103I ATGCAT 1 cut(s) 534
MscI TGGCCA 1 cut(s) 932
MseI TTAA 2 cut(s) 548, 1787
MslI CAYNNNNRTG 3 cut(s) 579, 1371, 2276
Msp20I TGGCCA 1 cut(s) 932
MspA1I CMGCKG 5 cut(s) 1162, 1216, 1783, 2089, 2225
MvaI CCWGG 6 cut(s) 739, 997, 1209, 1707, 2083, 2207
MvnI CGCG 6 cut(s) 1058, 1097, 1305, 1307, 2125, 2225
MwoI GCNNNNNNNGC 9 cut(s) 428, 779, 1103, 1162, 1192, 1777, 1952, 2072, 2174
NlaIII CATG 8 cut(s) 394, 1033, 1261, 1831, 1921, 2024, 2187, 2314
NmeAIII GCCGAG 1 cut(s) 836
NmuCI GTSAC 5 cut(s) 922, 1203, 1471, 1835, 2113
NsiI ATGCAT 1 cut(s) 534
NspI RCATGY 2 cut(s) 394, 1033
OliI CACNNNNGTG 1 cut(s) 579
PagI TCATGA 1 cut(s) 2310
PaqCI CACCTGC 1 cut(s) 1996
PceI AGGCCT 1 cut(s) 1072
PciSI GCTCTTC 1 cut(s) 2259
PcsI WCGNNNNNNNCGW 2 cut(s) 842, 1803
PfeI GAWTC 4 cut(s) 728, 1099, 1132, 1894
PflMI CCANNNNNTGG 1 cut(s) 1730
PinAI ACCGGT 1 cut(s) 2438
Ple19I CGATCG 1 cut(s) 799
PleI GAGTC 5 cut(s) 883, 1723, 1921, 2048, 2179
PmaCI CACGTG 2 cut(s) 402, 483
PmlI CACGTG 2 cut(s) 402, 483
PpsI GAGTC 5 cut(s) 883, 1723, 1921, 2048, 2179
Ppu21I YACGTR 2 cut(s) 402, 483
PpuMI RGGWCCY 3 cut(s) 26, 703, 2427
PshAI GACNNNNGTC 1 cut(s) 1714
Psp124BI GAGCTC 1 cut(s) 2271
Psp5II RGGWCCY 3 cut(s) 26, 703, 2427
Psp6I CCWGG 6 cut(s) 737, 995, 1207, 1705, 2081, 2205
PspCI CACGTG 2 cut(s) 402, 483
PspEI GGTNACC 1 cut(s) 1835
PspGI CCWGG 6 cut(s) 737, 995, 1207, 1705, 2081, 2205
PspPPI RGGWCCY 3 cut(s) 26, 703, 2427
PstI CTGCAG 1 cut(s) 2170
PstNI CAGNNNCTG 2 cut(s) 1183, 2174
PsuI RGATCY 4 cut(s) 695, 839, 902, 1610
PvuI CGATCG 1 cut(s) 799
PvuII CAGCTG 2 cut(s) 1216, 1783
RseI CAYNNNNRTG 3 cut(s) 579, 1371, 2276
SacI GAGCTC 1 cut(s) 2271
SacII CCGCGG 1 cut(s) 2226
SalI GTCGAC 1 cut(s) 1376
SapI GCTCTTC 1 cut(s) 2259
SaqAI TTAA 2 cut(s) 548, 1787
SchI GAGTC 5 cut(s) 884, 1724, 1922, 2048, 2180
SduI GDGCHC 1 cut(s) 2271
SfaNI GCATC 4 cut(s) 519, 1182, 1453, 1911
SfcI CTRYAG 2 cut(s) 1175, 2166
Sfr303I CCGCGG 1 cut(s) 2226
SgrAI CRCCGGYG 1 cut(s) 1623
SgrBI CCGCGG 1 cut(s) 2226
SinI GGWCC 6 cut(s) 26, 703, 978, 1709, 1824, 2427
SmaI CCCGGG 3 cut(s) 1110, 1349, 1910
SmiMI CAYNNNNRTG 3 cut(s) 579, 1371, 2276
Sse9I AATT 9 cut(s) 56, 122, 188, 254, 320, 544, 821, 1298, 2357
SseBI AGGCCT 1 cut(s) 1072
SspMI CTAG 4 cut(s) 30, 1052, 1382, 2415
SstI GAGCTC 1 cut(s) 2271
StuI AGGCCT 1 cut(s) 1072
StyI CCWWGG 2 cut(s) 1144, 1381
TaaI ACNGT 6 cut(s) 565, 715, 928, 982, 1179, 1247
TaiI ACGT 4 cut(s) 404, 485, 1482, 1506
TaqII GACCGA 1 cut(s) 1392
TasI AATT 9 cut(s) 56, 122, 188, 254, 320, 544, 821, 1298, 2357
TatI WGTACW 2 cut(s) 1650, 2250
TauI GCSGC 5 cut(s) 1097, 2078, 2081, 2336, 2405
TfiI GAWTC 4 cut(s) 728, 1099, 1132, 1894
Tru1I TTAA 2 cut(s) 548, 1787
Tru9I TTAA 2 cut(s) 548, 1787
TscAI CASTG 6 cut(s) 874, 1576, 1963, 2122, 2247, 2290
TseFI GTSAC 5 cut(s) 922, 1203, 1471, 1835, 2113
Tsp45I GTSAC 5 cut(s) 922, 1203, 1471, 1835, 2113
TspDTI ATGAA 6 cut(s) 1028, 1311, 1824, 2009, 2327, 2364
TspGWI ACGGA 1 cut(s) 1204
TspMI CCCGGG 3 cut(s) 1108, 1347, 1908
TspRI CASTG 6 cut(s) 874, 1576, 1963, 2122, 2247, 2290
Van91I CCANNNNNTGG 1 cut(s) 1730
VpaK11BI GGWCC 6 cut(s) 26, 703, 978, 1709, 1824, 2427
XapI RAATTY 6 cut(s) 56, 122, 188, 544, 1298, 2357
XceI RCATGY 2 cut(s) 394, 1033
XcmI CCANNNNNNNNNTGG 1 cut(s) 2438
XmaI CCCGGG 3 cut(s) 1108, 1347, 1908
XmaJI CCTAGG 1 cut(s) 1381
XmiI GTMKAC 4 cut(s) 150, 962, 1174, 1377
XspI CTAG 4 cut(s) 30, 1052, 1382, 2415
Zsp2I ATGCAT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.