Rmu_sc0005665.1_g000042

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005665.1
OG0000087
Physical Location & Seq
Reverse (-)
167123 .. 169483
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005665.1_g000042.1.cds

Sequence Viewer

Length: 2079 bp
atgggatcgtcgtaccagtcttctgccaggcaagctgaggtagatatcgaccggtacttagcccgggtagatcaattagcagagaacacggggtcttcgactggggtgttctcggagagtaatgaggagtccgacgagggtgagagtgagggtggatccgcggaggccccggtagtcacagtggccattctcgagggcattccgaagctgaggtacacacttgcggacgggaccgtatgcgacgaacccgggagaagtatgacgatgaaggagatcatcgacatgggactgaagtgggggatatcggacgcggtggaggttaggcctcttagggatggagagatggccgcaaatcctgccccggggtgggtggcgctgcacgagaatcaattccaccaaggcttatcgctaccgttgccccggtgcctacagtatctgctgcggatgctgaacctgtcactggggcagctgaccccgaatgctgttcgccagatatacagtatgatggctatgtgggacttgtgccaacaagggtggccttccgtaaacgagttccgcgcggtacatcgggtactgtactcaaggaagcagtcttgtgcgggtacggttaccttcgccgctagggatttcgagccactagttaccgacatgcctacctcgatgagcaaaaggtggaggaacaaggtgttcctagctggggggcggtggcagattaaaaataagaagtggcagctgaccggtaccttccaagctatcggggaccagtcctatactctatccgaagtagaaaggaagaggatagtccgggtatacgccgtttggtcagagaaagagaggagctcttatagattcatccggcactctatactttataggctagggctagggtggctccccgtgaaagcgccgaagaggaaaccccgaaaaggcaaggaggaggacagaatggatgatgcccaactgatggatatgctgatgggccagggagaagacgccctccacatcgaggtcgacctagggtcgaagggtgcgagtcggtcaattgaagaaacccttctggagatcatcgacgagggatatggtgaacctgaccccgacgcgcccgtgacccacgtcgcgcagccctccatggccgatgttataacgatagatgacaccgggatgggaaaagtaccggccctggtgcctatctcctctcgttccactgggagcgatgaggctctactccctgagtcgtcaccttctcttggcctgttatctcccgccattccgggaatccccaagaagcccatcaagcagctgctgagtgagtacggggttgccgatgaaaagttcgtgcggtccatgcttggggatctgaaggatatcgacctcgaccgggttcgggccaaggataatactccccaggagaatcgcagtcttgcccgggaatcaatgatgcgggcactcttcaatgtgtacgccattgatgccagcgaggaggatactcatctgaaggaggaggttagcaatctctccgggcaggtgaagtatcttcatggcgagaaggccaagctggagaatgagcgggacgcattgagggcggagctggccgccgctaagcagcggatcaaggggcttgagggcgaagtttctgaggcccgggaagaggtaaaaaacgcccgggactctgagaaaaaggctgcagagtctgccgtctcatggaaggagaaggcaaaccacctggaggattgcctgcccgcggagaggcacgaggccgtggaggagtacaagtcctcggaagagctcatctctatgctggctgctgcacaagataaggctgtcatcatgaagttcagggagtgggtggcgaccggatatttagatgaagctaaattcaggcggggtcttctggagaaaaagaagaaggatcgggacgcggcgaccaagtctggtgccggtgggtctcagagtaccgggccattcatgatcctgtatcgagctgaccttagctgtagtcttctggcctcgaccttatcttctagtgctaggccgtcaaccatgtatttcaaaattgggtccatccatgaagctgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

692

Amino Acids

76.82

Weight (kDa)

5.6

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1142
AarI CACCTGC 1 cut(s) 1513
Acc36I ACCTGC 1 cut(s) 1513
Acc65I GGTACC 1 cut(s) 740
AccB1I GGYRCC 4 cut(s) 423, 740, 1183, 1934
AccB7I CCANNNNNTGG 1 cut(s) 964
AccBSI CCGCTC 1 cut(s) 1567
AccI GTMKAC 2 cut(s) 810, 1011
AccII CGCG 8 cut(s) 161, 311, 558, 560, 1100, 1118, 1742, 1919
AclWI GGATC 7 cut(s) 13, 150, 163, 1362, 1616, 1917, 1963
AcoI YGGCCR 4 cut(s) 183, 345, 1131, 1590
AcsI RAATTY 1 cut(s) 1874
AcuI CTGAAG 3 cut(s) 311, 1379, 1514
AcyI GRCGYC 1 cut(s) 993
AgeI ACCGGT 2 cut(s) 51, 737
AgsI TTSAA 3 cut(s) 1046, 1453, 2050
AhdI GACNNNNNGTC 1 cut(s) 1018
AhlI ACTAGT 1 cut(s) 637
AjiI CACGTC 1 cut(s) 1114
AjnI CCWGG 5 cut(s) 26, 981, 1179, 1404, 1722
Alw21I GWGCWC 2 cut(s) 842, 1788
Alw26I GTCTC 2 cut(s) 1702, 1950
AlwI GGATC 7 cut(s) 13, 150, 163, 1362, 1616, 1917, 1963
AlwNI CAGNNNCTG 3 cut(s) 436, 1303, 1691
Ama87I CYCGRG 7 cut(s) 63, 191, 248, 361, 1425, 1641, 1662
ApoI RAATTY 1 cut(s) 1874
AsiGI ACCGGT 2 cut(s) 51, 737
Asp700I GAANNNNTTC 2 cut(s) 389, 1053
Asp718I GGTACC 1 cut(s) 740
AspA2I CCTAGG 1 cut(s) 1015
AspLEI GCGC 5 cut(s) 376, 560, 907, 1102, 1120
AsuHPI GGTGA 4 cut(s) 152, 1094, 1230, 1537
AvaI CYCGRG 7 cut(s) 63, 191, 248, 361, 1425, 1641, 1662
AvaII GGWCC 4 cut(s) 231, 760, 1341, 2058
AvrII CCTAGG 1 cut(s) 1015
BaeGI GKGCMC 1 cut(s) 1447
BalI TGGCCA 1 cut(s) 185
BamHI GGATCC 1 cut(s) 155
BanI GGYRCC 4 cut(s) 423, 740, 1183, 1934
BanII GRGCYC 2 cut(s) 842, 1788
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BauI CACGAG 2 cut(s) 380, 1751
BbsI GAAGAC 5 cut(s) 12, 87, 996, 1880, 1991
Bbv12I GWGCWC 2 cut(s) 842, 1788
BbvCI CCTCAGC 2 cut(s) 36, 209
BccI CCATC 8 cut(s) 329, 337, 499, 958, 970, 1156, 1298, 2069
BceAI ACGGC 4 cut(s) 800, 1679, 1742, 2017
BciT130I CCWGG 5 cut(s) 28, 983, 1181, 1406, 1724
BciVI GTATCC 1 cut(s) 1477
BcoDI GTCTC 2 cut(s) 1702, 1950
BcuI ACTAGT 1 cut(s) 637
BfaI CTAG 8 cut(s) 621, 638, 692, 878, 884, 1016, 2022, 2028
BfmI CTRYAG 3 cut(s) 428, 1683, 1993
BfoI RGCGCY 2 cut(s) 377, 908
BfuAI ACCTGC 1 cut(s) 1513
BfuI GTATCC 1 cut(s) 1477
BlnI CCTAGG 1 cut(s) 1015
BlpI GCTNAGC 1 cut(s) 1599
Bme18I GGWCC 4 cut(s) 231, 760, 1341, 2058
BmeRI GACNNNNNGTC 1 cut(s) 1018
BmeT110I CYCGRG 7 cut(s) 63, 191, 248, 361, 1425, 1641, 1662
BmgBI CACGTC 1 cut(s) 1114
BmrI ACTGGG 3 cut(s) 111, 470, 1215
BmsI GCATC 4 cut(s) 435, 943, 1428, 1459
BmuI ACTGGG 3 cut(s) 111, 470, 1215
BoxI GACNNNNGTC 1 cut(s) 1112
BpiI GAAGAC 5 cut(s) 12, 87, 996, 1880, 1991
BplI GAGNNNNNCTC 4 cut(s) 824, 856, 1775, 1807
BpmI CTGGAG 4 cut(s) 1079, 1577, 1745, 1913
Bpu10I CCTNAGC 3 cut(s) 36, 209, 1988
Bpu1102I GCTNAGC 1 cut(s) 1599
BpuEI CTTGAG 2 cut(s) 565, 1640
BsaBI GATNNNNATC 1 cut(s) 1488
BsaHI GRCGYC 1 cut(s) 993
BsaI GGTCTC 1 cut(s) 1950
BsaWI WCCGGW 3 cut(s) 51, 737, 1853
BsaXI ACNNNNNCTCC 2 cut(s) 1757, 1787
Bse118I RCCGGY 4 cut(s) 51, 737, 1174, 1937
Bse1I ACTGG 5 cut(s) 16, 106, 465, 763, 1210
Bse8I GATNNNNATC 1 cut(s) 1488
BseBI CCWGG 5 cut(s) 28, 983, 1181, 1406, 1724
BseGI GGATG 6 cut(s) 340, 450, 852, 955, 1167, 2061
BseJI GATNNNNATC 1 cut(s) 1488
BseMII CTCAG 7 cut(s) 27, 200, 1221, 1295, 1626, 1662, 1961
BseNI ACTGG 5 cut(s) 16, 106, 465, 763, 1210
BseRI GAGGAG 7 cut(s) 140, 850, 950, 1183, 1493, 1514, 1778
BseSI GKGCMC 1 cut(s) 1447
BseYI CCCAGC 1 cut(s) 695
BsgI GTGCAG 2 cut(s) 362, 1791
Bsh1236I CGCG 8 cut(s) 161, 311, 558, 560, 1100, 1118, 1742, 1919
Bsh1285I CGRYCG 3 cut(s) 52, 1378, 1854
BshNI GGYRCC 4 cut(s) 423, 740, 1183, 1934
BshTI ACCGGT 2 cut(s) 51, 737
BsiEI CGRYCG 3 cut(s) 52, 1378, 1854
BsiHKAI GWGCWC 2 cut(s) 842, 1788
BsiHKCI CYCGRG 7 cut(s) 63, 191, 248, 361, 1425, 1641, 1662
BslFI GGGAC 7 cut(s) 244, 300, 530, 773, 1583, 1679, 1928
BsmAI GTCTC 2 cut(s) 1702, 1950
BsmBI CGTCTC 1 cut(s) 1702
BsmFI GGGAC 7 cut(s) 244, 300, 530, 773, 1583, 1679, 1928
BsmI GAATGC 2 cut(s) 198, 484
Bso31I GGTCTC 1 cut(s) 1950
BsoBI CYCGRG 7 cut(s) 63, 191, 248, 361, 1425, 1641, 1662
Bsp1286I GDGCHC 3 cut(s) 842, 1447, 1788
Bsp143I GATC 9 cut(s) 5, 70, 155, 273, 1062, 1354, 1608, 1909, 1968
Bsp1720I GCTNAGC 1 cut(s) 1599
Bsp19I CCATGG 1 cut(s) 1128
BspCNI CTCAG 7 cut(s) 28, 201, 1222, 1296, 1627, 1663, 1960
BspFNI CGCG 8 cut(s) 161, 311, 558, 560, 1100, 1118, 1742, 1919
BspHI TCATGA 2 cut(s) 1827, 1965
BspMAI CTGCAG 1 cut(s) 1687
BspMI ACCTGC 1 cut(s) 1513
BspPI GGATC 7 cut(s) 13, 150, 163, 1362, 1616, 1917, 1963
BspQI GCTCTTC 1 cut(s) 1776
BspT107I GGYRCC 4 cut(s) 423, 740, 1183, 1934
BspTNI GGTCTC 1 cut(s) 1950
BsrBI CCGCTC 1 cut(s) 1567
BsrFI RCCGGY 4 cut(s) 51, 737, 1174, 1937
BsrI ACTGG 5 cut(s) 16, 106, 465, 763, 1210
BssAI RCCGGY 4 cut(s) 51, 737, 1174, 1937
BssMI GATC 9 cut(s) 5, 70, 155, 273, 1062, 1354, 1608, 1909, 1968
BssNAI GTATAC 1 cut(s) 811
BssNI GRCGYC 1 cut(s) 993
BssSI CACGAG 2 cut(s) 380, 1751
BssT1I CCWWGG 4 cut(s) 397, 1015, 1128, 1389
Bst1107I GTATAC 1 cut(s) 811
Bst2BI CACGAG 2 cut(s) 380, 1751
Bst2UI CCWGG 5 cut(s) 28, 983, 1181, 1406, 1724
Bst4CI ACNGT 7 cut(s) 181, 235, 414, 432, 500, 576, 607
Bst6I CTCTTC 5 cut(s) 788, 905, 1454, 1641, 1776
BstACI GRCGYC 1 cut(s) 993
BstAPI GCANNNNNTGC 2 cut(s) 356, 1691
BstC8I GCNNGC 7 cut(s) 33, 1443, 1474, 1590, 1736, 1740, 1800
BstDSI CCRYGG 4 cut(s) 159, 1128, 1740, 1758
BstEII GGTNACC 1 cut(s) 607
BstF5I GGATG 6 cut(s) 340, 450, 852, 955, 1167, 2061
BstFNI CGCG 8 cut(s) 161, 311, 558, 560, 1100, 1118, 1742, 1919
BstH2I RGCGCY 2 cut(s) 377, 908
BstHHI GCGC 5 cut(s) 376, 560, 907, 1102, 1120
BstKTI GATC 9 cut(s) 8, 73, 158, 276, 1065, 1357, 1611, 1912, 1971
BstMAI GTCTC 2 cut(s) 1702, 1950
BstMBI GATC 9 cut(s) 5, 70, 155, 273, 1062, 1354, 1608, 1909, 1968
BstMCI CGRYCG 3 cut(s) 52, 1378, 1854
BstNI CCWGG 5 cut(s) 28, 983, 1181, 1406, 1724
BstNSI RCATGY 1 cut(s) 652
BstPAI GACNNNNGTC 1 cut(s) 1112
BstPI GGTNACC 1 cut(s) 607
BstSFI CTRYAG 3 cut(s) 428, 1683, 1993
BstSLI GKGCMC 1 cut(s) 1447
BstUI CGCG 8 cut(s) 161, 311, 558, 560, 1100, 1118, 1742, 1919
BstV2I GAAGAC 5 cut(s) 12, 87, 996, 1880, 1991
BstX2I RGATCY 2 cut(s) 155, 1354
BstYI RGATCY 2 cut(s) 155, 1354
BstZ17I GTATAC 1 cut(s) 811
BsuI GTATCC 1 cut(s) 1477
BtgI CCRYGG 4 cut(s) 159, 1128, 1740, 1758
BtgZI GCGATG 1 cut(s) 1227
BtrI CACGTC 1 cut(s) 1114
BtsCI GGATG 6 cut(s) 340, 450, 852, 955, 1167, 2061
BtsIMutI CAGTG 3 cut(s) 186, 458, 1203
BveI ACCTGC 1 cut(s) 1513
Cac8I GCNNGC 7 cut(s) 33, 1443, 1474, 1590, 1736, 1740, 1800
CaiI CAGNNNCTG 3 cut(s) 436, 1303, 1691
CciI TCATGA 2 cut(s) 1827, 1965
CfoI GCGC 5 cut(s) 376, 560, 907, 1102, 1120
Cfr10I RCCGGY 4 cut(s) 51, 737, 1174, 1937
Cfr42I CCGCGG 2 cut(s) 162, 1743
Cfr9I CCCGGG 6 cut(s) 63, 248, 361, 1425, 1641, 1662
CseI GACGC 5 cut(s) 317, 1001, 1106, 1580, 1925
CspAI ACCGGT 2 cut(s) 51, 737
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
DpnI GATC 9 cut(s) 7, 72, 157, 275, 1064, 1356, 1610, 1911, 1970
DpnII GATC 9 cut(s) 5, 70, 155, 273, 1062, 1354, 1608, 1909, 1968
DriI GACNNNNNGTC 1 cut(s) 1018
EaeI YGGCCR 4 cut(s) 183, 345, 1131, 1590
Eam1104I CTCTTC 5 cut(s) 788, 905, 1454, 1641, 1776
Eam1105I GACNNNNNGTC 1 cut(s) 1018
EarI CTCTTC 5 cut(s) 788, 905, 1454, 1641, 1776
EciI GGCGGA 1 cut(s) 1598
Ecl136II GAGCTC 2 cut(s) 840, 1786
Eco130I CCWWGG 4 cut(s) 397, 1015, 1128, 1389
Eco147I AGGCCT 1 cut(s) 325
Eco24I GRGCYC 2 cut(s) 842, 1788
Eco31I GGTCTC 1 cut(s) 1950
Eco32I GATATC 3 cut(s) 46, 303, 1366
Eco47I GGWCC 4 cut(s) 231, 760, 1341, 2058
Eco53kI GAGCTC 2 cut(s) 840, 1786
Eco57I CTGAAG 3 cut(s) 311, 1379, 1514
Eco88I CYCGRG 7 cut(s) 63, 191, 248, 361, 1425, 1641, 1662
Eco91I GGTNACC 1 cut(s) 607
EcoICRI GAGCTC 2 cut(s) 840, 1786
EcoO109I RGGNCCY 1 cut(s) 166
EcoO65I GGTNACC 1 cut(s) 607
EcoRII CCWGG 5 cut(s) 26, 981, 1179, 1404, 1722
EcoRV GATATC 3 cut(s) 46, 303, 1366
EcoT14I CCWWGG 4 cut(s) 397, 1015, 1128, 1389
EcoT38I GRGCYC 2 cut(s) 842, 1788
ErhI CCWWGG 4 cut(s) 397, 1015, 1128, 1389
Esp3I CGTCTC 1 cut(s) 1702
FalI AAGNNNNNCTT 2 cut(s) 1038, 1070
FaqI GGGAC 7 cut(s) 244, 300, 530, 773, 1583, 1679, 1928
FauI CCCGC 6 cut(s) 592, 1270, 1434, 1560, 1747, 1875
FblI GTMKAC 2 cut(s) 810, 1011
FokI GGATG 6 cut(s) 347, 457, 839, 962, 1174, 2048
FriOI GRGCYC 2 cut(s) 842, 1788
FspBI CTAG 8 cut(s) 621, 638, 692, 878, 884, 1016, 2022, 2028
GlaI GCGC 5 cut(s) 375, 559, 906, 1101, 1119
GsaI CCCAGC 1 cut(s) 699
GsuI CTGGAG 4 cut(s) 1079, 1577, 1745, 1913
HaeII RGCGCY 2 cut(s) 377, 908
HgaI GACGC 5 cut(s) 317, 1001, 1106, 1580, 1925
HhaI GCGC 5 cut(s) 376, 560, 907, 1102, 1120
Hin1I GRCGYC 1 cut(s) 993
Hin6I GCGC 5 cut(s) 374, 558, 905, 1100, 1118
HinP1I GCGC 5 cut(s) 374, 558, 905, 1100, 1118
HincII GTYRAC 2 cut(s) 1012, 2037
HindII GTYRAC 2 cut(s) 1012, 2037
HphI GGTGA 4 cut(s) 152, 1094, 1230, 1537
Hpy166II GTNNAC 7 cut(s) 216, 547, 811, 1012, 1085, 1459, 2037
Hpy188III TCNNGA 6 cut(s) 191, 1058, 1828, 1892, 1913, 1966
Hpy8I GTNNAC 7 cut(s) 216, 547, 811, 1012, 1085, 1459, 2037
Hpy99I CGWCG 6 cut(s) 13, 137, 245, 1073, 1100, 1118
HpyCH4III ACNGT 7 cut(s) 181, 235, 414, 432, 500, 576, 607
HpyCH4IV ACGT 1 cut(s) 1113
HpyCH4V TGCA 3 cut(s) 379, 1685, 1808
HpySE526I ACGT 1 cut(s) 1113
Hsp92I GRCGYC 1 cut(s) 993
HspAI GCGC 5 cut(s) 374, 558, 905, 1100, 1118
KpnI GGTACC 1 cut(s) 744
KspI CCGCGG 2 cut(s) 162, 1743
Kzo9I GATC 9 cut(s) 5, 70, 155, 273, 1062, 1354, 1608, 1909, 1968
LguI GCTCTTC 1 cut(s) 1776
LmnI GCTCC 4 cut(s) 837, 897, 1209, 1585
LweI GCATC 4 cut(s) 435, 943, 1428, 1459
MaeI CTAG 8 cut(s) 621, 638, 692, 878, 884, 1016, 2022, 2028
MaeII ACGT 1 cut(s) 1113
MaeIII GTNAC 6 cut(s) 175, 456, 607, 640, 1105, 1236
MalI GATC 9 cut(s) 7, 72, 157, 275, 1064, 1356, 1610, 1911, 1970
MbiI CCGCTC 1 cut(s) 1567
MboI GATC 9 cut(s) 5, 70, 155, 273, 1062, 1354, 1608, 1909, 1968
MfeI CAATTG 1 cut(s) 1041
MflI RGATCY 2 cut(s) 155, 1354
MhlI GDGCHC 3 cut(s) 842, 1447, 1788
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 5 cut(s) 74, 389, 1041, 1874, 2052
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 5 cut(s) 137, 1042, 1241, 1661, 1697
MmeI TCCRAC 1 cut(s) 156
Mox20I TGGCCA 1 cut(s) 185
MroXI GAANNNNTTC 2 cut(s) 389, 1053
MscI TGGCCA 1 cut(s) 185
MseI TTAA 1 cut(s) 714
MslI CAYNNNNRTG 3 cut(s) 281, 1160, 1793
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 6 cut(s) 161, 469, 733, 1300, 1606, 1742
MunI CAATTG 1 cut(s) 1041
Mva1269I GAATGC 2 cut(s) 198, 484
MvaI CCWGG 5 cut(s) 28, 983, 1181, 1406, 1724
MvnI CGCG 8 cut(s) 161, 311, 558, 560, 1100, 1118, 1742, 1919
NcoI CCATGG 1 cut(s) 1128
NdeII GATC 9 cut(s) 5, 70, 155, 273, 1062, 1354, 1608, 1909, 1968
NmuCI GTSAC 4 cut(s) 175, 456, 1105, 1236
NspI RCATGY 1 cut(s) 652
PaeR7I CTCGAG 1 cut(s) 191
PagI TCATGA 2 cut(s) 1827, 1965
PaqCI CACCTGC 1 cut(s) 1513
PceI AGGCCT 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 1776
PcsI WCGNNNNNNNCGW 3 cut(s) 95, 1028, 1320
PctI GAATGC 2 cut(s) 198, 484
PdmI GAANNNNTTC 2 cut(s) 389, 1053
PfeI GAWTC 5 cut(s) 385, 849, 1275, 1411, 1430
PflFI GACNNNGTC 1 cut(s) 1927
PflMI CCANNNNNTGG 1 cut(s) 964
PfoI TCCNGGA 1 cut(s) 1270
PinAI ACCGGT 2 cut(s) 51, 737
PleI GAGTC 5 cut(s) 136, 1041, 1240, 1661, 1696
PpsI GAGTC 5 cut(s) 136, 1041, 1240, 1661, 1696
PshAI GACNNNNGTC 1 cut(s) 1112
PsiI TTATAA 1 cut(s) 1142
Psp124BI GAGCTC 2 cut(s) 842, 1788
Psp6I CCWGG 5 cut(s) 26, 981, 1179, 1404, 1722
PspEI GGTNACC 1 cut(s) 607
PspFI CCCAGC 1 cut(s) 695
PspGI CCWGG 5 cut(s) 26, 981, 1179, 1404, 1722
PstI CTGCAG 1 cut(s) 1687
PstNI CAGNNNCTG 3 cut(s) 436, 1303, 1691
PsuI RGATCY 2 cut(s) 155, 1354
PsyI GACNNNGTC 1 cut(s) 1927
PvuII CAGCTG 3 cut(s) 469, 733, 1300
RseI CAYNNNNRTG 3 cut(s) 281, 1160, 1793
SacI GAGCTC 2 cut(s) 842, 1788
SacII CCGCGG 2 cut(s) 162, 1743
SalI GTCGAC 1 cut(s) 1010
SapI GCTCTTC 1 cut(s) 1776
SaqAI TTAA 1 cut(s) 714
Sau3AI GATC 9 cut(s) 5, 70, 155, 273, 1062, 1354, 1608, 1909, 1968
SchI GAGTC 5 cut(s) 137, 1042, 1241, 1661, 1697
SduI GDGCHC 3 cut(s) 842, 1447, 1788
SfaNI GCATC 4 cut(s) 435, 943, 1428, 1459
SfcI CTRYAG 3 cut(s) 428, 1683, 1993
Sfr274I CTCGAG 1 cut(s) 191
Sfr303I CCGCGG 2 cut(s) 162, 1743
SgrBI CCGCGG 2 cut(s) 162, 1743
SinI GGWCC 4 cut(s) 231, 760, 1341, 2058
SlaI CTCGAG 1 cut(s) 191
SmaI CCCGGG 6 cut(s) 65, 250, 363, 1427, 1643, 1664
SmiMI CAYNNNNRTG 3 cut(s) 281, 1160, 1793
SmlI CTYRAG 3 cut(s) 191, 580, 1619
SmoI CTYRAG 3 cut(s) 191, 580, 1619
SpeI ACTAGT 1 cut(s) 637
Sse9I AATT 5 cut(s) 74, 389, 1041, 1874, 2052
SseBI AGGCCT 1 cut(s) 325
SspMI CTAG 8 cut(s) 621, 638, 692, 878, 884, 1016, 2022, 2028
SstI GAGCTC 2 cut(s) 842, 1788
StuI AGGCCT 1 cut(s) 325
StyI CCWWGG 4 cut(s) 397, 1015, 1128, 1389
TaaI ACNGT 7 cut(s) 181, 235, 414, 432, 500, 576, 607
TaiI ACGT 1 cut(s) 1116
TaqII GACCGA 1 cut(s) 1026
TasI AATT 5 cut(s) 74, 389, 1041, 1874, 2052
TatI WGTACW 2 cut(s) 576, 1767
TauI GCSGC 5 cut(s) 350, 620, 1595, 1598, 1922
TfiI GAWTC 5 cut(s) 385, 849, 1275, 1411, 1430
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TscAI CASTG 3 cut(s) 186, 465, 1210
TseFI GTSAC 4 cut(s) 175, 456, 1105, 1236
Tsp45I GTSAC 4 cut(s) 175, 456, 1105, 1236
TspDTI ATGAA 7 cut(s) 281, 841, 1341, 1526, 1844, 1881, 1954
TspGWI ACGGA 1 cut(s) 532
TspMI CCCGGG 6 cut(s) 63, 248, 361, 1425, 1641, 1662
TspRI CASTG 3 cut(s) 186, 465, 1210
Tth111I GACNNNGTC 1 cut(s) 1927
Van91I CCANNNNNTGG 1 cut(s) 964
VpaK11BI GGWCC 4 cut(s) 231, 760, 1341, 2058
XapI RAATTY 1 cut(s) 1874
XceI RCATGY 1 cut(s) 652
XhoI CTCGAG 1 cut(s) 191
XmaI CCCGGG 6 cut(s) 63, 248, 361, 1425, 1641, 1662
XmaJI CCTAGG 1 cut(s) 1015
XmiI GTMKAC 2 cut(s) 810, 1011
XmnI GAANNNNTTC 2 cut(s) 389, 1053
XspI CTAG 8 cut(s) 621, 638, 692, 878, 884, 1016, 2022, 2028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.