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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 283 |
| AccBSI | CCGCTC | 1 cut(s) | 279 |
| AccIII | TCCGGA | 1 cut(s) | 289 |
| AciI | CCGC | 3 cut(s) | 56, 88, 279 |
| AclWI | GGATC | 2 cut(s) | 207, 333 |
| AcoI | YGGCCR | 1 cut(s) | 57 |
| AcsI | RAATTY | 2 cut(s) | 427, 484 |
| AdeI | CACNNNGTG | 1 cut(s) | 211 |
| AfaI | GTAC | 1 cut(s) | 159 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 84, 363 |
| AgsI | TTSAA | 5 cut(s) | 100, 403, 421, 490, 499 |
| AluBI | AGCT | 1 cut(s) | 493 |
| AluI | AGCT | 1 cut(s) | 493 |
| AlwI | GGATC | 2 cut(s) | 207, 333 |
| Ama87I | CYCGRG | 1 cut(s) | 131 |
| Aor13HI | TCCGGA | 1 cut(s) | 289 |
| AoxI | GGCC | 1 cut(s) | 57 |
| ApeKI | GCWGC | 2 cut(s) | 11, 170 |
| ApoI | RAATTY | 2 cut(s) | 427, 484 |
| AspLEI | GCGC | 1 cut(s) | 175 |
| AsuC2I | CCSGG | 2 cut(s) | 132, 133 |
| AsuHPI | GGTGA | 2 cut(s) | 136, 197 |
| AvaI | CYCGRG | 1 cut(s) | 131 |
| BanI | GGYRCC | 1 cut(s) | 283 |
| BbvI | GCAGC | 1 cut(s) | 182 |
| BccI | CCATC | 1 cut(s) | 359 |
| BceAI | ACGGC | 1 cut(s) | 11 |
| BclI | TGATCA | 2 cut(s) | 382, 432 |
| BcnI | CCSGG | 2 cut(s) | 132, 133 |
| BfoI | RGCGCY | 1 cut(s) | 176 |
| BisI | GCNGC | 3 cut(s) | 12, 57, 171 |
| BlsI | GCNGC | 3 cut(s) | 13, 58, 172 |
| Bme1390I | CCNGG | 2 cut(s) | 132, 133 |
| BmeT110I | CYCGRG | 1 cut(s) | 131 |
| BmiI | GGNNCC | 1 cut(s) | 285 |
| BmrFI | CCNGG | 2 cut(s) | 132, 133 |
| BpuMI | CCSGG | 2 cut(s) | 132, 133 |
| BsaJI | CCNNGG | 3 cut(s) | 131, 132, 161 |
| BsaWI | WCCGGW | 2 cut(s) | 289, 356 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 84, 363 |
| BseAI | TCCGGA | 1 cut(s) | 289 |
| BseDI | CCNNGG | 3 cut(s) | 131, 132, 161 |
| BseGI | GGATG | 2 cut(s) | 76, 307 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 84, 363 |
| BseX3I | CGGCCG | 1 cut(s) | 57 |
| BseXI | GCAGC | 1 cut(s) | 182 |
| Bsh1285I | CGRYCG | 1 cut(s) | 60 |
| BshFI | GGCC | 1 cut(s) | 59 |
| BshNI | GGYRCC | 1 cut(s) | 283 |
| BsiEI | CGRYCG | 1 cut(s) | 60 |
| BsiHKCI | CYCGRG | 1 cut(s) | 131 |
| BsiSI | CCGG | 3 cut(s) | 132, 290, 357 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 84, 363 |
| BsnI | GGCC | 1 cut(s) | 59 |
| BsoBI | CYCGRG | 1 cut(s) | 131 |
| Bsp13I | TCCGGA | 1 cut(s) | 289 |
| Bsp143I | GATC | 4 cut(s) | 199, 338, 382, 432 |
| BspACI | CCGC | 3 cut(s) | 56, 88, 279 |
| BspANI | GGCC | 1 cut(s) | 59 |
| BspEI | TCCGGA | 1 cut(s) | 289 |
| BspHI | TCATGA | 1 cut(s) | 435 |
| BspLI | GGNNCC | 1 cut(s) | 285 |
| BspPI | GGATC | 2 cut(s) | 207, 333 |
| BspT107I | GGYRCC | 1 cut(s) | 283 |
| BsrBI | CCGCTC | 1 cut(s) | 279 |
| BssECI | CCNNGG | 3 cut(s) | 131, 132, 161 |
| BssMI | GATC | 4 cut(s) | 199, 338, 382, 432 |
| BssT1I | CCWWGG | 1 cut(s) | 161 |
| BstDEI | CTNAG | 1 cut(s) | 195 |
| BstF5I | GGATG | 2 cut(s) | 76, 307 |
| BstH2I | RGCGCY | 1 cut(s) | 176 |
| BstHHI | GCGC | 1 cut(s) | 175 |
| BstKTI | GATC | 4 cut(s) | 202, 341, 385, 435 |
| BstMBI | GATC | 4 cut(s) | 199, 338, 382, 432 |
| BstMCI | CGRYCG | 1 cut(s) | 60 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 327 |
| BstSCI | CCNGG | 2 cut(s) | 130, 131 |
| BstV1I | GCAGC | 1 cut(s) | 182 |
| BstX2I | RGATCY | 2 cut(s) | 199, 338 |
| BstYI | RGATCY | 2 cut(s) | 199, 338 |
| BstZI | CGGCCG | 1 cut(s) | 57 |
| BsuRI | GGCC | 1 cut(s) | 59 |
| BtsCI | GGATG | 2 cut(s) | 76, 307 |
| CciI | TCATGA | 1 cut(s) | 435 |
| CfoI | GCGC | 1 cut(s) | 175 |
| Cfr9I | CCCGGG | 1 cut(s) | 131 |
| Csp6I | GTAC | 1 cut(s) | 158 |
| CviAII | CATG | 1 cut(s) | 436 |
| CviJI | RGCY | 8 cut(s) | 26, 59, 77, 93, 191, 321, 445, 493 |
| CviKI_1 | RGCY | 8 cut(s) | 26, 59, 77, 93, 191, 321, 445, 493 |
| CviQI | GTAC | 1 cut(s) | 158 |
| DdeI | CTNAG | 1 cut(s) | 195 |
| DpnI | GATC | 4 cut(s) | 201, 340, 384, 434 |
| DpnII | GATC | 4 cut(s) | 199, 338, 382, 432 |
| DraIII | CACNNNGTG | 1 cut(s) | 211 |
| EaeI | YGGCCR | 1 cut(s) | 57 |
| EagI | CGGCCG | 1 cut(s) | 57 |
| EclXI | CGGCCG | 1 cut(s) | 57 |
| Eco130I | CCWWGG | 1 cut(s) | 161 |
| Eco52I | CGGCCG | 1 cut(s) | 57 |
| Eco88I | CYCGRG | 1 cut(s) | 131 |
| EcoT14I | CCWWGG | 1 cut(s) | 161 |
| ErhI | CCWWGG | 1 cut(s) | 161 |
| FaeI | CATG | 1 cut(s) | 439 |
| FatI | CATG | 1 cut(s) | 435 |
| FauI | CCCGC | 2 cut(s) | 81, 272 |
| FauNDI | CATATG | 1 cut(s) | 453 |
| FbaI | TGATCA | 2 cut(s) | 382, 432 |
| Fnu4HI | GCNGC | 3 cut(s) | 12, 57, 171 |
| FokI | GGATG | 2 cut(s) | 83, 314 |
| Fsp4HI | GCNGC | 3 cut(s) | 12, 57, 171 |
| GlaI | GCGC | 1 cut(s) | 174 |
| GluI | GCNGC | 3 cut(s) | 12, 57, 171 |
| HaeII | RGCGCY | 1 cut(s) | 176 |
| HaeIII | GGCC | 1 cut(s) | 59 |
| HapII | CCGG | 3 cut(s) | 132, 290, 357 |
| HhaI | GCGC | 1 cut(s) | 175 |
| Hin1II | CATG | 1 cut(s) | 439 |
| Hin6I | GCGC | 1 cut(s) | 173 |
| HinP1I | GCGC | 1 cut(s) | 173 |
| HinfI | GANTC | 2 cut(s) | 127, 214 |
| HpaII | CCGG | 3 cut(s) | 132, 290, 357 |
| HphI | GGTGA | 2 cut(s) | 136, 197 |
| Hpy188III | TCNNGA | 6 cut(s) | 97, 152, 218, 290, 436, 481 |
| HpyCH4V | TGCA | 2 cut(s) | 256, 392 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 327 |
| HpyF3I | CTNAG | 1 cut(s) | 195 |
| Hsp92II | CATG | 1 cut(s) | 439 |
| HspAI | GCGC | 1 cut(s) | 173 |
| Kpn2I | TCCGGA | 1 cut(s) | 289 |
| Ksp22I | TGATCA | 2 cut(s) | 382, 432 |
| Kzo9I | GATC | 4 cut(s) | 199, 338, 382, 432 |
| LmnI | GCTCC | 3 cut(s) | 9, 276, 335 |
| LpnPI | CCDG | 6 cut(s) | 128, 145, 303, 370, 481, 494 |
| Lsp1109I | GCAGC | 1 cut(s) | 182 |
| MalI | GATC | 4 cut(s) | 201, 340, 384, 434 |
| MbiI | CCGCTC | 1 cut(s) | 279 |
| MboI | GATC | 4 cut(s) | 199, 338, 382, 432 |
| MboII | GAAGA | 3 cut(s) | 194, 238, 257 |
| MflI | RGATCY | 2 cut(s) | 199, 338 |
| MluCI | AATT | 5 cut(s) | 249, 305, 369, 427, 484 |
| MmeI | TCCRAC | 1 cut(s) | 357 |
| MnlI | CCTC | 6 cut(s) | 17, 115, 130, 202, 297, 332 |
| MroI | TCCGGA | 1 cut(s) | 289 |
| MseI | TTAA | 1 cut(s) | 395 |
| MspI | CCGG | 3 cut(s) | 132, 290, 357 |
| MspR9I | CCNGG | 2 cut(s) | 132, 133 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 327 |
| NciI | CCSGG | 2 cut(s) | 132, 133 |
| NdeI | CATATG | 1 cut(s) | 453 |
| NdeII | GATC | 4 cut(s) | 199, 338, 382, 432 |
| NlaIII | CATG | 1 cut(s) | 439 |
| NlaIV | GGNNCC | 1 cut(s) | 285 |
| NmeAIII | GCCGAG | 1 cut(s) | 85 |
| PagI | TCATGA | 1 cut(s) | 435 |
| PfeI | GAWTC | 2 cut(s) | 127, 214 |
| PkrI | GCNGC | 3 cut(s) | 13, 58, 172 |
| PspN4I | GGNNCC | 1 cut(s) | 285 |
| PsuI | RGATCY | 2 cut(s) | 199, 338 |
| RsaI | GTAC | 1 cut(s) | 159 |
| RsaNI | GTAC | 1 cut(s) | 158 |
| SaqAI | TTAA | 1 cut(s) | 395 |
| SatI | GCNGC | 3 cut(s) | 12, 57, 171 |
| Sau3AI | GATC | 4 cut(s) | 199, 338, 382, 432 |
| ScrFI | CCNGG | 2 cut(s) | 132, 133 |
| SetI | ASST | 4 cut(s) | 126, 141, 167, 495 |
| SmaI | CCCGGG | 1 cut(s) | 133 |
| Sse9I | AATT | 5 cut(s) | 249, 305, 369, 427, 484 |
| SsiI | CCGC | 3 cut(s) | 56, 88, 279 |
| StyD4I | CCNGG | 2 cut(s) | 130, 131 |
| StyI | CCWWGG | 1 cut(s) | 161 |
| TaqI | TCGA | 1 cut(s) | 153 |
| TasI | AATT | 5 cut(s) | 249, 305, 369, 427, 484 |
| TauI | GCSGC | 1 cut(s) | 59 |
| TfiI | GAWTC | 2 cut(s) | 127, 214 |
| Tru1I | TTAA | 1 cut(s) | 395 |
| Tru9I | TTAA | 1 cut(s) | 395 |
| TseI | GCWGC | 2 cut(s) | 11, 170 |
| TspDTI | ATGAA | 6 cut(s) | 87, 239, 249, 318, 452, 524 |
| TspMI | CCCGGG | 1 cut(s) | 131 |
| XapI | RAATTY | 2 cut(s) | 427, 484 |
| XmaI | CCCGGG | 1 cut(s) | 131 |