Rmu_ssc0000372.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000372.1
OG0000087
Physical Location & Seq
Reverse (-)
34275 .. 36024
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000372.1_g000010.1.cds

Sequence Viewer

Length: 1422 bp
atgtgggacttgtgccaacaagggtggccttccgtaaacgagctccgcgcggtacaccgggtactgtactcaaggaagcagtcttgtgcgggtacggttaccttcaccgctagggattacgagccactagttaccgacatgcctacctcgatgagcaaaaggtggaggaacaaagtgttcctagctggggggcggtggcagattaaaaataagaagtggcagctgaccgtgaaagcgccgaagaggaaacctcggaaaggcaaggaggagaacagaatggatgatgcccaactgatagatatgctgatgggccagggagaagacgccctccacatcgacgtcgacctagggtcgaagggtaccagtcggtcaattgaagaaacccttctggagatcaccgacgagggatatggtgaacctgaccccgacgcgcccgtgacccacgtcgcgcagccctccatggccaatgttataacgatagatgacactgggatgggaaaagtaccggccccggtgactatctcctctcgttccactgggagcgatgaggctctactccccggtgagaagaagagatcccataggcaccggcatcgaactgataaggaggtgacgtacactggccgggatgtccaaggtactggtgcgaaggggcagaagaaagatcaaccgagaccagagtcgtcaccttctcttggcctgttgtctcccgccattccggtaatccccaagaagcccatcaagcagctgctgagtgagtacggggttgccgatgaaaagttcatatggtccatgcttggggatctgaaggatatcgacctcgaccgggttcgggccaaggataatactccccaggagaatcgccgtcttgcccgggaatcaatgatgcgggcactcttcaatgtgtacgccattgatgccagcgaggaggatactcatatgaaggaggaggttagcaatctctccgggcaggtgaagtatcttcatggcgagaaggccaagctggagaaggagcgggacgcattgagggcgaatctggccgccgctaagcagcggatcgcggggcttgagggcgaagttgctgaggcccgggaagaggtaaaaaacgcctgggactctgagaaaaaggctgcagagtctgccgtctcatggaaggagaaggcagaccacctggaggattaccttcccgcggagaggcacgaggccgtggaggagtacaagtcctcggaagagctcatctctatgctggctgctgcccaagataaggctgtcatcatgaagttcaaggagtggttggcggccggatatttagatgaagctaaattcaggcggggtcttctggagaaaaagaagaaggatcgggaggcggcggccaagtctggtgccagtgggtctcagagtatatgtggcgattggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

473

Amino Acids

52.99

Weight (kDa)

7.17

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
AarI CACCTGC 1 cut(s) 961
AatII GACGTC 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 961
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 3 cut(s) 359, 585, 1382
AccBSI CCGCTC 1 cut(s) 1015
AccI GTMKAC 1 cut(s) 342
AccII CGCG 6 cut(s) 48, 50, 431, 449, 1061, 1190
AclWI GGATC 4 cut(s) 570, 810, 1064, 1365
AcoI YGGCCR 5 cut(s) 462, 622, 1038, 1299, 1371
AcsI RAATTY 1 cut(s) 1322
AcuI CTGAAG 1 cut(s) 827
AcyI GRCGYC 2 cut(s) 324, 339
AgsI TTSAA 3 cut(s) 377, 901, 1285
AhdI GACNNNNNGTC 1 cut(s) 349
AhlI ACTAGT 1 cut(s) 127
AjiI CACGTC 1 cut(s) 445
AjnI CCWGG 4 cut(s) 312, 852, 1109, 1170
AluBI AGCT 7 cut(s) 43, 185, 223, 748, 1003, 1234, 1319
AluI AGCT 7 cut(s) 43, 185, 223, 748, 1003, 1234, 1319
Alw21I GWGCWC 2 cut(s) 45, 1236
Alw26I GTCTC 4 cut(s) 667, 711, 1150, 1398
AlwI GGATC 4 cut(s) 570, 810, 1064, 1365
AlwNI CAGNNNCTG 2 cut(s) 751, 1139
Ama87I CYCGRG 2 cut(s) 873, 1089
ApeKI GCWGC 8 cut(s) 220, 451, 745, 748, 1051, 1130, 1250, 1253
ApoI RAATTY 1 cut(s) 1322
Asp700I GAANNNNTTC 1 cut(s) 384
Asp718I GGTACC 1 cut(s) 359
AspA2I CCTAGG 1 cut(s) 346
AspLEI GCGC 4 cut(s) 50, 238, 433, 451
AspS9I GGNCC 5 cut(s) 310, 508, 789, 834, 1087
AsuHPI GGTGA 8 cut(s) 97, 388, 425, 526, 575, 622, 678, 985
AvaI CYCGRG 2 cut(s) 873, 1089
AvaII GGWCC 1 cut(s) 789
AvrII CCTAGG 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 895
BalI TGGCCA 1 cut(s) 464
BanI GGYRCC 3 cut(s) 359, 585, 1382
BanII GRGCYC 2 cut(s) 45, 1236
BauI CACGAG 1 cut(s) 1199
BbsI GAAGAC 2 cut(s) 327, 1328
Bbv12I GWGCWC 2 cut(s) 45, 1236
BbvCI CCTCAGC 1 cut(s) 1083
BbvI GCAGC 8 cut(s) 232, 463, 735, 757, 1063, 1117, 1237, 1240
BccI CCATC 3 cut(s) 301, 487, 746
BceAI ACGGC 3 cut(s) 849, 1127, 1190
BcgI CGANNNNNNTGC 2 cut(s) 575, 609
BciT130I CCWGG 4 cut(s) 314, 854, 1111, 1172
BciVI GTATCC 1 cut(s) 925
BcoDI GTCTC 4 cut(s) 667, 711, 1150, 1398
BcuI ACTAGT 1 cut(s) 127
BfaI CTAG 4 cut(s) 111, 128, 182, 347
BfmI CTRYAG 1 cut(s) 1131
BfoI RGCGCY 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 961
BfuI GTATCC 1 cut(s) 925
BlnI CCTAGG 1 cut(s) 346
BlpI GCTNAGC 1 cut(s) 1047
Bme18I GGWCC 1 cut(s) 789
BmeRI GACNNNNNGTC 1 cut(s) 349
BmeT110I CYCGRG 2 cut(s) 873, 1089
BmgBI CACGTC 1 cut(s) 445
BmgT120I GGNCC 5 cut(s) 310, 508, 789, 834, 1087
BmiI GGNNCC 4 cut(s) 361, 510, 587, 1384
BmrI ACTGGG 2 cut(s) 498, 546
BmsI GCATC 4 cut(s) 274, 601, 876, 907
BmuI ACTGGG 2 cut(s) 498, 546
BoxI GACNNNNGTC 2 cut(s) 443, 679
BpiI GAAGAC 2 cut(s) 327, 1328
BplI GAGNNNNNCTC 4 cut(s) 235, 267, 1223, 1255
BpmI CTGGAG 4 cut(s) 410, 1025, 1193, 1361
Bpu10I CCTNAGC 1 cut(s) 1083
Bpu1102I GCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 2 cut(s) 55, 1088
BsaHI GRCGYC 2 cut(s) 324, 339
BsaI GGTCTC 2 cut(s) 667, 1398
BsaWI WCCGGW 1 cut(s) 718
BsaXI ACNNNNNCTCC 4 cut(s) 599, 629, 1205, 1235
Bse118I RCCGGY 2 cut(s) 505, 588
Bse1I ACTGG 6 cut(s) 363, 493, 541, 625, 646, 1386
BseBI CCWGG 4 cut(s) 314, 854, 1111, 1172
BseGI GGATG 3 cut(s) 286, 498, 634
BseMII CTCAG 4 cut(s) 743, 1074, 1110, 1409
BseNI ACTGG 6 cut(s) 363, 493, 541, 625, 646, 1386
BseRI GAGGAG 5 cut(s) 281, 514, 941, 962, 1226
BseSI GKGCMC 1 cut(s) 895
BseX3I CGGCCG 1 cut(s) 1299
BseXI GCAGC 8 cut(s) 232, 463, 735, 757, 1063, 1117, 1237, 1240
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 6 cut(s) 48, 50, 431, 449, 1061, 1190
Bsh1285I CGRYCG 2 cut(s) 826, 1302
BshNI GGYRCC 3 cut(s) 359, 585, 1382
BsiEI CGRYCG 2 cut(s) 826, 1302
BsiHKAI GWGCWC 2 cut(s) 45, 1236
BsiHKCI CYCGRG 2 cut(s) 873, 1089
BslFI GGGAC 3 cut(s) 20, 1031, 1127
BsmAI GTCTC 4 cut(s) 667, 711, 1150, 1398
BsmBI CGTCTC 1 cut(s) 1150
BsmFI GGGAC 3 cut(s) 20, 1031, 1127
Bso31I GGTCTC 2 cut(s) 667, 1398
BsoBI CYCGRG 2 cut(s) 873, 1089
Bsp1286I GDGCHC 3 cut(s) 45, 895, 1236
Bsp143I GATC 6 cut(s) 393, 575, 664, 802, 1056, 1357
Bsp1720I GCTNAGC 1 cut(s) 1047
Bsp19I CCATGG 1 cut(s) 459
BspCNI CTCAG 4 cut(s) 744, 1075, 1111, 1408
BspFNI CGCG 6 cut(s) 48, 50, 431, 449, 1061, 1190
BspHI TCATGA 1 cut(s) 1275
BspLI GGNNCC 4 cut(s) 361, 510, 587, 1384
BspMAI CTGCAG 1 cut(s) 1135
BspMI ACCTGC 1 cut(s) 961
BspPI GGATC 4 cut(s) 570, 810, 1064, 1365
BspQI GCTCTTC 1 cut(s) 1224
BspT107I GGYRCC 3 cut(s) 359, 585, 1382
BspTNI GGTCTC 2 cut(s) 667, 1398
BsrBI CCGCTC 1 cut(s) 1015
BsrFI RCCGGY 2 cut(s) 505, 588
BsrI ACTGG 6 cut(s) 363, 493, 541, 625, 646, 1386
BssAI RCCGGY 2 cut(s) 505, 588
BssMI GATC 6 cut(s) 393, 575, 664, 802, 1056, 1357
BssNI GRCGYC 2 cut(s) 324, 339
BssSI CACGAG 1 cut(s) 1199
BssT1I CCWWGG 4 cut(s) 346, 459, 634, 837
Bst2BI CACGAG 1 cut(s) 1199
Bst2UI CCWGG 4 cut(s) 314, 854, 1111, 1172
Bst4CI ACNGT 3 cut(s) 66, 97, 229
Bst6I CTCTTC 5 cut(s) 236, 566, 902, 1089, 1224
BstACI GRCGYC 2 cut(s) 324, 339
BstAPI GCANNNNNTGC 1 cut(s) 1139
BstC8I GCNNGC 3 cut(s) 891, 922, 1248
BstDEI CTNAG 5 cut(s) 752, 1047, 1083, 1119, 1395
BstDSI CCRYGG 3 cut(s) 459, 1188, 1206
BstEII GGTNACC 1 cut(s) 97
BstENI CCTNNNNNAGG 1 cut(s) 255
BstF5I GGATG 3 cut(s) 286, 498, 634
BstFNI CGCG 6 cut(s) 48, 50, 431, 449, 1061, 1190
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 4 cut(s) 50, 238, 433, 451
BstKTI GATC 6 cut(s) 396, 578, 667, 805, 1059, 1360
BstMAI GTCTC 4 cut(s) 667, 711, 1150, 1398
BstMBI GATC 6 cut(s) 393, 575, 664, 802, 1056, 1357
BstMCI CGRYCG 2 cut(s) 826, 1302
BstMWI GCNNNNNNNGC 5 cut(s) 742, 917, 1028, 1037, 1139
BstNI CCWGG 4 cut(s) 314, 854, 1111, 1172
BstNSI RCATGY 1 cut(s) 142
BstPAI GACNNNNGTC 2 cut(s) 443, 679
BstPI GGTNACC 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 1131
BstSLI GKGCMC 1 cut(s) 895
BstUI CGCG 6 cut(s) 48, 50, 431, 449, 1061, 1190
BstV1I GCAGC 8 cut(s) 232, 463, 735, 757, 1063, 1117, 1237, 1240
BstV2I GAAGAC 2 cut(s) 327, 1328
BstX2I RGATCY 2 cut(s) 575, 802
BstXI CCANNNNNNTGG 1 cut(s) 641
BstYI RGATCY 2 cut(s) 575, 802
BstZI CGGCCG 1 cut(s) 1299
BsuI GTATCC 1 cut(s) 925
BtgI CCRYGG 3 cut(s) 459, 1188, 1206
BtgZI GCGATG 1 cut(s) 558
BtrI CACGTC 1 cut(s) 445
BtsCI GGATG 3 cut(s) 286, 498, 634
BtsIMutI CAGTG 4 cut(s) 486, 534, 618, 1393
BveI ACCTGC 1 cut(s) 961
Cac8I GCNNGC 3 cut(s) 891, 922, 1248
CaiI CAGNNNCTG 2 cut(s) 751, 1139
CciI TCATGA 1 cut(s) 1275
CfoI GCGC 4 cut(s) 50, 238, 433, 451
Cfr10I RCCGGY 2 cut(s) 505, 588
Cfr13I GGNCC 5 cut(s) 310, 508, 789, 834, 1087
Cfr42I CCGCGG 1 cut(s) 1191
Cfr9I CCCGGG 2 cut(s) 873, 1089
CseI GACGC 3 cut(s) 332, 437, 1028
CspCI CAANNNNNGTGG 2 cut(s) 5, 40
CviAII CATG 6 cut(s) 139, 460, 793, 986, 1149, 1276
DdeI CTNAG 5 cut(s) 752, 1047, 1083, 1119, 1395
DpnI GATC 6 cut(s) 395, 577, 666, 804, 1058, 1359
DpnII GATC 6 cut(s) 393, 575, 664, 802, 1056, 1357
DriI GACNNNNNGTC 1 cut(s) 349
EaeI YGGCCR 5 cut(s) 462, 622, 1038, 1299, 1371
EagI CGGCCG 1 cut(s) 1299
Eam1104I CTCTTC 5 cut(s) 236, 566, 902, 1089, 1224
Eam1105I GACNNNNNGTC 1 cut(s) 349
EarI CTCTTC 5 cut(s) 236, 566, 902, 1089, 1224
Ecl136II GAGCTC 2 cut(s) 43, 1234
EclXI CGGCCG 1 cut(s) 1299
Eco130I CCWWGG 4 cut(s) 346, 459, 634, 837
Eco24I GRGCYC 2 cut(s) 45, 1236
Eco31I GGTCTC 2 cut(s) 667, 1398
Eco32I GATATC 1 cut(s) 814
Eco47I GGWCC 1 cut(s) 789
Eco52I CGGCCG 1 cut(s) 1299
Eco53kI GAGCTC 2 cut(s) 43, 1234
Eco57I CTGAAG 1 cut(s) 827
Eco88I CYCGRG 2 cut(s) 873, 1089
Eco91I GGTNACC 1 cut(s) 97
EcoICRI GAGCTC 2 cut(s) 43, 1234
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoO65I GGTNACC 1 cut(s) 97
EcoRII CCWGG 4 cut(s) 312, 852, 1109, 1170
EcoRV GATATC 1 cut(s) 814
EcoT14I CCWWGG 4 cut(s) 346, 459, 634, 837
EcoT38I GRGCYC 2 cut(s) 45, 1236
ErhI CCWWGG 4 cut(s) 346, 459, 634, 837
Esp3I CGTCTC 1 cut(s) 1150
FaeI CATG 6 cut(s) 142, 463, 796, 989, 1152, 1279
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 3 cut(s) 20, 1031, 1127
FatI CATG 6 cut(s) 138, 459, 792, 985, 1148, 1275
FauI CCCGC 7 cut(s) 82, 718, 882, 1008, 1054, 1195, 1323
FauNDI CATATG 2 cut(s) 785, 939
FblI GTMKAC 1 cut(s) 342
FokI GGATG 3 cut(s) 293, 505, 641
FriOI GRGCYC 2 cut(s) 45, 1236
FspBI CTAG 4 cut(s) 111, 128, 182, 347
GlaI GCGC 4 cut(s) 49, 237, 432, 450
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 4 cut(s) 410, 1025, 1193, 1361
HaeII RGCGCY 1 cut(s) 239
HgaI GACGC 3 cut(s) 332, 437, 1028
HhaI GCGC 4 cut(s) 50, 238, 433, 451
Hin1I GRCGYC 2 cut(s) 324, 339
Hin1II CATG 6 cut(s) 142, 463, 796, 989, 1152, 1279
Hin6I GCGC 4 cut(s) 48, 236, 431, 449
HinP1I GCGC 4 cut(s) 48, 236, 431, 449
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 6 cut(s) 680, 859, 878, 1033, 1115, 1136
HphI GGTGA 8 cut(s) 97, 388, 425, 526, 575, 622, 678, 985
Hpy166II GTNNAC 6 cut(s) 37, 55, 343, 416, 618, 907
Hpy188I TCNGA 5 cut(s) 255, 807, 1120, 1228, 1398
Hpy188III TCNNGA 4 cut(s) 389, 1276, 1340, 1361
Hpy8I GTNNAC 6 cut(s) 37, 55, 343, 416, 618, 907
Hpy99I CGWCG 5 cut(s) 341, 344, 404, 431, 449
HpyCH4III ACNGT 3 cut(s) 66, 97, 229
HpyCH4IV ACGT 3 cut(s) 339, 444, 614
HpyCH4V TGCA 1 cut(s) 1133
HpyF10VI GCNNNNNNNGC 5 cut(s) 742, 917, 1028, 1037, 1139
HpyF3I CTNAG 5 cut(s) 752, 1047, 1083, 1119, 1395
HpySE526I ACGT 3 cut(s) 339, 444, 614
Hsp92I GRCGYC 2 cut(s) 324, 339
Hsp92II CATG 6 cut(s) 142, 463, 796, 989, 1152, 1279
HspAI GCGC 4 cut(s) 48, 236, 431, 449
KpnI GGTACC 1 cut(s) 363
KspI CCGCGG 1 cut(s) 1191
Kzo9I GATC 6 cut(s) 393, 575, 664, 802, 1056, 1357
LguI GCTCTTC 1 cut(s) 1224
LmnI GCTCC 3 cut(s) 48, 540, 1012
Lsp1109I GCAGC 8 cut(s) 232, 463, 735, 757, 1063, 1117, 1237, 1240
LweI GCATC 4 cut(s) 274, 601, 876, 907
MaeI CTAG 4 cut(s) 111, 128, 182, 347
MaeII ACGT 3 cut(s) 339, 444, 614
MaeIII GTNAC 6 cut(s) 97, 130, 436, 514, 610, 684
MalI GATC 6 cut(s) 395, 577, 666, 804, 1058, 1359
MbiI CCGCTC 1 cut(s) 1015
MboI GATC 6 cut(s) 393, 575, 664, 802, 1056, 1357
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 2 cut(s) 575, 802
MhlI GDGCHC 3 cut(s) 45, 895, 1236
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 2 cut(s) 372, 1322
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 3 cut(s) 689, 1109, 1145
Mox20I TGGCCA 1 cut(s) 464
MroXI GAANNNNTTC 1 cut(s) 384
MscI TGGCCA 1 cut(s) 464
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 2 cut(s) 491, 1241
Msp20I TGGCCA 1 cut(s) 464
MspA1I CMGCKG 4 cut(s) 223, 748, 1054, 1190
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 4 cut(s) 314, 854, 1111, 1172
MvnI CGCG 6 cut(s) 48, 50, 431, 449, 1061, 1190
MwoI GCNNNNNNNGC 5 cut(s) 742, 917, 1028, 1037, 1139
NcoI CCATGG 1 cut(s) 459
NdeI CATATG 2 cut(s) 785, 939
NdeII GATC 6 cut(s) 393, 575, 664, 802, 1056, 1357
NlaIII CATG 6 cut(s) 142, 463, 796, 989, 1152, 1279
NlaIV GGNNCC 4 cut(s) 361, 510, 587, 1384
NmuCI GTSAC 4 cut(s) 436, 514, 610, 684
NspI RCATGY 1 cut(s) 142
PagI TCATGA 1 cut(s) 1275
PaqCI CACCTGC 1 cut(s) 961
PciSI GCTCTTC 1 cut(s) 1224
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 3 cut(s) 859, 878, 1033
PleI GAGTC 3 cut(s) 688, 1109, 1144
PpsI GAGTC 3 cut(s) 688, 1109, 1144
PshAI GACNNNNGTC 2 cut(s) 443, 679
PsiI TTATAA 1 cut(s) 473
Psp124BI GAGCTC 2 cut(s) 45, 1236
Psp6I CCWGG 4 cut(s) 312, 852, 1109, 1170
PspEI GGTNACC 1 cut(s) 97
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 4 cut(s) 312, 852, 1109, 1170
PspN4I GGNNCC 4 cut(s) 361, 510, 587, 1384
PspPI GGNCC 5 cut(s) 310, 508, 789, 834, 1087
PstI CTGCAG 1 cut(s) 1135
PstNI CAGNNNCTG 2 cut(s) 751, 1139
PsuI RGATCY 2 cut(s) 575, 802
PvuII CAGCTG 2 cut(s) 223, 748
RseI CAYNNNNRTG 2 cut(s) 491, 1241
SacI GAGCTC 2 cut(s) 45, 1236
SacII CCGCGG 1 cut(s) 1191
SalI GTCGAC 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 1224
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 6 cut(s) 393, 575, 664, 802, 1056, 1357
Sau96I GGNCC 5 cut(s) 310, 508, 789, 834, 1087
SchI GAGTC 3 cut(s) 689, 1109, 1145
SduI GDGCHC 3 cut(s) 45, 895, 1236
SfaNI GCATC 4 cut(s) 274, 601, 876, 907
SfcI CTRYAG 1 cut(s) 1131
Sfr303I CCGCGG 1 cut(s) 1191
SgrBI CCGCGG 1 cut(s) 1191
SinI GGWCC 1 cut(s) 789
SmaI CCCGGG 2 cut(s) 875, 1091
SmiMI CAYNNNNRTG 2 cut(s) 491, 1241
SmlI CTYRAG 2 cut(s) 70, 1067
SmoI CTYRAG 2 cut(s) 70, 1067
SpeI ACTAGT 1 cut(s) 127
Sse9I AATT 2 cut(s) 372, 1322
SspMI CTAG 4 cut(s) 111, 128, 182, 347
SstI GAGCTC 2 cut(s) 45, 1236
StyI CCWWGG 4 cut(s) 346, 459, 634, 837
TaaI ACNGT 3 cut(s) 66, 97, 229
TaiI ACGT 3 cut(s) 342, 447, 617
TaqI TCGA 7 cut(s) 149, 336, 342, 353, 595, 816, 822
TaqII GACCGA 1 cut(s) 357
TasI AATT 2 cut(s) 372, 1322
TatI WGTACW 2 cut(s) 66, 1215
TauI GCSGC 5 cut(s) 1043, 1046, 1301, 1370, 1373
TfiI GAWTC 3 cut(s) 859, 878, 1033
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 4 cut(s) 493, 541, 625, 1393
TseFI GTSAC 4 cut(s) 436, 514, 610, 684
TseI GCWGC 8 cut(s) 220, 451, 745, 748, 1051, 1130, 1250, 1253
Tsp45I GTSAC 4 cut(s) 436, 514, 610, 684
TspDTI ATGAA 6 cut(s) 772, 789, 956, 974, 1292, 1329
TspGWI ACGGA 1 cut(s) 22
TspMI CCCGGG 2 cut(s) 873, 1089
TspRI CASTG 4 cut(s) 493, 541, 625, 1393
VpaK11BI GGWCC 1 cut(s) 789
XagI CCTNNNNNAGG 1 cut(s) 255
XapI RAATTY 1 cut(s) 1322
XceI RCATGY 1 cut(s) 142
XmaI CCCGGG 2 cut(s) 873, 1089
XmaJI CCTAGG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 4 cut(s) 111, 128, 182, 347
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.