Rmu_sc0010988.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010988.1
OG0000087
Physical Location & Seq
Forward (+)
27405 .. 28671
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010988.1_g000006.1.cds

Sequence Viewer

Length: 1200 bp
ctgattgcagtgaaagcgccaaagaggaaaccccggaaaggcaaagaggaggatagaatggatgatgctcagttgatggatatgctgatgggccagggagaagacgcccttcacatcgatgtcgacctagggtcgaaaggtacgggtcggtccgttgaagagaccctactggagatcacggatgagggatatggggaacctgatcctgacgctcccgtgacacaagtcgtgcagccctctgttgccgacgtcatcacgataaatgataccgggacgggaaaggtacaggtccccgtgtctatttcctctccttctactgggagcgttgaggcattgcttcccggtgagaagaaaagatcccataggcaccggcatcgaagtgataagcaggaggtgacgtataccggccgggatgttcagggattcggtgcgaagaggcagaagaaagatcaccctggacctgggtcgtcgccttcgcttggcttgttgtctcctgcccttccggtaatccccaagaagcttatcaagcagctgttaagtgaatacggggttgccgacgaaaagttcatgcgttccatgctaagtgaccagaaggacattgacctcgaccgggtgcggggcaaggacaatacgcccaaagagaatcgccttctcacccgggaatccatgatgcgggcactcttcaatgtgtacgcgattgacgccagcgaggaagatactcatctgaatgaggaggttagcaatctctccgggcaggtgaagtatctgcatggcgagaacgccaagctggagaaggagcgagactcgttgaaggctgagatggcctcggctaagcagcgaatcgtggagcttgagggtgaagtctctgaggcgcgggaaggggtgaaaagcgctcgggactctgagaaaaaagctgcagagtctgccgtgtcatggaaggagaaggcagactacctggaagatcgtcttccccaggagaagcacgaggccgtggaggagtacaagtcctccgaagagctcattgctatgctaactgctgctcaagacaaggctgtcatcatgaagttcaaaaagtgggtggcggccgggtacttggatgaagcaaaattcaggcggggtcttttggagaaaaagaagaaagatcgggaggtcgtggtcaagtctggtaccggtgggtcccagagtaccggtggcgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

399

Amino Acids

44.11

Weight (kDa)

5.93

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 745
AasI GACNNNNNNGTC 1 cut(s) 1052
AatII GACGTC 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 745
Acc65I GGTACC 1 cut(s) 1166
AccB1I GGYRCC 2 cut(s) 366, 1166
AccI GTMKAC 2 cut(s) 123, 401
AccII CGCG 2 cut(s) 695, 874
AciI CCGC 5 cut(s) 616, 673, 874, 1082, 1114
AclWI GGATC 2 cut(s) 197, 351
AcoI YGGCCR 2 cut(s) 406, 1083
AcsI RAATTY 1 cut(s) 1106
AcyI GRCGYC 3 cut(s) 105, 249, 702
AfaI GTAC 7 cut(s) 142, 285, 692, 1001, 1091, 1168, 1186
AfeI AGCGCT 1 cut(s) 892
AfiI CCNNNNNNNGG 8 cut(s) 38, 317, 461, 479, 610, 616, 672, 933
AgeI ACCGGT 2 cut(s) 1169, 1187
AgsI TTSAA 4 cut(s) 158, 685, 811, 1069
AhdI GACNNNNNGTC 1 cut(s) 130
AjnI CCWGG 5 cut(s) 93, 454, 460, 954, 972
AluBI AGCT 6 cut(s) 520, 532, 787, 850, 914, 1018
AluI AGCT 6 cut(s) 520, 532, 787, 850, 914, 1018
Alw21I GWGCWC 1 cut(s) 1020
Alw26I GTCTC 4 cut(s) 155, 495, 795, 868
AlwI GGATC 2 cut(s) 197, 351
AlwNI CAGNNNCTG 1 cut(s) 923
Ama87I CYCGRG 2 cut(s) 657, 894
Aor51HI AGCGCT 1 cut(s) 892
AoxI GGCC 5 cut(s) 91, 406, 822, 987, 1083
ApeKI GCWGC 5 cut(s) 232, 529, 835, 914, 1037
ApoI RAATTY 1 cut(s) 1106
AsiGI ACCGGT 2 cut(s) 1169, 1187
Asp718I GGTACC 1 cut(s) 1166
AspA2I CCTAGG 1 cut(s) 127
AspLEI GCGC 3 cut(s) 19, 874, 893
AspS9I GGNCC 5 cut(s) 91, 150, 289, 458, 1176
AsuC2I CCSGG 9 cut(s) 34, 271, 342, 410, 611, 658, 659, 751, 1087
AsuHPI GGTGA 7 cut(s) 356, 406, 443, 646, 769, 869, 895
AvaI CYCGRG 2 cut(s) 657, 894
AvaII GGWCC 4 cut(s) 150, 289, 458, 1176
AvrII CCTAGG 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 679
BanI GGYRCC 2 cut(s) 366, 1166
BanII GRGCYC 1 cut(s) 1020
BarI GAAGNNNNNNTAC 4 cut(s) 150, 182, 935, 967
BauI CACGAG 1 cut(s) 983
BbsI GAAGAC 2 cut(s) 108, 959
Bbv12I GWGCWC 1 cut(s) 1020
BbvI GCAGC 5 cut(s) 244, 541, 847, 901, 1024
BccI CCATC 3 cut(s) 70, 82, 814
BceAI ACGGC 2 cut(s) 911, 974
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 5 cut(s) 95, 456, 462, 956, 974
BcnI CCSGG 9 cut(s) 34, 271, 342, 410, 611, 658, 659, 751, 1087
BcoDI GTCTC 4 cut(s) 155, 495, 795, 868
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 915
BfoI RGCGCY 2 cut(s) 20, 894
BfuAI ACCTGC 1 cut(s) 745
BisI GCNGC 6 cut(s) 233, 530, 836, 915, 1038, 1083
BlnI CCTAGG 1 cut(s) 127
BlpI GCTNAGC 1 cut(s) 831
BlsI GCNGC 6 cut(s) 234, 531, 837, 916, 1039, 1084
Bme18I GGWCC 4 cut(s) 150, 289, 458, 1176
BmeRI GACNNNNNGTC 1 cut(s) 130
BmeT110I CYCGRG 2 cut(s) 657, 894
BmgT120I GGNCC 5 cut(s) 91, 150, 289, 458, 1176
BmiI GGNNCC 6 cut(s) 198, 291, 368, 1168, 1177, 1178
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 3 cut(s) 55, 382, 660
BmuI ACTGGG 1 cut(s) 327
BoxI GACNNNNGTC 2 cut(s) 224, 463
BpiI GAAGAC 2 cut(s) 108, 959
BplI GAGNNNNNCTC 4 cut(s) 788, 820, 809, 841
BpmI CTGGAG 2 cut(s) 191, 809
Bpu1102I GCTNAGC 1 cut(s) 831
BpuEI CTTGAG 2 cut(s) 872, 1026
BpuMI CCSGG 9 cut(s) 34, 271, 342, 410, 611, 658, 659, 751, 1087
Bsa29I ATCGAT 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 720
BsaHI GRCGYC 3 cut(s) 105, 249, 702
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 9 cut(s) 32, 94, 127, 454, 461, 657, 825, 972, 990
BsaWI WCCGGW 3 cut(s) 502, 1169, 1187
BsaXI ACNNNNNCTCC 6 cut(s) 383, 413, 989, 992, 1019, 1022
Bsc4I CCNNNNNNNGG 8 cut(s) 38, 317, 461, 479, 610, 616, 672, 933
Bse118I RCCGGY 4 cut(s) 369, 404, 1169, 1187
Bse1I ACTGG 2 cut(s) 174, 322
Bse3DI GCAATG 2 cut(s) 332, 1020
Bse8I GATNNNNATC 1 cut(s) 720
BseBI CCWGG 5 cut(s) 95, 456, 462, 956, 974
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 9 cut(s) 32, 94, 127, 454, 461, 657, 825, 972, 990
BseGI GGATG 4 cut(s) 67, 187, 418, 1102
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 8 cut(s) 38, 317, 461, 479, 610, 616, 672, 933
BseMI GCAATG 2 cut(s) 332, 1020
BseMII CTCAG 4 cut(s) 83, 807, 858, 894
BseNI ACTGG 2 cut(s) 174, 322
BseRI GAGGAG 3 cut(s) 62, 746, 1010
BseSI GKGCMC 1 cut(s) 679
BseX3I CGGCCG 2 cut(s) 406, 1083
BseXI GCAGC 5 cut(s) 244, 541, 847, 901, 1024
BsgI GTGCAG 1 cut(s) 251
Bsh1236I CGCG 2 cut(s) 695, 874
Bsh1285I CGRYCG 3 cut(s) 409, 610, 1086
BshFI GGCC 5 cut(s) 93, 408, 824, 989, 1085
BshNI GGYRCC 2 cut(s) 366, 1166
BshTI ACCGGT 2 cut(s) 1169, 1187
BshVI ATCGAT 1 cut(s) 117
BsiEI CGRYCG 3 cut(s) 409, 610, 1086
BsiHKAI GWGCWC 1 cut(s) 1020
BsiHKCI CYCGRG 2 cut(s) 657, 894
BslFI GGGAC 4 cut(s) 275, 286, 911, 1162
BslI CCNNNNNNNGG 8 cut(s) 38, 317, 461, 479, 610, 616, 672, 933
BsmAI GTCTC 4 cut(s) 155, 495, 795, 868
BsmFI GGGAC 4 cut(s) 275, 286, 911, 1162
BsnI GGCC 5 cut(s) 93, 408, 824, 989, 1085
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 2 cut(s) 657, 894
Bsp1286I GDGCHC 2 cut(s) 679, 1020
Bsp143I GATC 6 cut(s) 174, 202, 356, 448, 961, 1141
Bsp1720I GCTNAGC 1 cut(s) 831
BspACI CCGC 5 cut(s) 616, 673, 874, 1082, 1114
BspANI GGCC 5 cut(s) 93, 408, 824, 989, 1085
BspCNI CTCAG 4 cut(s) 82, 808, 859, 895
BspDI ATCGAT 1 cut(s) 117
BspFNI CGCG 2 cut(s) 695, 874
BspHI TCATGA 1 cut(s) 1059
BspLI GGNNCC 6 cut(s) 198, 291, 368, 1168, 1177, 1178
BspMAI CTGCAG 1 cut(s) 919
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 2 cut(s) 197, 351
BspQI GCTCTTC 1 cut(s) 1008
BspT107I GGYRCC 2 cut(s) 366, 1166
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 332, 1020
BsrFI RCCGGY 4 cut(s) 369, 404, 1169, 1187
BsrI ACTGG 2 cut(s) 174, 322
BssAI RCCGGY 4 cut(s) 369, 404, 1169, 1187
BssECI CCNNGG 9 cut(s) 32, 94, 127, 454, 461, 657, 825, 972, 990
BssMI GATC 6 cut(s) 174, 202, 356, 448, 961, 1141
BssNAI GTATAC 1 cut(s) 402
BssNI GRCGYC 3 cut(s) 105, 249, 702
BssSI CACGAG 1 cut(s) 983
BssT1I CCWWGG 1 cut(s) 127
Bst1107I GTATAC 1 cut(s) 402
Bst2BI CACGAG 1 cut(s) 983
Bst2UI CCWGG 5 cut(s) 95, 456, 462, 956, 974
Bst6I CTCTTC 4 cut(s) 153, 428, 686, 1008
BstACI GRCGYC 3 cut(s) 105, 249, 702
BstAPI GCANNNNNTGC 1 cut(s) 923
BstC8I GCNNGC 2 cut(s) 675, 706
BstDEI CTNAG 6 cut(s) 69, 581, 816, 831, 867, 903
BstDSI CCRYGG 1 cut(s) 990
BstF5I GGATG 4 cut(s) 67, 187, 418, 1102
BstFNI CGCG 2 cut(s) 695, 874
BstH2I RGCGCY 2 cut(s) 20, 894
BstHHI GCGC 3 cut(s) 19, 874, 893
BstKTI GATC 6 cut(s) 177, 205, 359, 451, 964, 1144
BstMAI GTCTC 4 cut(s) 155, 495, 795, 868
BstMBI GATC 6 cut(s) 174, 202, 356, 448, 961, 1141
BstMCI CGRYCG 3 cut(s) 409, 610, 1086
BstMWI GCNNNNNNNGC 6 cut(s) 14, 526, 577, 701, 821, 923
BstNI CCWGG 5 cut(s) 95, 456, 462, 956, 974
BstPAI GACNNNNGTC 2 cut(s) 224, 463
BstSFI CTRYAG 1 cut(s) 915
BstSLI GKGCMC 1 cut(s) 679
BstUI CGCG 2 cut(s) 695, 874
BstV1I GCAGC 5 cut(s) 244, 541, 847, 901, 1024
BstV2I GAAGAC 2 cut(s) 108, 959
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BstZ17I GTATAC 1 cut(s) 402
BstZI CGGCCG 2 cut(s) 406, 1083
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 5 cut(s) 93, 408, 824, 989, 1085
BsuTUI ATCGAT 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 990
BtsCI GGATG 4 cut(s) 67, 187, 418, 1102
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 2 cut(s) 675, 706
CaiI CAGNNNCTG 1 cut(s) 923
CciI TCATGA 1 cut(s) 1059
CfoI GCGC 3 cut(s) 19, 874, 893
Cfr10I RCCGGY 4 cut(s) 369, 404, 1169, 1187
Cfr13I GGNCC 5 cut(s) 91, 150, 289, 458, 1176
Cfr9I CCCGGG 1 cut(s) 657
ClaI ATCGAT 1 cut(s) 117
CpoI CGGWCCG 1 cut(s) 150
CseI GACGC 3 cut(s) 113, 218, 710
Csp6I GTAC 7 cut(s) 141, 284, 691, 1000, 1090, 1167, 1185
CspAI ACCGGT 2 cut(s) 1169, 1187
CspI CGGWCCG 1 cut(s) 150
CviAII CATG 6 cut(s) 568, 577, 667, 770, 933, 1060
CviQI GTAC 7 cut(s) 141, 284, 691, 1000, 1090, 1167, 1185
DdeI CTNAG 6 cut(s) 69, 581, 816, 831, 867, 903
DpnI GATC 6 cut(s) 176, 204, 358, 450, 963, 1143
DpnII GATC 6 cut(s) 174, 202, 356, 448, 961, 1141
DrdI GACNNNNNNGTC 1 cut(s) 1052
DriI GACNNNNNGTC 1 cut(s) 130
DseDI GACNNNNNNGTC 1 cut(s) 1052
EaeI YGGCCR 2 cut(s) 406, 1083
EagI CGGCCG 2 cut(s) 406, 1083
Eam1104I CTCTTC 4 cut(s) 153, 428, 686, 1008
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 4 cut(s) 153, 428, 686, 1008
Ecl136II GAGCTC 1 cut(s) 1018
EclXI CGGCCG 2 cut(s) 406, 1083
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 1020
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 4 cut(s) 150, 289, 458, 1176
Eco47III AGCGCT 1 cut(s) 892
Eco52I CGGCCG 2 cut(s) 406, 1083
Eco53kI GAGCTC 1 cut(s) 1018
Eco88I CYCGRG 2 cut(s) 657, 894
EcoICRI GAGCTC 1 cut(s) 1018
EcoO109I RGGNCCY 2 cut(s) 289, 1176
EcoRII CCWGG 5 cut(s) 93, 454, 460, 954, 972
EcoT14I CCWWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 1020
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 6 cut(s) 571, 580, 670, 773, 936, 1063
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 951, 983
FaqI GGGAC 4 cut(s) 275, 286, 911, 1162
FatI CATG 6 cut(s) 567, 576, 666, 769, 932, 1059
FauI CCCGC 4 cut(s) 609, 666, 867, 1107
FblI GTMKAC 2 cut(s) 123, 401
Fnu4HI GCNGC 6 cut(s) 233, 530, 836, 915, 1038, 1083
FokI GGATG 4 cut(s) 74, 194, 425, 1109
FriOI GRGCYC 1 cut(s) 1020
Fsp4HI GCNGC 6 cut(s) 233, 530, 836, 915, 1038, 1083
FspBI CTAG 1 cut(s) 128
GlaI GCGC 3 cut(s) 18, 873, 892
GluI GCNGC 6 cut(s) 233, 530, 836, 915, 1038, 1083
GsuI CTGGAG 2 cut(s) 191, 809
HaeII RGCGCY 2 cut(s) 20, 894
HaeIII GGCC 5 cut(s) 93, 408, 824, 989, 1085
HgaI GACGC 3 cut(s) 113, 218, 710
HhaI GCGC 3 cut(s) 19, 874, 893
Hin1I GRCGYC 3 cut(s) 105, 249, 702
Hin1II CATG 6 cut(s) 571, 580, 670, 773, 936, 1063
Hin6I GCGC 3 cut(s) 17, 872, 891
HinP1I GCGC 3 cut(s) 17, 872, 891
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 7 cut(s) 423, 643, 662, 803, 840, 899, 920
HphI GGTGA 7 cut(s) 356, 406, 443, 646, 769, 869, 895
Hpy166II GTNNAC 3 cut(s) 124, 402, 691
Hpy188I TCNGA 4 cut(s) 726, 868, 904, 1012
Hpy188III TCNNGA 6 cut(s) 206, 256, 896, 1043, 1060, 1145
Hpy8I GTNNAC 3 cut(s) 124, 402, 691
Hpy99I CGWCG 3 cut(s) 251, 472, 560
HpyCH4IV ACGT 2 cut(s) 249, 398
HpyCH4V TGCA 4 cut(s) 8, 232, 769, 917
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 526, 577, 701, 821, 923
HpyF3I CTNAG 6 cut(s) 69, 581, 816, 831, 867, 903
HpySE526I ACGT 2 cut(s) 249, 398
Hsp92I GRCGYC 3 cut(s) 105, 249, 702
Hsp92II CATG 6 cut(s) 571, 580, 670, 773, 936, 1063
HspAI GCGC 3 cut(s) 17, 872, 891
KflI GGGWCCC 1 cut(s) 1176
KpnI GGTACC 1 cut(s) 1170
Kzo9I GATC 6 cut(s) 174, 202, 356, 448, 961, 1141
LguI GCTCTTC 1 cut(s) 1008
LmnI GCTCC 4 cut(s) 217, 321, 796, 847
Lsp1109I GCAGC 5 cut(s) 244, 541, 847, 901, 1024
LweI GCATC 3 cut(s) 55, 382, 660
MaeI CTAG 1 cut(s) 128
MaeII ACGT 2 cut(s) 249, 398
MaeIII GTNAC 3 cut(s) 217, 394, 584
MalI GATC 6 cut(s) 176, 204, 358, 450, 963, 1143
MboI GATC 6 cut(s) 174, 202, 356, 448, 961, 1141
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 2 cut(s) 679, 1020
MluCI AATT 1 cut(s) 1106
MlyI GAGTC 3 cut(s) 797, 893, 929
MseI TTAA 1 cut(s) 536
MslI CAYNNNNRTG 4 cut(s) 117, 378, 726, 1025
MspA1I CMGCKG 1 cut(s) 532
MvaI CCWGG 5 cut(s) 95, 456, 462, 956, 974
MvnI CGCG 2 cut(s) 695, 874
MwoI GCNNNNNNNGC 6 cut(s) 14, 526, 577, 701, 821, 923
NciI CCSGG 9 cut(s) 34, 271, 342, 410, 611, 658, 659, 751, 1087
NdeII GATC 6 cut(s) 174, 202, 356, 448, 961, 1141
NlaIII CATG 6 cut(s) 571, 580, 670, 773, 936, 1063
NlaIV GGNNCC 6 cut(s) 198, 291, 368, 1168, 1177, 1178
NmeAIII GCCGAG 1 cut(s) 806
NmuCI GTSAC 3 cut(s) 217, 394, 584
PagI TCATGA 1 cut(s) 1059
PaqCI CACCTGC 1 cut(s) 745
PciSI GCTCTTC 1 cut(s) 1008
PcsI WCGNNNNNNNCGW 1 cut(s) 552
PfeI GAWTC 4 cut(s) 423, 643, 662, 840
PinAI ACCGGT 2 cut(s) 1169, 1187
PkrI GCNGC 6 cut(s) 234, 531, 837, 916, 1039, 1084
PleI GAGTC 3 cut(s) 797, 893, 928
PpsI GAGTC 3 cut(s) 797, 893, 928
PpuMI RGGWCCY 2 cut(s) 289, 1176
PshAI GACNNNNGTC 2 cut(s) 224, 463
Psp124BI GAGCTC 1 cut(s) 1020
Psp5II RGGWCCY 2 cut(s) 289, 1176
Psp6I CCWGG 5 cut(s) 93, 454, 460, 954, 972
PspGI CCWGG 5 cut(s) 93, 454, 460, 954, 972
PspN4I GGNNCC 6 cut(s) 198, 291, 368, 1168, 1177, 1178
PspPI GGNCC 5 cut(s) 91, 150, 289, 458, 1176
PspPPI RGGWCCY 2 cut(s) 289, 1176
PstI CTGCAG 1 cut(s) 919
PstNI CAGNNNCTG 1 cut(s) 923
PsuI RGATCY 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 7 cut(s) 142, 285, 692, 1001, 1091, 1168, 1186
RsaNI GTAC 7 cut(s) 141, 284, 691, 1000, 1090, 1167, 1185
RseI CAYNNNNRTG 4 cut(s) 117, 378, 726, 1025
Rsr2I CGGWCCG 1 cut(s) 150
RsrII CGGWCCG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 1020
SalI GTCGAC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 1008
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 6 cut(s) 233, 530, 836, 915, 1038, 1083
Sau3AI GATC 6 cut(s) 174, 202, 356, 448, 961, 1141
Sau96I GGNCC 5 cut(s) 91, 150, 289, 458, 1176
SchI GAGTC 3 cut(s) 797, 893, 929
SduI GDGCHC 2 cut(s) 679, 1020
SfaNI GCATC 3 cut(s) 55, 382, 660
SfcI CTRYAG 1 cut(s) 915
SinI GGWCC 4 cut(s) 150, 289, 458, 1176
SmaI CCCGGG 1 cut(s) 659
SmiMI CAYNNNNRTG 4 cut(s) 117, 378, 726, 1025
SmlI CTYRAG 2 cut(s) 851, 1041
SmoI CTYRAG 2 cut(s) 851, 1041
Sse9I AATT 1 cut(s) 1106
SsiI CCGC 5 cut(s) 616, 673, 874, 1082, 1114
SspMI CTAG 1 cut(s) 128
SstI GAGCTC 1 cut(s) 1020
StyI CCWWGG 1 cut(s) 127
TaiI ACGT 2 cut(s) 252, 401
TaqI TCGA 5 cut(s) 117, 123, 134, 376, 606
TaqII GACCGA 1 cut(s) 138
TasI AATT 1 cut(s) 1106
TatI WGTACW 1 cut(s) 999
TauI GCSGC 1 cut(s) 1085
TfiI GAWTC 4 cut(s) 423, 643, 662, 840
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 3 cut(s) 217, 394, 584
TseI GCWGC 5 cut(s) 232, 529, 835, 914, 1037
Tsp45I GTSAC 3 cut(s) 217, 394, 584
TspDTI ATGAA 3 cut(s) 556, 1076, 1113
TspGWI ACGGA 2 cut(s) 142, 194
TspMI CCCGGG 1 cut(s) 657
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 4 cut(s) 150, 289, 458, 1176
XapI RAATTY 1 cut(s) 1106
XcmI CCANNNNNNNNNTGG 1 cut(s) 1187
XmaI CCCGGG 1 cut(s) 657
XmaJI CCTAGG 1 cut(s) 127
XmiI GTMKAC 2 cut(s) 123, 401
XspI CTAG 1 cut(s) 128
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.