Rmu_sc0002490.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002490.1
OG0000087
Physical Location & Seq
Forward (+)
60201 .. 62991
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002490.1_g000015.1.cds

Sequence Viewer

Length: 2124 bp
atggttgagggctcttcggtttcgacggccctgatgcattggagattgaatttaagagggaaaccaattgttttccctcatattcgtgaaaaagaagctcagaagacttggaagatttgcagcgaggagaaagggagagccaagggagaagtgctaacccttgtgcttctggttccagatatagtgagatttgaggtttctggtactgtagttaggatggaatcagaggccaggggtggggatgcgggatcgtcgttccagtcttctgccaggcaagctgaagtggatatcgaccggtacttaggccgagtagatcaattagcagagaacacgggatcctcaactggggtgttctcggagagtagtgaggagtccgacgagagcgagggtggatctgcggaggccccggtagtcacaatagccattcccgagggcataccgaagcctaggtatacacttgcggatgggaccgtatgcgacgaacccgggagaagtatgacgatgaaggagatcatcgacatgcgacttaagtgggggataccggacgcggtggatcttaggcctctcaaggatggagagatggccacgaatcctgccccggggtgggtggcgctacacgagaataagctctaccaagggttatcgctaccgctgccccggtgcctacagtatctgctgcggatgctgaacctgtccccggggcgactgaccccgaatgccattcgccagatatacagtatgatggctatgtgggacttgtgccaacaagggtggccttccataaacgaattccgcgcgtcctatactctatccgaagtagaaaggaagaggatagctcgggtatatgctgtttggtcagagaaagagaggagctcttatagattcatccggcactctatactttataggctagggctagggtggctccctgtgaaagtgccgaagaggaaaccccggaaaggcaaggaggaggacaggatggatgatgcccaattgatggatatgctgatgggccagggggaagacgcccttcatatcgatgtcgacctagggtcgaaaggtacaagtcggtccattgaagaaacccttctggagatcaccgatgagggatatggtgaacctgaccctgacgctcccgtgacccacgtcgtgcatccctccctggccgacgttatcatgatagatgacaccgggacgggaaaggtaccggcccccatgcctatttcctctcgctccactgggagtgacgaggcattgcttcctggtgagaagaagagatcccataggcaccggcatcgaagtgataaggaggtgacgtacactggccggaatgttcaaggttttggtgcgaagaggcaaaagaaagatcacccgggaccagagtcgtcgccttcgcttggcttgttatctcccgccattccggtaatccccaagaagcccatcaagcagctgctgactgagtacggggttgccgatgaaaagttcgtgcggtccatgcttggtgacctgaaggattttgacctcgaccgggttcgggccaaggataatacgccccaggagaatcgccgtcttgcccgggaatcaatgatgcgggcactcttcaatgtgtacgccattgacgccagtgaggaagatactcatctgaaggaggaggttagcaatctctccgggcaggtgaagtatcttcatggcgagaaggccaagctggagaaggagcgggactcattgaaggctgagatggccgccgctaagcagcggatcgcggagcttgagggtgaagtctctgagccgcgggaggaggtaaaaaacgcccgggactccgagaaaaaagctgcagagtctgccgtgtcatggaaggaaaaggcagaccacctggaggattgccttactgcggagaggcacgaggccgtggaggagtacaagtcctcagaagagctaatcgctatgctggctgctgcccaagataaggctgttatcatgaaattcaaggagtgggtggcggccgggtatttagatgaagctaaattcaggcggggtctcctggagaaaaagaagaaagatcgggaggcggcggccaagtctggtgccggtgggtcccagagtaccggtggcgagcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

707

Amino Acids

78.81

Weight (kDa)

6.05

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1663
Acc36I ACCTGC 1 cut(s) 1663
Acc65I GGTACC 1 cut(s) 1204
AccB1I GGYRCC 4 cut(s) 660, 1204, 1287, 2084
AccB7I CCANNNNNTGG 1 cut(s) 997
AccBSI CCGCTC 2 cut(s) 1717, 2116
AccI GTMKAC 2 cut(s) 452, 1044
AccII CGCG 5 cut(s) 548, 795, 797, 1763, 1792
AclWI GGATC 7 cut(s) 256, 330, 343, 400, 561, 1272, 1766
AcoI YGGCCR 6 cut(s) 582, 1164, 1324, 1740, 2001, 2073
AcsI RAATTY 4 cut(s) 49, 788, 1982, 2024
AcuI CTGAAG 3 cut(s) 300, 1529, 1664
AcyI GRCGYC 2 cut(s) 1026, 1620
AdeI CACNNNGTG 1 cut(s) 1150
AfaI GTAC 9 cut(s) 205, 299, 1063, 1206, 1319, 1463, 1610, 1919, 2104
AflII CTTAAG 1 cut(s) 527
AgeI ACCGGT 2 cut(s) 294, 2105
AgsI TTSAA 6 cut(s) 49, 1079, 1337, 1603, 1729, 1987
AhdI GACNNNNNGTC 1 cut(s) 1051
AjiI CACGTC 1 cut(s) 1147
AjnI CCWGG 8 cut(s) 230, 269, 1014, 1161, 1261, 1554, 1872, 2040
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
Alw21I GWGCWC 1 cut(s) 875
Alw26I GTCTC 2 cut(s) 1786, 2042
AlwI GGATC 7 cut(s) 256, 330, 343, 400, 561, 1272, 1766
AlwNI CAGNNNCTG 3 cut(s) 673, 1453, 1841
Ama87I CYCGRG 8 cut(s) 428, 485, 598, 697, 837, 1372, 1575, 1812
ApeKI GCWGC 9 cut(s) 120, 652, 676, 1447, 1450, 1753, 1832, 1952, 1955
ApoI RAATTY 4 cut(s) 49, 788, 1982, 2024
AsiGI ACCGGT 2 cut(s) 294, 2105
Asp700I GAANNNNTTC 1 cut(s) 1086
Asp718I GGTACC 1 cut(s) 1204
AspA2I CCTAGG 2 cut(s) 446, 1048
AspLEI GCGC 2 cut(s) 613, 797
AsuHPI GGTGA 8 cut(s) 1090, 1127, 1277, 1324, 1361, 1514, 1687, 1787
AvaI CYCGRG 8 cut(s) 428, 485, 598, 697, 837, 1372, 1575, 1812
AvaII GGWCC 5 cut(s) 468, 1071, 1376, 1491, 2094
AvrII CCTAGG 2 cut(s) 446, 1048
BaeGI GKGCMC 1 cut(s) 1597
BaeI ACNNNNGTAYC 2 cut(s) 195, 228
BalI TGGCCA 1 cut(s) 584
BamHI GGATCC 1 cut(s) 335
BanI GGYRCC 4 cut(s) 660, 1204, 1287, 2084
BanII GRGCYC 2 cut(s) 14, 875
BauI CACGAG 2 cut(s) 617, 1901
BbsI GAAGAC 3 cut(s) 110, 255, 1029
Bbv12I GWGCWC 1 cut(s) 875
BbvI GCAGC 9 cut(s) 132, 639, 663, 1437, 1459, 1765, 1819, 1939, 1942
BceAI ACGGC 4 cut(s) 42, 1551, 1829, 1892
BcgI CGANNNNNNTGC 2 cut(s) 1277, 1311
BciT130I CCWGG 8 cut(s) 232, 271, 1016, 1163, 1263, 1556, 1874, 2042
BciVI GTATCC 1 cut(s) 531
BcoDI GTCTC 2 cut(s) 1786, 2042
BfaI CTAG 4 cut(s) 447, 911, 917, 1049
BfmI CTRYAG 3 cut(s) 207, 665, 1833
BfoI RGCGCY 1 cut(s) 614
BfrI CTTAAG 1 cut(s) 527
BfuAI ACCTGC 1 cut(s) 1663
BfuI GTATCC 1 cut(s) 531
BlnI CCTAGG 2 cut(s) 446, 1048
BlpI GCTNAGC 1 cut(s) 1749
Bme18I GGWCC 5 cut(s) 468, 1071, 1376, 1491, 2094
BmeRI GACNNNNNGTC 1 cut(s) 1051
BmeT110I CYCGRG 8 cut(s) 428, 485, 598, 697, 837, 1372, 1575, 1812
BmgBI CACGTC 1 cut(s) 1147
BmrI ACTGGG 2 cut(s) 354, 1248
BmsI GCATC 7 cut(s) 24, 232, 672, 976, 1162, 1303, 1578
BmuI ACTGGG 2 cut(s) 354, 1248
BoxI GACNNNNGTC 2 cut(s) 1145, 1381
BpiI GAAGAC 3 cut(s) 110, 255, 1029
BplI GAGNNNNNCTC 6 cut(s) 820, 852, 857, 889, 1706, 1738
BpmI CTGGAG 4 cut(s) 1112, 1727, 1895, 2063
Bpu1102I GCTNAGC 1 cut(s) 1749
BpuEI CTTGAG 2 cut(s) 551, 1790
Bsa29I ATCGAT 1 cut(s) 1038
BsaBI GATNNNNATC 1 cut(s) 1638
BsaHI GRCGYC 2 cut(s) 1026, 1620
BsaI GGTCTC 1 cut(s) 2042
BsaWI WCCGGW 4 cut(s) 294, 541, 1420, 2105
BsaXI ACNNNNNCTCC 4 cut(s) 1301, 1331, 1907, 1937
Bse118I RCCGGY 5 cut(s) 294, 1207, 1290, 2087, 2105
Bse1I ACTGG 5 cut(s) 259, 349, 1243, 1327, 1623
Bse3DI GCAATG 1 cut(s) 1253
Bse8I GATNNNNATC 1 cut(s) 1638
BseBI CCWGG 8 cut(s) 232, 271, 1016, 1163, 1263, 1556, 1874, 2042
BseCI ATCGAT 1 cut(s) 1038
BseGI GGATG 9 cut(s) 222, 247, 469, 577, 687, 885, 984, 988, 1153
BseJI GATNNNNATC 1 cut(s) 1638
BseMI GCAATG 1 cut(s) 1253
BseMII CTCAG 5 cut(s) 113, 1449, 1725, 1776, 1941
BseNI ACTGG 5 cut(s) 259, 349, 1243, 1327, 1623
BseRI GAGGAG 7 cut(s) 140, 383, 883, 983, 1664, 1811, 1928
BseSI GKGCMC 1 cut(s) 1597
BseX3I CGGCCG 1 cut(s) 2001
BseXI GCAGC 9 cut(s) 132, 639, 663, 1437, 1459, 1765, 1819, 1939, 1942
Bsh1236I CGCG 5 cut(s) 548, 795, 797, 1763, 1792
Bsh1285I CGRYCG 3 cut(s) 295, 1528, 2004
BshNI GGYRCC 4 cut(s) 660, 1204, 1287, 2084
BshTI ACCGGT 2 cut(s) 294, 2105
BshVI ATCGAT 1 cut(s) 1038
BsiEI CGRYCG 3 cut(s) 295, 1528, 2004
BsiHKAI GWGCWC 1 cut(s) 875
BsiHKCI CYCGRG 8 cut(s) 428, 485, 598, 697, 837, 1372, 1575, 1812
BslFI GGGAC 8 cut(s) 481, 679, 767, 1207, 1389, 1733, 1829, 2080
BsmAI GTCTC 2 cut(s) 1786, 2042
BsmFI GGGAC 8 cut(s) 481, 679, 767, 1207, 1389, 1733, 1829, 2080
BsmI GAATGC 1 cut(s) 721
Bso31I GGTCTC 1 cut(s) 2042
BsoBI CYCGRG 8 cut(s) 428, 485, 598, 697, 837, 1372, 1575, 1812
Bsp1286I GDGCHC 3 cut(s) 14, 875, 1597
Bsp1720I GCTNAGC 1 cut(s) 1749
BspCNI CTCAG 5 cut(s) 112, 1450, 1726, 1777, 1940
BspDI ATCGAT 1 cut(s) 1038
BspFNI CGCG 5 cut(s) 548, 795, 797, 1763, 1792
BspHI TCATGA 2 cut(s) 1176, 1977
BspMAI CTGCAG 1 cut(s) 1837
BspMI ACCTGC 1 cut(s) 1663
BspPI GGATC 7 cut(s) 256, 330, 343, 400, 561, 1272, 1766
BspQI GCTCTTC 2 cut(s) 19, 1926
BspT107I GGYRCC 4 cut(s) 660, 1204, 1287, 2084
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 2042
BsrBI CCGCTC 2 cut(s) 1717, 2116
BsrDI GCAATG 1 cut(s) 1253
BsrFI RCCGGY 5 cut(s) 294, 1207, 1290, 2087, 2105
BsrI ACTGG 5 cut(s) 259, 349, 1243, 1327, 1623
BssAI RCCGGY 5 cut(s) 294, 1207, 1290, 2087, 2105
BssNAI GTATAC 1 cut(s) 453
BssNI GRCGYC 2 cut(s) 1026, 1620
BssSI CACGAG 2 cut(s) 617, 1901
BssT1I CCWWGG 5 cut(s) 141, 446, 634, 1048, 1539
Bst1107I GTATAC 1 cut(s) 453
Bst2BI CACGAG 2 cut(s) 617, 1901
Bst2UI CCWGG 8 cut(s) 232, 271, 1016, 1163, 1263, 1556, 1874, 2042
Bst4CI ACNGT 4 cut(s) 208, 472, 669, 737
Bst6I CTCTTC 7 cut(s) 19, 821, 938, 1268, 1346, 1604, 1926
BstACI GRCGYC 2 cut(s) 1026, 1620
BstAFI CTTAAG 1 cut(s) 527
BstAPI GCANNNNNTGC 1 cut(s) 1841
BstC8I GCNNGC 4 cut(s) 276, 1593, 1950, 2114
BstDEI CTNAG 8 cut(s) 99, 301, 557, 1458, 1734, 1749, 1785, 1927
BstDSI CCRYGG 2 cut(s) 1790, 1908
BstEII GGTNACC 1 cut(s) 1502
BstF5I GGATG 9 cut(s) 222, 247, 469, 577, 687, 885, 984, 988, 1153
BstFNI CGCG 5 cut(s) 548, 795, 797, 1763, 1792
BstH2I RGCGCY 1 cut(s) 614
BstHHI GCGC 2 cut(s) 613, 797
BstMAI GTCTC 2 cut(s) 1786, 2042
BstMCI CGRYCG 3 cut(s) 295, 1528, 2004
BstNI CCWGG 8 cut(s) 232, 271, 1016, 1163, 1263, 1556, 1874, 2042
BstNSI RCATGY 1 cut(s) 523
BstPAI GACNNNNGTC 2 cut(s) 1145, 1381
BstPI GGTNACC 1 cut(s) 1502
BstSFI CTRYAG 3 cut(s) 207, 665, 1833
BstSLI GKGCMC 1 cut(s) 1597
BstUI CGCG 5 cut(s) 548, 795, 797, 1763, 1792
BstV1I GCAGC 9 cut(s) 132, 639, 663, 1437, 1459, 1765, 1819, 1939, 1942
BstV2I GAAGAC 3 cut(s) 110, 255, 1029
BstX2I RGATCY 4 cut(s) 335, 392, 553, 1277
BstYI RGATCY 4 cut(s) 335, 392, 553, 1277
BstZ17I GTATAC 1 cut(s) 453
BstZI CGGCCG 1 cut(s) 2001
Bsu15I ATCGAT 1 cut(s) 1038
BsuI GTATCC 1 cut(s) 531
BsuTUI ATCGAT 1 cut(s) 1038
BtgI CCRYGG 2 cut(s) 1790, 1908
BtrI CACGTC 1 cut(s) 1147
BtsCI GGATG 9 cut(s) 222, 247, 469, 577, 687, 885, 984, 988, 1153
BtsIMutI CAGTG 3 cut(s) 1236, 1320, 1630
BveI ACCTGC 1 cut(s) 1663
Cac8I GCNNGC 4 cut(s) 276, 1593, 1950, 2114
CaiI CAGNNNCTG 3 cut(s) 673, 1453, 1841
CciI TCATGA 2 cut(s) 1176, 1977
CfoI GCGC 2 cut(s) 613, 797
Cfr10I RCCGGY 5 cut(s) 294, 1207, 1290, 2087, 2105
Cfr42I CCGCGG 1 cut(s) 1793
Cfr9I CCCGGG 6 cut(s) 485, 598, 697, 1372, 1575, 1812
ClaI ATCGAT 1 cut(s) 1038
CseI GACGC 5 cut(s) 554, 786, 1034, 1139, 1628
Csp6I GTAC 9 cut(s) 204, 298, 1062, 1205, 1318, 1462, 1609, 1918, 2103
CspAI ACCGGT 2 cut(s) 294, 2105
CspCI CAANNNNNGTGG 2 cut(s) 752, 787
CviAII CATG 7 cut(s) 520, 1177, 1216, 1495, 1688, 1851, 1978
CviQI GTAC 9 cut(s) 204, 298, 1062, 1205, 1318, 1462, 1609, 1918, 2103
DdeI CTNAG 8 cut(s) 99, 301, 557, 1458, 1734, 1749, 1785, 1927
DraIII CACNNNGTG 1 cut(s) 1150
DriI GACNNNNNGTC 1 cut(s) 1051
EaeI YGGCCR 6 cut(s) 582, 1164, 1324, 1740, 2001, 2073
EagI CGGCCG 1 cut(s) 2001
Eam1104I CTCTTC 7 cut(s) 19, 821, 938, 1268, 1346, 1604, 1926
Eam1105I GACNNNNNGTC 1 cut(s) 1051
EarI CTCTTC 7 cut(s) 19, 821, 938, 1268, 1346, 1604, 1926
Ecl136II GAGCTC 1 cut(s) 873
EclXI CGGCCG 1 cut(s) 2001
Eco130I CCWWGG 5 cut(s) 141, 446, 634, 1048, 1539
Eco147I AGGCCT 1 cut(s) 562
Eco24I GRGCYC 2 cut(s) 14, 875
Eco31I GGTCTC 1 cut(s) 2042
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 5 cut(s) 468, 1071, 1376, 1491, 2094
Eco52I CGGCCG 1 cut(s) 2001
Eco53kI GAGCTC 1 cut(s) 873
Eco57I CTGAAG 3 cut(s) 300, 1529, 1664
Eco88I CYCGRG 8 cut(s) 428, 485, 598, 697, 837, 1372, 1575, 1812
Eco91I GGTNACC 1 cut(s) 1502
EcoICRI GAGCTC 1 cut(s) 873
EcoO109I RGGNCCY 2 cut(s) 403, 2094
EcoO65I GGTNACC 1 cut(s) 1502
EcoRI GAATTC 1 cut(s) 788
EcoRII CCWGG 8 cut(s) 230, 269, 1014, 1161, 1261, 1554, 1872, 2040
EcoRV GATATC 1 cut(s) 289
EcoT14I CCWWGG 5 cut(s) 141, 446, 634, 1048, 1539
EcoT22I ATGCAT 1 cut(s) 39
EcoT38I GRGCYC 2 cut(s) 14, 875
ErhI CCWWGG 5 cut(s) 141, 446, 634, 1048, 1539
FaeI CATG 7 cut(s) 523, 1180, 1219, 1498, 1691, 1854, 1981
FalI AAGNNNNNCTT 4 cut(s) 1014, 1046, 1071, 1103
FaqI GGGAC 8 cut(s) 481, 679, 767, 1207, 1389, 1733, 1829, 2080
FatI CATG 7 cut(s) 519, 1176, 1215, 1494, 1687, 1850, 1977
FauI CCCGC 6 cut(s) 238, 1420, 1584, 1710, 1785, 2025
FblI GTMKAC 2 cut(s) 452, 1044
FokI GGATG 9 cut(s) 229, 254, 476, 584, 694, 872, 991, 995, 1140
FriOI GRGCYC 2 cut(s) 14, 875
FspBI CTAG 4 cut(s) 447, 911, 917, 1049
GlaI GCGC 2 cut(s) 612, 796
GsuI CTGGAG 4 cut(s) 1112, 1727, 1895, 2063
HaeII RGCGCY 1 cut(s) 614
HgaI GACGC 5 cut(s) 554, 786, 1034, 1139, 1628
HhaI GCGC 2 cut(s) 613, 797
Hin1I GRCGYC 2 cut(s) 1026, 1620
Hin1II CATG 7 cut(s) 523, 1180, 1219, 1498, 1691, 1854, 1981
Hin6I GCGC 2 cut(s) 611, 795
HinP1I GCGC 2 cut(s) 611, 795
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HphI GGTGA 8 cut(s) 1090, 1127, 1277, 1324, 1361, 1514, 1687, 1787
Hpy166II GTNNAC 5 cut(s) 453, 1045, 1118, 1320, 1609
Hpy188III TCNNGA 7 cut(s) 86, 176, 428, 1091, 1177, 1978, 2063
Hpy8I GTNNAC 5 cut(s) 453, 1045, 1118, 1320, 1609
Hpy99I CGWCG 7 cut(s) 28, 256, 380, 482, 1151, 1172, 1390
HpyCH4III ACNGT 4 cut(s) 208, 472, 669, 737
HpyCH4IV ACGT 3 cut(s) 1146, 1170, 1316
HpyCH4V TGCA 4 cut(s) 37, 120, 1153, 1835
HpyF3I CTNAG 8 cut(s) 99, 301, 557, 1458, 1734, 1749, 1785, 1927
HpySE526I ACGT 3 cut(s) 1146, 1170, 1316
Hsp92I GRCGYC 2 cut(s) 1026, 1620
Hsp92II CATG 7 cut(s) 523, 1180, 1219, 1498, 1691, 1854, 1981
HspAI GCGC 2 cut(s) 611, 795
KflI GGGWCCC 1 cut(s) 2094
KpnI GGTACC 1 cut(s) 1208
KspI CCGCGG 1 cut(s) 1793
LguI GCTCTTC 2 cut(s) 19, 1926
LmnI GCTCC 6 cut(s) 870, 930, 1138, 1238, 1714, 1765
Lsp1109I GCAGC 9 cut(s) 132, 639, 663, 1437, 1459, 1765, 1819, 1939, 1942
LweI GCATC 7 cut(s) 24, 232, 672, 976, 1162, 1303, 1578
MaeI CTAG 4 cut(s) 447, 911, 917, 1049
MaeII ACGT 3 cut(s) 1146, 1170, 1316
MaeIII GTNAC 5 cut(s) 412, 1138, 1244, 1312, 1502
MbiI CCGCTC 2 cut(s) 1717, 2116
MfeI CAATTG 2 cut(s) 66, 992
MflI RGATCY 4 cut(s) 335, 392, 553, 1277
MhlI GDGCHC 3 cut(s) 14, 875, 1597
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 7 cut(s) 49, 66, 317, 788, 992, 1982, 2024
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 5 cut(s) 380, 1391, 1715, 1811, 1847
MmeI TCCRAC 1 cut(s) 399
Mox20I TGGCCA 1 cut(s) 584
Mph1103I ATGCAT 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 1086
MscI TGGCCA 1 cut(s) 584
MseI TTAA 2 cut(s) 53, 528
MslI CAYNNNNRTG 4 cut(s) 84, 518, 1038, 1299
Msp20I TGGCCA 1 cut(s) 584
MspA1I CMGCKG 4 cut(s) 652, 1450, 1756, 1792
MspCI CTTAAG 1 cut(s) 527
MunI CAATTG 2 cut(s) 66, 992
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 8 cut(s) 232, 271, 1016, 1163, 1263, 1556, 1874, 2042
MvnI CGCG 5 cut(s) 548, 795, 797, 1763, 1792
NlaIII CATG 7 cut(s) 523, 1180, 1219, 1498, 1691, 1854, 1981
NmeAIII GCCGAG 1 cut(s) 332
NmuCI GTSAC 5 cut(s) 412, 1138, 1244, 1312, 1502
NsiI ATGCAT 1 cut(s) 39
NspI RCATGY 1 cut(s) 523
PagI TCATGA 2 cut(s) 1176, 1977
PaqCI CACCTGC 1 cut(s) 1663
PceI AGGCCT 1 cut(s) 562
PciSI GCTCTTC 2 cut(s) 19, 1926
PcsI WCGNNNNNNNCGW 1 cut(s) 1470
PctI GAATGC 1 cut(s) 721
PdmI GAANNNNTTC 1 cut(s) 1086
PfeI GAWTC 5 cut(s) 221, 589, 882, 1561, 1580
PflMI CCANNNNNTGG 1 cut(s) 997
PfoI TCCNGGA 1 cut(s) 2040
PinAI ACCGGT 2 cut(s) 294, 2105
PleI GAGTC 5 cut(s) 379, 1390, 1715, 1811, 1846
PpsI GAGTC 5 cut(s) 379, 1390, 1715, 1811, 1846
PpuMI RGGWCCY 1 cut(s) 2094
PshAI GACNNNNGTC 2 cut(s) 1145, 1381
Psp124BI GAGCTC 1 cut(s) 875
Psp5II RGGWCCY 1 cut(s) 2094
Psp6I CCWGG 8 cut(s) 230, 269, 1014, 1161, 1261, 1554, 1872, 2040
PspEI GGTNACC 1 cut(s) 1502
PspGI CCWGG 8 cut(s) 230, 269, 1014, 1161, 1261, 1554, 1872, 2040
PspPPI RGGWCCY 1 cut(s) 2094
PstI CTGCAG 1 cut(s) 1837
PstNI CAGNNNCTG 3 cut(s) 673, 1453, 1841
PsuI RGATCY 4 cut(s) 335, 392, 553, 1277
PvuII CAGCTG 1 cut(s) 1450
RsaI GTAC 9 cut(s) 205, 299, 1063, 1206, 1319, 1463, 1610, 1919, 2104
RsaNI GTAC 9 cut(s) 204, 298, 1062, 1205, 1318, 1462, 1609, 1918, 2103
RseI CAYNNNNRTG 4 cut(s) 84, 518, 1038, 1299
SacI GAGCTC 1 cut(s) 875
SacII CCGCGG 1 cut(s) 1793
SalI GTCGAC 1 cut(s) 1043
SapI GCTCTTC 2 cut(s) 19, 1926
SaqAI TTAA 2 cut(s) 53, 528
SchI GAGTC 5 cut(s) 380, 1391, 1715, 1811, 1847
SduI GDGCHC 3 cut(s) 14, 875, 1597
SfaNI GCATC 7 cut(s) 24, 232, 672, 976, 1162, 1303, 1578
SfcI CTRYAG 3 cut(s) 207, 665, 1833
Sfr303I CCGCGG 1 cut(s) 1793
SgrBI CCGCGG 1 cut(s) 1793
SinI GGWCC 5 cut(s) 468, 1071, 1376, 1491, 2094
SmaI CCCGGG 6 cut(s) 487, 600, 699, 1374, 1577, 1814
SmiMI CAYNNNNRTG 4 cut(s) 84, 518, 1038, 1299
SmlI CTYRAG 3 cut(s) 527, 566, 1769
SmoI CTYRAG 3 cut(s) 527, 566, 1769
Sse9I AATT 7 cut(s) 49, 66, 317, 788, 992, 1982, 2024
SseBI AGGCCT 1 cut(s) 562
SspMI CTAG 4 cut(s) 447, 911, 917, 1049
SstI GAGCTC 1 cut(s) 875
StuI AGGCCT 1 cut(s) 562
StyI CCWWGG 5 cut(s) 141, 446, 634, 1048, 1539
TaaI ACNGT 4 cut(s) 208, 472, 669, 737
TaiI ACGT 3 cut(s) 1149, 1173, 1319
TaqI TCGA 8 cut(s) 23, 291, 516, 1038, 1044, 1055, 1297, 1524
TaqII GACCGA 1 cut(s) 1059
TasI AATT 7 cut(s) 49, 66, 317, 788, 992, 1982, 2024
TatI WGTACW 1 cut(s) 1917
TauI GCSGC 6 cut(s) 1745, 1748, 1792, 2003, 2072, 2075
TfiI GAWTC 5 cut(s) 221, 589, 882, 1561, 1580
Tru1I TTAA 2 cut(s) 53, 528
Tru9I TTAA 2 cut(s) 53, 528
TscAI CASTG 3 cut(s) 1243, 1327, 1630
TseFI GTSAC 5 cut(s) 412, 1138, 1244, 1312, 1502
TseI GCWGC 9 cut(s) 120, 652, 676, 1447, 1450, 1753, 1832, 1952, 1955
Tsp45I GTSAC 5 cut(s) 412, 1138, 1244, 1312, 1502
TspDTI ATGAA 7 cut(s) 518, 874, 1022, 1491, 1676, 1994, 2031
TspMI CCCGGG 6 cut(s) 485, 598, 697, 1372, 1575, 1812
TspRI CASTG 3 cut(s) 1243, 1327, 1630
Van91I CCANNNNNTGG 1 cut(s) 997
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 5 cut(s) 468, 1071, 1376, 1491, 2094
XapI RAATTY 4 cut(s) 49, 788, 1982, 2024
XceI RCATGY 1 cut(s) 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 2105
XmaI CCCGGG 6 cut(s) 485, 598, 697, 1372, 1575, 1812
XmaJI CCTAGG 2 cut(s) 446, 1048
XmiI GTMKAC 2 cut(s) 452, 1044
XmnI GAANNNNTTC 1 cut(s) 1086
XspI CTAG 4 cut(s) 447, 911, 917, 1049
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.