Rmu_sc0009641.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009641.1
OG0000087
Physical Location & Seq
Forward (+)
21 .. 1374
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009641.1_g000001.1.cds

Sequence Viewer

Length: 1158 bp
atgctgatgagccagggagaagatgccctgcacatcgacgtcgacctagggtcgaaaggcatgagtcggtccattgaagagacccttttggagataactgatgagggatacggtgaacctgatcacgacgctcctgtggcccaccccgtgcagccctccatggccgatgtcattacgatagatgacaccggaatgggaaaagtaccggcctcagtgcctatttcttctcgttctactgggagcgatgaggcgttactccccggtgagaagaagagatcccacaagcaccggcatcgaactgataaggaggtgacgtacactggccaggatgtccagggtactggtgcgaagaggcaaaagaaagatcacccgggatcagggctgtcaccttcccttggcctgttatctcccgccgttccggatatcgacctcgaccgggttcgagccaaagataatactccccaggagaatcgccgtctcgcccgggaatcgatgatgcgggcactctttaatgtgtacgccatcgacgccagcgaggaggatactcacctgaaggaggaggttagcaatctttccgggcaggtgaagtaccttcatggcgagaaggccaagctggagaaggagcgggactcgttgaaggctgagatggccgcctctaagcagcggattgctgagcttgagggcgaggttgctgaggcgagggaggaggtgaagtaccttcatggcgagaaggccaagctggagaaggagcaggactcgttgaaggctgagatggccgcctctaagctgcggattgttgagcttgagggcgaggttgctgaggcgagggaggaggtgaagaatgcccgggactccgagaagaaggctgcagagtctgccgtctcatggaaggagaaagcagactctctggaggatcgcctacccgcggagaggcacgaggccgtggaggagtacaagtcctcagatgagcttatctccatgctggctgctgcccaagataaggctgtcatcatgaagtttaaggagtgggtggcggccgggtatctagatgaggccaaattcaggcggggtctcctggagaaaaggaaaaaagagcgggaggcggcgggcaagtctggtgccggcgggtctcagagtaccgatggggatcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

42.44

Weight (kDa)

5.34

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 571
AatII GACGTC 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 571
AccB1I GGYRCC 1 cut(s) 1118
AccBSI CCGCTC 2 cut(s) 625, 1096
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 926
AccIII TCCGGA 1 cut(s) 418
AclWI GGATC 4 cut(s) 270, 382, 921, 1155
AcoI YGGCCR 5 cut(s) 162, 322, 648, 774, 1035
AcsI RAATTY 1 cut(s) 1058
AcuI CTGAAG 1 cut(s) 572
AcyI GRCGYC 2 cut(s) 39, 528
AdeI CACNNNGTG 1 cut(s) 148
AfaI GTAC 8 cut(s) 204, 317, 340, 518, 590, 716, 953, 1138
AfiI CCNNNNNNNGG 9 cut(s) 377, 395, 436, 556, 885, 925, 930, 1000, 1062
AgsI TTSAA 3 cut(s) 77, 637, 763
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 5 cut(s) 12, 324, 333, 462, 1074
AluBI AGCT 6 cut(s) 613, 676, 739, 787, 802, 970
AluI AGCT 6 cut(s) 613, 676, 739, 787, 802, 970
Alw26I GTCTC 5 cut(s) 74, 482, 886, 1076, 1134
AlwI GGATC 4 cut(s) 270, 382, 921, 1155
AlwNI CAGNNNCTG 1 cut(s) 875
Ama87I CYCGRG 3 cut(s) 370, 483, 846
Aor13HI TCCGGA 1 cut(s) 418
ApeKI GCWGC 6 cut(s) 151, 661, 787, 866, 986, 989
ApoI RAATTY 1 cut(s) 1058
AspA2I CCTAGG 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 69, 139
AsuHPI GGTGA 9 cut(s) 125, 275, 322, 359, 378, 539, 595, 721, 847
AvaI CYCGRG 3 cut(s) 370, 483, 846
AvaII GGWCC 1 cut(s) 69
AvrII CCTAGG 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 505
BalI TGGCCA 1 cut(s) 324
BanI GGYRCC 1 cut(s) 1118
BauI CACGAG 1 cut(s) 935
BbvCI CCTCAGC 2 cut(s) 693, 819
BbvI GCAGC 6 cut(s) 163, 673, 774, 853, 973, 976
BccI CCATC 4 cut(s) 530, 640, 766, 1136
BceAI ACGGC 4 cut(s) 398, 459, 863, 926
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 5 cut(s) 14, 326, 335, 464, 1076
BciVI GTATCC 2 cut(s) 101, 535
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 5 cut(s) 74, 482, 886, 1076, 1134
BfaI CTAG 2 cut(s) 47, 1046
BfmI CTRYAG 1 cut(s) 867
BfuAI ACCTGC 1 cut(s) 571
BfuI GTATCC 2 cut(s) 101, 535
BlnI CCTAGG 1 cut(s) 46
BlpI GCTNAGC 1 cut(s) 672
Bme18I GGWCC 1 cut(s) 69
BmeRI GACNNNNNGTC 1 cut(s) 49
BmeT110I CYCGRG 3 cut(s) 370, 483, 846
BmgT120I GGNCC 2 cut(s) 69, 139
BmiI GGNNCC 1 cut(s) 1120
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 3 cut(s) 13, 301, 486
BmuI ACTGGG 1 cut(s) 246
BplI GAGNNNNNCTC 6 cut(s) 614, 646, 740, 772, 959, 991
BpmI CTGGAG 4 cut(s) 635, 761, 929, 1097
Bpu10I CCTNAGC 2 cut(s) 693, 819
Bpu1102I GCTNAGC 1 cut(s) 672
BpuEI CTTGAG 2 cut(s) 698, 824
Bsa29I ATCGAT 1 cut(s) 491
BsaBI GATNNNNATC 1 cut(s) 1146
BsaHI GRCGYC 2 cut(s) 39, 528
BsaI GGTCTC 3 cut(s) 74, 1076, 1134
BsaWI WCCGGW 2 cut(s) 188, 418
BsaXI ACNNNNNCTCC 6 cut(s) 299, 329, 698, 728, 941, 971
Bsc4I CCNNNNNNNGG 9 cut(s) 377, 395, 436, 556, 885, 925, 930, 1000, 1062
Bse118I RCCGGY 3 cut(s) 205, 288, 1121
Bse1I ACTGG 3 cut(s) 241, 325, 346
Bse8I GATNNNNATC 1 cut(s) 1146
BseAI TCCGGA 1 cut(s) 418
BseBI CCWGG 5 cut(s) 14, 326, 335, 464, 1076
BseCI ATCGAT 1 cut(s) 491
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 1146
BseLI CCNNNNNNNGG 9 cut(s) 377, 395, 436, 556, 885, 925, 930, 1000, 1062
BseMII CTCAG 8 cut(s) 225, 633, 663, 684, 759, 810, 975, 1145
BseNI ACTGG 3 cut(s) 241, 325, 346
BseRI GAGGAG 5 cut(s) 551, 572, 719, 845, 962
BseSI GKGCMC 1 cut(s) 505
BseX3I CGGCCG 1 cut(s) 1035
BseXI GCAGC 6 cut(s) 163, 673, 774, 853, 973, 976
BsgI GTGCAG 2 cut(s) 14, 170
Bsh1236I CGCG 1 cut(s) 926
Bsh1285I CGRYCG 2 cut(s) 436, 1038
BshNI GGYRCC 1 cut(s) 1118
BshVI ATCGAT 1 cut(s) 491
BsiEI CGRYCG 2 cut(s) 436, 1038
BsiHKCI CYCGRG 3 cut(s) 370, 483, 846
BslFI GGGAC 2 cut(s) 641, 863
BslI CCNNNNNNNGG 9 cut(s) 377, 395, 436, 556, 885, 925, 930, 1000, 1062
BsmAI GTCTC 5 cut(s) 74, 482, 886, 1076, 1134
BsmBI CGTCTC 2 cut(s) 482, 886
BsmFI GGGAC 2 cut(s) 641, 863
BsmI GAATGC 1 cut(s) 847
Bso31I GGTCTC 3 cut(s) 74, 1076, 1134
BsoBI CYCGRG 3 cut(s) 370, 483, 846
Bsp1286I GDGCHC 1 cut(s) 505
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 6 cut(s) 121, 275, 364, 374, 913, 1147
Bsp1720I GCTNAGC 1 cut(s) 672
Bsp19I CCATGG 1 cut(s) 159
BspCNI CTCAG 8 cut(s) 224, 634, 664, 685, 760, 811, 974, 1144
BspDI ATCGAT 1 cut(s) 491
BspEI TCCGGA 1 cut(s) 418
BspFNI CGCG 1 cut(s) 926
BspHI TCATGA 1 cut(s) 1011
BspLI GGNNCC 1 cut(s) 1120
BspMAI CTGCAG 1 cut(s) 871
BspMI ACCTGC 1 cut(s) 571
BspPI GGATC 4 cut(s) 270, 382, 921, 1155
BspT107I GGYRCC 1 cut(s) 1118
BspTNI GGTCTC 3 cut(s) 74, 1076, 1134
BsrBI CCGCTC 2 cut(s) 625, 1096
BsrFI RCCGGY 3 cut(s) 205, 288, 1121
BsrI ACTGG 3 cut(s) 241, 325, 346
BssAI RCCGGY 3 cut(s) 205, 288, 1121
BssMI GATC 6 cut(s) 121, 275, 364, 374, 913, 1147
BssNI GRCGYC 2 cut(s) 39, 528
BssSI CACGAG 1 cut(s) 935
BssT1I CCWWGG 3 cut(s) 46, 159, 394
Bst2BI CACGAG 1 cut(s) 935
Bst2UI CCWGG 5 cut(s) 14, 326, 335, 464, 1076
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 3 cut(s) 72, 266, 344
BstACI GRCGYC 2 cut(s) 39, 528
BstAPI GCANNNNNTGC 1 cut(s) 875
BstC8I GCNNGC 5 cut(s) 501, 532, 984, 1108, 1123
BstDSI CCRYGG 3 cut(s) 159, 924, 942
BstENI CCTNNNNNAGG 1 cut(s) 554
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 926
BstKTI GATC 6 cut(s) 124, 278, 367, 377, 916, 1150
BstMAI GTCTC 5 cut(s) 74, 482, 886, 1076, 1134
BstMBI GATC 6 cut(s) 121, 275, 364, 374, 913, 1147
BstMCI CGRYCG 2 cut(s) 436, 1038
BstMWI GCNNNNNNNGC 5 cut(s) 137, 527, 647, 773, 875
BstNI CCWGG 5 cut(s) 14, 326, 335, 464, 1076
BstSFI CTRYAG 1 cut(s) 867
BstSLI GKGCMC 1 cut(s) 505
BstUI CGCG 1 cut(s) 926
BstV1I GCAGC 6 cut(s) 163, 673, 774, 853, 973, 976
BstX2I RGATCY 1 cut(s) 275
BstXI CCANNNNNNTGG 1 cut(s) 341
BstYI RGATCY 1 cut(s) 275
BstZI CGGCCG 1 cut(s) 1035
Bsu15I ATCGAT 1 cut(s) 491
BsuI GTATCC 2 cut(s) 101, 535
BsuTUI ATCGAT 1 cut(s) 491
BtgI CCRYGG 3 cut(s) 159, 924, 942
BtgZI GCGATG 1 cut(s) 258
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 219, 318
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 5 cut(s) 501, 532, 984, 1108, 1123
CaiI CAGNNNCTG 1 cut(s) 875
CciI TCATGA 1 cut(s) 1011
Cfr10I RCCGGY 3 cut(s) 205, 288, 1121
Cfr13I GGNCC 2 cut(s) 69, 139
Cfr42I CCGCGG 1 cut(s) 927
Cfr9I CCCGGG 3 cut(s) 370, 483, 846
ClaI ATCGAT 1 cut(s) 491
CseI GACGC 2 cut(s) 137, 536
Csp6I GTAC 8 cut(s) 203, 316, 339, 517, 589, 715, 952, 1137
CviAII CATG 7 cut(s) 61, 160, 596, 722, 885, 979, 1012
CviQI GTAC 8 cut(s) 203, 316, 339, 517, 589, 715, 952, 1137
DpnI GATC 6 cut(s) 123, 277, 366, 376, 915, 1149
DpnII GATC 6 cut(s) 121, 275, 364, 374, 913, 1147
DraIII CACNNNGTG 1 cut(s) 148
DriI GACNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 5 cut(s) 162, 322, 648, 774, 1035
EagI CGGCCG 1 cut(s) 1035
Eam1104I CTCTTC 3 cut(s) 72, 266, 344
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 3 cut(s) 72, 266, 344
EclXI CGGCCG 1 cut(s) 1035
Eco130I CCWWGG 3 cut(s) 46, 159, 394
Eco31I GGTCTC 3 cut(s) 74, 1076, 1134
Eco32I GATATC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 69
Eco52I CGGCCG 1 cut(s) 1035
Eco57I CTGAAG 1 cut(s) 572
Eco88I CYCGRG 3 cut(s) 370, 483, 846
EcoNI CCTNNNNNAGG 1 cut(s) 554
EcoRII CCWGG 5 cut(s) 12, 324, 333, 462, 1074
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 3 cut(s) 46, 159, 394
ErhI CCWWGG 3 cut(s) 46, 159, 394
Esp3I CGTCTC 2 cut(s) 482, 886
FaeI CATG 7 cut(s) 64, 163, 599, 725, 888, 982, 1015
FaiI YATR 7 cut(s) 62, 161, 597, 723, 886, 980, 1013
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 2 cut(s) 641, 863
FatI CATG 7 cut(s) 60, 159, 595, 721, 884, 978, 1011
FauI CCCGC 8 cut(s) 418, 492, 618, 931, 1059, 1089, 1099, 1118
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 42
FokI GGATG 1 cut(s) 341
FspBI CTAG 2 cut(s) 47, 1046
GsuI CTGGAG 4 cut(s) 635, 761, 929, 1097
HgaI GACGC 2 cut(s) 137, 536
Hin1I GRCGYC 2 cut(s) 39, 528
Hin1II CATG 7 cut(s) 64, 163, 599, 725, 888, 982, 1015
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 8 cut(s) 64, 469, 488, 629, 755, 851, 872, 902
HphI GGTGA 9 cut(s) 125, 275, 322, 359, 378, 539, 595, 721, 847
Hpy166II GTNNAC 4 cut(s) 43, 116, 318, 517
Hpy188I TCNGA 3 cut(s) 856, 964, 1134
Hpy188III TCNNGA 5 cut(s) 125, 419, 908, 1012, 1046
Hpy8I GTNNAC 4 cut(s) 43, 116, 318, 517
Hpy99I CGWCG 4 cut(s) 41, 44, 131, 530
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 2 cut(s) 39, 314
HpyCH4V TGCA 3 cut(s) 31, 151, 869
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 527, 647, 773, 875
HpySE526I ACGT 2 cut(s) 39, 314
Hsp92I GRCGYC 2 cut(s) 39, 528
Hsp92II CATG 7 cut(s) 64, 163, 599, 725, 888, 982, 1015
Kpn2I TCCGGA 1 cut(s) 418
KroI GCCGGC 1 cut(s) 1121
KroNI GCCGGC 1 cut(s) 1123
Ksp22I TGATCA 1 cut(s) 121
KspI CCGCGG 1 cut(s) 927
Kzo9I GATC 6 cut(s) 121, 275, 364, 374, 913, 1147
LmnI GCTCC 4 cut(s) 136, 240, 622, 748
Lsp1109I GCAGC 6 cut(s) 163, 673, 774, 853, 973, 976
LweI GCATC 3 cut(s) 13, 301, 486
MaeI CTAG 2 cut(s) 47, 1046
MaeII ACGT 2 cut(s) 39, 314
MaeIII GTNAC 3 cut(s) 252, 310, 384
MalI GATC 6 cut(s) 123, 277, 366, 376, 915, 1149
MbiI CCGCTC 2 cut(s) 625, 1096
MboI GATC 6 cut(s) 121, 275, 364, 374, 913, 1147
MboII GAAGA 8 cut(s) 32, 89, 216, 280, 283, 361, 850, 871
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 505
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 1 cut(s) 1058
MluNI TGGCCA 1 cut(s) 324
MlyI GAGTC 6 cut(s) 73, 623, 749, 845, 881, 896
Mox20I TGGCCA 1 cut(s) 324
MroI TCCGGA 1 cut(s) 418
MroNI GCCGGC 1 cut(s) 1121
MscI TGGCCA 1 cut(s) 324
MseI TTAA 2 cut(s) 510, 1020
MslI CAYNNNNRTG 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 2 cut(s) 664, 926
Mva1269I GAATGC 1 cut(s) 847
MvaI CCWGG 5 cut(s) 14, 326, 335, 464, 1076
MvnI CGCG 1 cut(s) 926
MwoI GCNNNNNNNGC 5 cut(s) 137, 527, 647, 773, 875
NaeI GCCGGC 1 cut(s) 1123
NcoI CCATGG 1 cut(s) 159
NdeII GATC 6 cut(s) 121, 275, 364, 374, 913, 1147
NgoMIV GCCGGC 1 cut(s) 1121
NlaIII CATG 7 cut(s) 64, 163, 599, 725, 888, 982, 1015
NlaIV GGNNCC 1 cut(s) 1120
NmuCI GTSAC 2 cut(s) 310, 384
PagI TCATGA 1 cut(s) 1011
PaqCI CACCTGC 1 cut(s) 571
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PctI GAATGC 1 cut(s) 847
PdiI GCCGGC 1 cut(s) 1123
PfeI GAWTC 2 cut(s) 469, 488
PfoI TCCNGGA 1 cut(s) 1074
PleI GAGTC 6 cut(s) 72, 623, 749, 845, 880, 896
PpsI GAGTC 6 cut(s) 72, 623, 749, 845, 880, 896
Psp6I CCWGG 5 cut(s) 12, 324, 333, 462, 1074
PspGI CCWGG 5 cut(s) 12, 324, 333, 462, 1074
PspN4I GGNNCC 1 cut(s) 1120
PspPI GGNCC 2 cut(s) 69, 139
PstI CTGCAG 1 cut(s) 871
PstNI CAGNNNCTG 1 cut(s) 875
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 8 cut(s) 204, 317, 340, 518, 590, 716, 953, 1138
RsaNI GTAC 8 cut(s) 203, 316, 339, 517, 589, 715, 952, 1137
RseI CAYNNNNRTG 1 cut(s) 191
SacII CCGCGG 1 cut(s) 927
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 510, 1020
Sau3AI GATC 6 cut(s) 121, 275, 364, 374, 913, 1147
Sau96I GGNCC 2 cut(s) 69, 139
SchI GAGTC 6 cut(s) 73, 623, 749, 845, 881, 896
SduI GDGCHC 1 cut(s) 505
SfaNI GCATC 3 cut(s) 13, 301, 486
SfcI CTRYAG 1 cut(s) 867
Sfr303I CCGCGG 1 cut(s) 927
SgrBI CCGCGG 1 cut(s) 927
SinI GGWCC 1 cut(s) 69
SmaI CCCGGG 3 cut(s) 372, 485, 848
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 677, 803
SmoI CTYRAG 2 cut(s) 677, 803
Sse9I AATT 1 cut(s) 1058
SspMI CTAG 2 cut(s) 47, 1046
StyI CCWWGG 3 cut(s) 46, 159, 394
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 2 cut(s) 42, 317
TaqI TCGA 9 cut(s) 36, 42, 53, 295, 426, 432, 442, 491, 525
TaqII GACCGA 1 cut(s) 57
TasI AATT 1 cut(s) 1058
TatI WGTACW 1 cut(s) 951
TauI GCSGC 4 cut(s) 653, 779, 1037, 1106
TfiI GAWTC 2 cut(s) 469, 488
Tru1I TTAA 2 cut(s) 510, 1020
Tru9I TTAA 2 cut(s) 510, 1020
TscAI CASTG 2 cut(s) 219, 325
TseFI GTSAC 2 cut(s) 310, 384
TseI GCWGC 6 cut(s) 151, 661, 787, 866, 986, 989
Tsp45I GTSAC 2 cut(s) 310, 384
TspDTI ATGAA 3 cut(s) 584, 710, 1028
TspMI CCCGGG 3 cut(s) 370, 483, 846
TspRI CASTG 2 cut(s) 219, 325
VpaK11BI GGWCC 1 cut(s) 69
XagI CCTNNNNNAGG 1 cut(s) 554
XapI RAATTY 1 cut(s) 1058
XbaI TCTAGA 1 cut(s) 1045
XmaI CCCGGG 3 cut(s) 370, 483, 846
XmaJI CCTAGG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 2 cut(s) 47, 1046
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.