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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 332 |
| AccB1I | GGYRCC | 1 cut(s) | 566 |
| AciI | CCGC | 3 cut(s) | 57, 482, 514 |
| AcoI | YGGCCR | 2 cut(s) | 128, 250 |
| AcsI | RAATTY | 1 cut(s) | 18 |
| AcyI | GRCGYC | 1 cut(s) | 329 |
| AfaI | GTAC | 1 cut(s) | 401 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 137, 240, 259, 510 |
| AgsI | TTSAA | 4 cut(s) | 152, 307, 377, 527 |
| AjnI | CCWGG | 1 cut(s) | 558 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 132, 164 |
| AluBI | AGCT | 4 cut(s) | 160, 198, 314, 418 |
| AluI | AGCT | 4 cut(s) | 160, 198, 314, 418 |
| Alw26I | GTCTC | 2 cut(s) | 91, 294 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 323 |
| AoxI | GGCC | 2 cut(s) | 128, 250 |
| ApeKI | GCWGC | 3 cut(s) | 314, 437, 551 |
| ApoI | RAATTY | 1 cut(s) | 18 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 147, 366 |
| AspLEI | GCGC | 1 cut(s) | 96 |
| AsuHPI | GGTGA | 1 cut(s) | 274 |
| BanI | GGYRCC | 1 cut(s) | 566 |
| BanII | GRGCYC | 1 cut(s) | 410 |
| BbsI | GAAGAC | 1 cut(s) | 359 |
| BbvI | GCAGC | 3 cut(s) | 301, 424, 538 |
| BciT130I | CCWGG | 1 cut(s) | 560 |
| BcoDI | GTCTC | 2 cut(s) | 91, 294 |
| BfaI | CTAG | 1 cut(s) | 356 |
| BfmI | CTRYAG | 1 cut(s) | 315 |
| BfoI | RGCGCY | 1 cut(s) | 97 |
| BisI | GCNGC | 4 cut(s) | 57, 315, 438, 552 |
| BlsI | GCNGC | 4 cut(s) | 58, 316, 439, 553 |
| Bme1390I | CCNGG | 1 cut(s) | 560 |
| BmiI | GGNNCC | 2 cut(s) | 568, 577 |
| BmrFI | CCNGG | 1 cut(s) | 560 |
| BmsI | GCATC | 2 cut(s) | 84, 563 |
| BpiI | GAAGAC | 1 cut(s) | 359 |
| BpmI | CTGGAG | 1 cut(s) | 159 |
| BpuEI | CTTGAG | 1 cut(s) | 396 |
| BsaHI | GRCGYC | 1 cut(s) | 329 |
| BsaJI | CCNNGG | 3 cut(s) | 100, 558, 559 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 132, 162 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 137, 240, 259, 510 |
| Bse118I | RCCGGY | 1 cut(s) | 569 |
| BseBI | CCWGG | 1 cut(s) | 560 |
| BseDI | CCNNGG | 3 cut(s) | 100, 558, 559 |
| BseGI | GGATG | 3 cut(s) | 22, 502, 554 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 137, 240, 259, 510 |
| BseMII | CTCAG | 1 cut(s) | 387 |
| BseRI | GAGGAG | 1 cut(s) | 422 |
| BseXI | GCAGC | 3 cut(s) | 301, 424, 538 |
| Bsh1285I | CGRYCG | 1 cut(s) | 486 |
| BshFI | GGCC | 2 cut(s) | 130, 252 |
| BshNI | GGYRCC | 1 cut(s) | 566 |
| BsiEI | CGRYCG | 1 cut(s) | 486 |
| BsiSI | CCGG | 3 cut(s) | 131, 253, 570 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 137, 240, 259, 510 |
| BsmAI | GTCTC | 2 cut(s) | 91, 294 |
| BsmBI | CGTCTC | 1 cut(s) | 91 |
| BsnI | GGCC | 2 cut(s) | 130, 252 |
| Bsp1286I | GDGCHC | 1 cut(s) | 410 |
| BspACI | CCGC | 3 cut(s) | 57, 482, 514 |
| BspANI | GGCC | 2 cut(s) | 130, 252 |
| BspCNI | CTCAG | 1 cut(s) | 388 |
| BspLI | GGNNCC | 2 cut(s) | 568, 577 |
| BspMAI | CTGCAG | 1 cut(s) | 319 |
| BspT107I | GGYRCC | 1 cut(s) | 566 |
| BsrFI | RCCGGY | 1 cut(s) | 569 |
| BssAI | RCCGGY | 1 cut(s) | 569 |
| BssECI | CCNNGG | 3 cut(s) | 100, 558, 559 |
| BssNI | GRCGYC | 1 cut(s) | 329 |
| BssT1I | CCWWGG | 1 cut(s) | 100 |
| Bst2UI | CCWGG | 1 cut(s) | 560 |
| Bst4CI | ACNGT | 1 cut(s) | 148 |
| Bst6I | CTCTTC | 4 cut(s) | 177, 186, 260, 288 |
| BstACI | GRCGYC | 1 cut(s) | 329 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 323 |
| BstDEI | CTNAG | 2 cut(s) | 108, 396 |
| BstF5I | GGATG | 3 cut(s) | 22, 502, 554 |
| BstH2I | RGCGCY | 1 cut(s) | 97 |
| BstHHI | GCGC | 1 cut(s) | 96 |
| BstMAI | GTCTC | 2 cut(s) | 91, 294 |
| BstMCI | CGRYCG | 1 cut(s) | 486 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 323 |
| BstNI | CCWGG | 1 cut(s) | 560 |
| BstNSI | RCATGY | 1 cut(s) | 430 |
| BstSCI | CCNGG | 1 cut(s) | 558 |
| BstSFI | CTRYAG | 1 cut(s) | 315 |
| BstV1I | GCAGC | 3 cut(s) | 301, 424, 538 |
| BstV2I | GAAGAC | 1 cut(s) | 359 |
| BsuRI | GGCC | 2 cut(s) | 130, 252 |
| BtsCI | GGATG | 3 cut(s) | 22, 502, 554 |
| CaiI | CAGNNNCTG | 1 cut(s) | 323 |
| CfoI | GCGC | 1 cut(s) | 96 |
| Cfr10I | RCCGGY | 1 cut(s) | 569 |
| Csp6I | GTAC | 1 cut(s) | 400 |
| CviAII | CATG | 3 cut(s) | 90, 333, 427 |
| CviQI | GTAC | 1 cut(s) | 400 |
| DdeI | CTNAG | 2 cut(s) | 108, 396 |
| EaeI | YGGCCR | 2 cut(s) | 128, 250 |
| Eam1104I | CTCTTC | 4 cut(s) | 177, 186, 260, 288 |
| EarI | CTCTTC | 4 cut(s) | 177, 186, 260, 288 |
| Eco130I | CCWWGG | 1 cut(s) | 100 |
| Eco24I | GRGCYC | 1 cut(s) | 410 |
| EcoRII | CCWGG | 1 cut(s) | 558 |
| EcoT14I | CCWWGG | 1 cut(s) | 100 |
| EcoT38I | GRGCYC | 1 cut(s) | 410 |
| ErhI | CCWWGG | 1 cut(s) | 100 |
| Esp3I | CGTCTC | 1 cut(s) | 91 |
| FaeI | CATG | 3 cut(s) | 93, 336, 430 |
| FaiI | YATR | 9 cut(s) | 51, 91, 216, 249, 334, 428, 468, 492, 494 |
| FatI | CATG | 3 cut(s) | 89, 332, 426 |
| FauI | CCCGC | 1 cut(s) | 507 |
| Fnu4HI | GCNGC | 4 cut(s) | 57, 315, 438, 552 |
| FokI | GGATG | 3 cut(s) | 9, 509, 541 |
| FriOI | GRGCYC | 1 cut(s) | 410 |
| Fsp4HI | GCNGC | 4 cut(s) | 57, 315, 438, 552 |
| FspBI | CTAG | 1 cut(s) | 356 |
| GlaI | GCGC | 1 cut(s) | 95 |
| GluI | GCNGC | 4 cut(s) | 57, 315, 438, 552 |
| GsuI | CTGGAG | 1 cut(s) | 159 |
| HaeII | RGCGCY | 1 cut(s) | 97 |
| HaeIII | GGCC | 2 cut(s) | 130, 252 |
| HapII | CCGG | 3 cut(s) | 131, 253, 570 |
| HhaI | GCGC | 1 cut(s) | 96 |
| Hin1I | GRCGYC | 1 cut(s) | 329 |
| Hin1II | CATG | 3 cut(s) | 93, 336, 430 |
| Hin6I | GCGC | 1 cut(s) | 94 |
| HinP1I | GCGC | 1 cut(s) | 94 |
| HinfI | GANTC | 4 cut(s) | 32, 134, 170, 320 |
| HpaII | CCGG | 3 cut(s) | 131, 253, 570 |
| HphI | GGTGA | 1 cut(s) | 274 |
| Hpy188III | TCNNGA | 5 cut(s) | 138, 174, 413, 524, 579 |
| Hpy99I | CGWCG | 2 cut(s) | 233, 331 |
| HpyAV | CCTTC | 5 cut(s) | 37, 181, 253, 301, 331 |
| HpyCH4III | ACNGT | 1 cut(s) | 148 |
| HpyCH4IV | ACGT | 3 cut(s) | 84, 329, 364 |
| HpyCH4V | TGCA | 2 cut(s) | 317, 554 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 323 |
| HpyF3I | CTNAG | 2 cut(s) | 108, 396 |
| HpySE526I | ACGT | 3 cut(s) | 84, 329, 364 |
| Hsp92I | GRCGYC | 1 cut(s) | 329 |
| Hsp92II | CATG | 3 cut(s) | 93, 336, 430 |
| HspAI | GCGC | 1 cut(s) | 94 |
| LmnI | GCTCC | 2 cut(s) | 72, 435 |
| Lsp1109I | GCAGC | 3 cut(s) | 301, 424, 538 |
| LweI | GCATC | 2 cut(s) | 84, 563 |
| MaeI | CTAG | 1 cut(s) | 356 |
| MaeII | ACGT | 3 cut(s) | 84, 329, 364 |
| MaeIII | GTNAC | 1 cut(s) | 8 |
| MboII | GAAGA | 8 cut(s) | 27, 194, 203, 268, 277, 305, 359, 547 |
| MhlI | GDGCHC | 1 cut(s) | 410 |
| MluCI | AATT | 2 cut(s) | 18, 153 |
| MlyI | GAGTC | 1 cut(s) | 329 |
| MmeI | TCCRAC | 1 cut(s) | 227 |
| MroXI | GAANNNNTTC | 2 cut(s) | 147, 366 |
| MseI | TTAA | 2 cut(s) | 156, 221 |
| MspI | CCGG | 3 cut(s) | 131, 253, 570 |
| MspR9I | CCNGG | 1 cut(s) | 560 |
| MvaI | CCWGG | 1 cut(s) | 560 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 323 |
| NlaIII | CATG | 3 cut(s) | 93, 336, 430 |
| NlaIV | GGNNCC | 2 cut(s) | 568, 577 |
| NspI | RCATGY | 1 cut(s) | 430 |
| PasI | CCCWGGG | 1 cut(s) | 559 |
| PdmI | GAANNNNTTC | 2 cut(s) | 147, 366 |
| PfeI | GAWTC | 3 cut(s) | 32, 134, 170 |
| PkrI | GCNGC | 4 cut(s) | 58, 316, 439, 553 |
| PleI | GAGTC | 1 cut(s) | 328 |
| PpsI | GAGTC | 1 cut(s) | 328 |
| Psp6I | CCWGG | 1 cut(s) | 558 |
| PspGI | CCWGG | 1 cut(s) | 558 |
| PspN4I | GGNNCC | 2 cut(s) | 568, 577 |
| PstI | CTGCAG | 1 cut(s) | 319 |
| PstNI | CAGNNNCTG | 1 cut(s) | 323 |
| RsaI | GTAC | 1 cut(s) | 401 |
| RsaNI | GTAC | 1 cut(s) | 400 |
| SaqAI | TTAA | 2 cut(s) | 156, 221 |
| SatI | GCNGC | 4 cut(s) | 57, 315, 438, 552 |
| SchI | GAGTC | 1 cut(s) | 329 |
| ScrFI | CCNGG | 1 cut(s) | 560 |
| SduI | GDGCHC | 1 cut(s) | 410 |
| SfaNI | GCATC | 2 cut(s) | 84, 563 |
| SfcI | CTRYAG | 1 cut(s) | 315 |
| SmlI | CTYRAG | 1 cut(s) | 411 |
| SmoI | CTYRAG | 1 cut(s) | 411 |
| Sse9I | AATT | 2 cut(s) | 18, 153 |
| SsiI | CCGC | 3 cut(s) | 57, 482, 514 |
| SspMI | CTAG | 1 cut(s) | 356 |
| StyD4I | CCNGG | 1 cut(s) | 558 |
| StyI | CCWWGG | 1 cut(s) | 100 |
| TaaI | ACNGT | 1 cut(s) | 148 |
| TaiI | ACGT | 3 cut(s) | 87, 332, 367 |
| TaqI | TCGA | 1 cut(s) | 30 |
| TasI | AATT | 2 cut(s) | 18, 153 |
| TatI | WGTACW | 1 cut(s) | 399 |
| TauI | GCSGC | 1 cut(s) | 59 |
| TfiI | GAWTC | 3 cut(s) | 32, 134, 170 |
| Tru1I | TTAA | 2 cut(s) | 156, 221 |
| Tru9I | TTAA | 2 cut(s) | 156, 221 |
| TseI | GCWGC | 3 cut(s) | 314, 437, 551 |
| TspDTI | ATGAA | 5 cut(s) | 11, 17, 38, 195, 513 |
| TspGWI | ACGGA | 1 cut(s) | 217 |
| XapI | RAATTY | 1 cut(s) | 18 |
| XceI | RCATGY | 1 cut(s) | 430 |
| XmnI | GAANNNNTTC | 2 cut(s) | 147, 366 |
| XspI | CTAG | 1 cut(s) | 356 |
| ZraI | GACGTC | 1 cut(s) | 330 |