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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 621 |
| AccI | GTMKAC | 1 cut(s) | 309 |
| AccII | CGCG | 1 cut(s) | 300 |
| AciI | CCGC | 4 cut(s) | 300, 303, 345, 482 |
| AclWI | GGATC | 2 cut(s) | 37, 505 |
| AcsI | RAATTY | 1 cut(s) | 461 |
| AdeI | CACNNNGTG | 1 cut(s) | 479 |
| AfaI | GTAC | 1 cut(s) | 614 |
| AfeI | AGCGCT | 1 cut(s) | 38 |
| AgsI | TTSAA | 2 cut(s) | 248, 668 |
| AluBI | AGCT | 7 cut(s) | 70, 106, 133, 146, 174, 213, 261 |
| AluI | AGCT | 7 cut(s) | 70, 106, 133, 146, 174, 213, 261 |
| Alw21I | GWGCWC | 1 cut(s) | 72 |
| Alw26I | GTCTC | 1 cut(s) | 227 |
| AlwI | GGATC | 2 cut(s) | 37, 505 |
| Aor51HI | AGCGCT | 1 cut(s) | 38 |
| AoxI | GGCC | 2 cut(s) | 327, 350 |
| ApeKI | GCWGC | 3 cut(s) | 43, 58, 338 |
| ApoI | RAATTY | 1 cut(s) | 461 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 269, 301 |
| AspLEI | GCGC | 1 cut(s) | 39 |
| AxyI | CCTNAGG | 1 cut(s) | 429 |
| BanII | GRGCYC | 1 cut(s) | 72 |
| Bbv12I | GWGCWC | 1 cut(s) | 72 |
| BbvI | GCAGC | 3 cut(s) | 30, 45, 325 |
| BccI | CCATC | 2 cut(s) | 373, 488 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 320, 337, 354, 371 |
| BcoDI | GTCTC | 1 cut(s) | 227 |
| BfaI | CTAG | 1 cut(s) | 264 |
| BfmI | CTRYAG | 1 cut(s) | 186 |
| BfoI | RGCGCY | 1 cut(s) | 40 |
| BglII | AGATCT | 2 cut(s) | 96, 558 |
| BisI | GCNGC | 5 cut(s) | 44, 59, 301, 339, 346 |
| BlsI | GCNGC | 5 cut(s) | 45, 60, 302, 340, 347 |
| BmsI | GCATC | 1 cut(s) | 55 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 197, 229 |
| BpmI | CTGGAG | 1 cut(s) | 238 |
| BpuEI | CTTGAG | 1 cut(s) | 393 |
| BsaI | GGTCTC | 1 cut(s) | 227 |
| Bse21I | CCTNAGG | 1 cut(s) | 429 |
| BseGI | GGATG | 3 cut(s) | 46, 384, 499 |
| BseMII | CTCAG | 1 cut(s) | 566 |
| BseXI | GCAGC | 3 cut(s) | 30, 45, 325 |
| BseYI | CCCAGC | 1 cut(s) | 106 |
| Bsh1236I | CGCG | 1 cut(s) | 300 |
| BshFI | GGCC | 2 cut(s) | 329, 352 |
| BsiHKAI | GWGCWC | 1 cut(s) | 72 |
| BsiSI | CCGG | 1 cut(s) | 216 |
| BslFI | GGGAC | 1 cut(s) | 123 |
| BsmAI | GTCTC | 1 cut(s) | 227 |
| BsmFI | GGGAC | 1 cut(s) | 123 |
| BsmI | GAATGC | 1 cut(s) | 419 |
| BsnI | GGCC | 2 cut(s) | 329, 352 |
| Bso31I | GGTCTC | 1 cut(s) | 227 |
| Bsp1286I | GDGCHC | 1 cut(s) | 72 |
| Bsp143I | GATC | 4 cut(s) | 29, 96, 497, 558 |
| BspACI | CCGC | 4 cut(s) | 300, 303, 345, 482 |
| BspANI | GGCC | 2 cut(s) | 329, 352 |
| BspCNI | CTCAG | 1 cut(s) | 567 |
| BspFNI | CGCG | 1 cut(s) | 300 |
| BspPI | GGATC | 2 cut(s) | 37, 505 |
| BspTNI | GGTCTC | 1 cut(s) | 227 |
| BssMI | GATC | 4 cut(s) | 29, 96, 497, 558 |
| Bst4CI | ACNGT | 2 cut(s) | 161, 226 |
| Bst6I | CTCTTC | 1 cut(s) | 127 |
| BstC8I | GCNNGC | 3 cut(s) | 41, 343, 350 |
| BstDEI | CTNAG | 3 cut(s) | 33, 429, 575 |
| BstF5I | GGATG | 3 cut(s) | 46, 384, 499 |
| BstFNI | CGCG | 1 cut(s) | 300 |
| BstH2I | RGCGCY | 1 cut(s) | 40 |
| BstHHI | GCGC | 1 cut(s) | 39 |
| BstKTI | GATC | 4 cut(s) | 32, 99, 500, 561 |
| BstMAI | GTCTC | 1 cut(s) | 227 |
| BstMBI | GATC | 4 cut(s) | 29, 96, 497, 558 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 43, 67, 335 |
| BstSFI | CTRYAG | 1 cut(s) | 186 |
| BstUI | CGCG | 1 cut(s) | 300 |
| BstV1I | GCAGC | 3 cut(s) | 30, 45, 325 |
| BstX2I | RGATCY | 4 cut(s) | 29, 96, 497, 558 |
| BstYI | RGATCY | 4 cut(s) | 29, 96, 497, 558 |
| Bsu36I | CCTNAGG | 1 cut(s) | 429 |
| BsuRI | GGCC | 2 cut(s) | 329, 352 |
| BtsCI | GGATG | 3 cut(s) | 46, 384, 499 |
| BtsI | GCAGTG | 1 cut(s) | 237 |
| BtsIMutI | CAGTG | 3 cut(s) | 237, 559, 599 |
| Cac8I | GCNNGC | 3 cut(s) | 41, 343, 350 |
| CfoI | GCGC | 1 cut(s) | 39 |
| Csp6I | GTAC | 1 cut(s) | 613 |
| CviAII | CATG | 4 cut(s) | 86, 230, 503, 565 |
| CviQI | GTAC | 1 cut(s) | 613 |
| DdeI | CTNAG | 3 cut(s) | 33, 429, 575 |
| DpnI | GATC | 4 cut(s) | 31, 98, 499, 560 |
| DpnII | GATC | 4 cut(s) | 29, 96, 497, 558 |
| DraIII | CACNNNGTG | 1 cut(s) | 479 |
| Eam1104I | CTCTTC | 1 cut(s) | 127 |
| EarI | CTCTTC | 1 cut(s) | 127 |
| Ecl136II | GAGCTC | 1 cut(s) | 70 |
| Eco24I | GRGCYC | 1 cut(s) | 72 |
| Eco31I | GGTCTC | 1 cut(s) | 227 |
| Eco47III | AGCGCT | 1 cut(s) | 38 |
| Eco53kI | GAGCTC | 1 cut(s) | 70 |
| Eco81I | CCTNAGG | 1 cut(s) | 429 |
| EcoICRI | GAGCTC | 1 cut(s) | 70 |
| EcoT38I | GRGCYC | 1 cut(s) | 72 |
| FaeI | CATG | 4 cut(s) | 89, 233, 506, 568 |
| FaiI | YATR | 9 cut(s) | 87, 128, 177, 231, 449, 504, 566, 621, 657 |
| FaqI | GGGAC | 1 cut(s) | 123 |
| FatI | CATG | 4 cut(s) | 85, 229, 502, 564 |
| FblI | GTMKAC | 1 cut(s) | 309 |
| Fnu4HI | GCNGC | 5 cut(s) | 44, 59, 301, 339, 346 |
| FokI | GGATG | 3 cut(s) | 33, 391, 506 |
| FriOI | GRGCYC | 1 cut(s) | 72 |
| Fsp4HI | GCNGC | 5 cut(s) | 44, 59, 301, 339, 346 |
| FspBI | CTAG | 1 cut(s) | 264 |
| GlaI | GCGC | 1 cut(s) | 38 |
| GluI | GCNGC | 5 cut(s) | 44, 59, 301, 339, 346 |
| GsaI | CCCAGC | 1 cut(s) | 110 |
| GsuI | CTGGAG | 1 cut(s) | 238 |
| HaeII | RGCGCY | 1 cut(s) | 40 |
| HaeIII | GGCC | 2 cut(s) | 329, 352 |
| HapII | CCGG | 1 cut(s) | 216 |
| HhaI | GCGC | 1 cut(s) | 39 |
| Hin1II | CATG | 4 cut(s) | 89, 233, 506, 568 |
| Hin6I | GCGC | 1 cut(s) | 37 |
| HinP1I | GCGC | 1 cut(s) | 37 |
| HincII | GTYRAC | 1 cut(s) | 310 |
| HindII | GTYRAC | 1 cut(s) | 310 |
| HinfI | GANTC | 6 cut(s) | 12, 82, 111, 316, 388, 537 |
| HpaII | CCGG | 1 cut(s) | 216 |
| Hpy166II | GTNNAC | 1 cut(s) | 310 |
| Hpy188I | TCNGA | 3 cut(s) | 67, 274, 359 |
| Hpy188III | TCNNGA | 9 cut(s) | 50, 255, 264, 320, 376, 392, 410, 544, 574 |
| Hpy8I | GTNNAC | 1 cut(s) | 310 |
| Hpy99I | CGWCG | 3 cut(s) | 281, 314, 373 |
| HpyCH4III | ACNGT | 2 cut(s) | 161, 226 |
| HpyCH4IV | ACGT | 2 cut(s) | 279, 615 |
| HpyCH4V | TGCA | 1 cut(s) | 46 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 43, 67, 335 |
| HpyF3I | CTNAG | 3 cut(s) | 33, 429, 575 |
| HpySE526I | ACGT | 2 cut(s) | 279, 615 |
| Hsp92II | CATG | 4 cut(s) | 89, 233, 506, 568 |
| HspAI | GCGC | 1 cut(s) | 37 |
| Kzo9I | GATC | 4 cut(s) | 29, 96, 497, 558 |
| LmnI | GCTCC | 2 cut(s) | 138, 218 |
| Lsp1109I | GCAGC | 3 cut(s) | 30, 45, 325 |
| LweI | GCATC | 1 cut(s) | 55 |
| MaeI | CTAG | 1 cut(s) | 264 |
| MaeII | ACGT | 2 cut(s) | 279, 615 |
| MalI | GATC | 4 cut(s) | 31, 98, 499, 560 |
| MboI | GATC | 4 cut(s) | 29, 96, 497, 558 |
| MboII | GAAGA | 4 cut(s) | 13, 91, 114, 446 |
| MflI | RGATCY | 4 cut(s) | 29, 96, 497, 558 |
| MhlI | GDGCHC | 1 cut(s) | 72 |
| MluCI | AATT | 4 cut(s) | 148, 248, 438, 461 |
| MlyI | GAGTC | 1 cut(s) | 105 |
| MmeI | TCCRAC | 1 cut(s) | 177 |
| MnlI | CCTC | 3 cut(s) | 283, 377, 589 |
| MseI | TTAA | 2 cut(s) | 441, 630 |
| MslI | CAYNNNNRTG | 1 cut(s) | 660 |
| MspA1I | CMGCKG | 1 cut(s) | 106 |
| MspI | CCGG | 1 cut(s) | 216 |
| Mva1269I | GAATGC | 1 cut(s) | 419 |
| MvnI | CGCG | 1 cut(s) | 300 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 43, 67, 335 |
| NdeII | GATC | 4 cut(s) | 29, 96, 497, 558 |
| NlaIII | CATG | 4 cut(s) | 89, 233, 506, 568 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 285, 537 |
| PctI | GAATGC | 1 cut(s) | 419 |
| PfeI | GAWTC | 5 cut(s) | 12, 82, 316, 388, 537 |
| PflFI | GACNNNGTC | 1 cut(s) | 224 |
| PkrI | GCNGC | 5 cut(s) | 45, 60, 302, 340, 347 |
| PleI | GAGTC | 1 cut(s) | 105 |
| PpsI | GAGTC | 1 cut(s) | 105 |
| PsiI | TTATAA | 1 cut(s) | 621 |
| Psp124BI | GAGCTC | 1 cut(s) | 72 |
| PspFI | CCCAGC | 1 cut(s) | 106 |
| PsuI | RGATCY | 4 cut(s) | 29, 96, 497, 558 |
| PsyI | GACNNNGTC | 1 cut(s) | 224 |
| PvuII | CAGCTG | 1 cut(s) | 106 |
| RsaI | GTAC | 1 cut(s) | 614 |
| RsaNI | GTAC | 1 cut(s) | 613 |
| RseI | CAYNNNNRTG | 1 cut(s) | 660 |
| SacI | GAGCTC | 1 cut(s) | 72 |
| SalI | GTCGAC | 1 cut(s) | 308 |
| SaqAI | TTAA | 2 cut(s) | 441, 630 |
| SatI | GCNGC | 5 cut(s) | 44, 59, 301, 339, 346 |
| Sau3AI | GATC | 4 cut(s) | 29, 96, 497, 558 |
| SchI | GAGTC | 1 cut(s) | 105 |
| SduI | GDGCHC | 1 cut(s) | 72 |
| SfaNI | GCATC | 1 cut(s) | 55 |
| SfcI | CTRYAG | 1 cut(s) | 186 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 660 |
| SmlI | CTYRAG | 1 cut(s) | 408 |
| SmoI | CTYRAG | 1 cut(s) | 408 |
| Sse9I | AATT | 4 cut(s) | 148, 248, 438, 461 |
| SsiI | CCGC | 4 cut(s) | 300, 303, 345, 482 |
| SspMI | CTAG | 1 cut(s) | 264 |
| SstI | GAGCTC | 1 cut(s) | 72 |
| TaaI | ACNGT | 2 cut(s) | 161, 226 |
| TaiI | ACGT | 2 cut(s) | 282, 618 |
| TaqI | TCGA | 6 cut(s) | 114, 204, 288, 309, 391, 594 |
| TaqII | GACCGA | 1 cut(s) | 361 |
| TasI | AATT | 4 cut(s) | 148, 248, 438, 461 |
| TauI | GCSGC | 2 cut(s) | 303, 348 |
| TfiI | GAWTC | 5 cut(s) | 12, 82, 316, 388, 537 |
| Tru1I | TTAA | 2 cut(s) | 441, 630 |
| Tru9I | TTAA | 2 cut(s) | 441, 630 |
| TscAI | CASTG | 3 cut(s) | 244, 559, 606 |
| TseI | GCWGC | 3 cut(s) | 43, 58, 338 |
| TspDTI | ATGAA | 3 cut(s) | 413, 437, 474 |
| TspGWI | ACGGA | 1 cut(s) | 125 |
| TspRI | CASTG | 3 cut(s) | 244, 559, 606 |
| Tth111I | GACNNNGTC | 1 cut(s) | 224 |
| XapI | RAATTY | 1 cut(s) | 461 |
| XbaI | TCTAGA | 1 cut(s) | 263 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 23 |
| XmiI | GTMKAC | 1 cut(s) | 309 |
| XspI | CTAG | 1 cut(s) | 264 |