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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 88 |
| Acc36I | ACCTGC | 1 cut(s) | 88 |
| Acc65I | GGTACC | 1 cut(s) | 387 |
| AccB1I | GGYRCC | 1 cut(s) | 387 |
| AccBSI | CCGCTC | 1 cut(s) | 142 |
| AccII | CGCG | 1 cut(s) | 218 |
| AciI | CCGC | 6 cut(s) | 40, 142, 200, 412, 449, 486 |
| AclWI | GGATC | 2 cut(s) | 468, 481 |
| AcsI | RAATTY | 1 cut(s) | 404 |
| AcuI | CTGAAG | 1 cut(s) | 35 |
| AfaI | GTAC | 4 cut(s) | 281, 299, 389, 484 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 34, 271, 276, 408, 448 |
| AgsI | TTSAA | 2 cut(s) | 154, 367 |
| AjnI | CCWGG | 1 cut(s) | 441 |
| AluBI | AGCT | 3 cut(s) | 130, 223, 316 |
| AluI | AGCT | 3 cut(s) | 130, 223, 316 |
| Alw26I | GTCTC | 1 cut(s) | 42 |
| AlwI | GGATC | 2 cut(s) | 468, 481 |
| Ama87I | CYCGRG | 1 cut(s) | 81 |
| AoxI | GGCC | 4 cut(s) | 42, 123, 285, 348 |
| ApeKI | GCWGC | 2 cut(s) | 335, 452 |
| ApoI | RAATTY | 1 cut(s) | 404 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 264 |
| Asp718I | GGTACC | 1 cut(s) | 387 |
| AspS9I | GGNCC | 1 cut(s) | 42 |
| AsuC2I | CCSGG | 1 cut(s) | 385 |
| AsuHPI | GGTGA | 1 cut(s) | 112 |
| AvaI | CYCGRG | 1 cut(s) | 81 |
| BamHI | GGATCC | 1 cut(s) | 473 |
| BanI | GGYRCC | 1 cut(s) | 387 |
| BanII | GRGCYC | 1 cut(s) | 308 |
| BbvI | GCAGC | 2 cut(s) | 322, 464 |
| BceAI | ACGGC | 2 cut(s) | 272, 335 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 179, 213 |
| BciT130I | CCWGG | 1 cut(s) | 443 |
| BclI | TGATCA | 1 cut(s) | 354 |
| BcnI | CCSGG | 1 cut(s) | 385 |
| BcoDI | GTCTC | 1 cut(s) | 42 |
| BfaI | CTAG | 1 cut(s) | 392 |
| BfmI | CTRYAG | 1 cut(s) | 489 |
| BfuAI | ACCTGC | 1 cut(s) | 88 |
| BisI | GCNGC | 4 cut(s) | 201, 336, 450, 453 |
| BlsI | GCNGC | 4 cut(s) | 202, 337, 451, 454 |
| Bme1390I | CCNGG | 2 cut(s) | 385, 443 |
| BmeT110I | CYCGRG | 1 cut(s) | 81 |
| BmgT120I | GGNCC | 1 cut(s) | 42 |
| BmiI | GGNNCC | 3 cut(s) | 307, 389, 475 |
| BmrFI | CCNGG | 2 cut(s) | 385, 443 |
| BmsI | GCATC | 2 cut(s) | 84, 187 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 131, 163 |
| BpmI | CTGGAG | 2 cut(s) | 152, 275 |
| BpuEI | CTTGAG | 4 cut(s) | 45, 245, 324, 443 |
| BpuMI | CCSGG | 1 cut(s) | 385 |
| BsaJI | CCNNGG | 2 cut(s) | 270, 288 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 290, 320 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 34, 271, 276, 408, 448 |
| BseBI | CCWGG | 1 cut(s) | 443 |
| BseDI | CCNNGG | 2 cut(s) | 270, 288 |
| BseGI | GGATG | 1 cut(s) | 202 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 34, 271, 276, 408, 448 |
| BseRI | GAGGAG | 1 cut(s) | 308 |
| BseXI | GCAGC | 2 cut(s) | 322, 464 |
| Bsh1236I | CGCG | 1 cut(s) | 218 |
| BshFI | GGCC | 4 cut(s) | 44, 125, 287, 350 |
| BshNI | GGYRCC | 1 cut(s) | 387 |
| BsiHKCI | CYCGRG | 1 cut(s) | 81 |
| BsiSI | CCGG | 1 cut(s) | 384 |
| BslFI | GGGAC | 2 cut(s) | 158, 429 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 34, 271, 276, 408, 448 |
| BsmAI | GTCTC | 1 cut(s) | 42 |
| BsmFI | GGGAC | 2 cut(s) | 158, 429 |
| BsnI | GGCC | 4 cut(s) | 44, 125, 287, 350 |
| BsoBI | CYCGRG | 1 cut(s) | 81 |
| Bsp1286I | GDGCHC | 1 cut(s) | 308 |
| Bsp143I | GATC | 3 cut(s) | 247, 354, 473 |
| Bsp68I | TCGCGA | 1 cut(s) | 218 |
| BspACI | CCGC | 6 cut(s) | 40, 142, 200, 412, 449, 486 |
| BspANI | GGCC | 4 cut(s) | 44, 125, 287, 350 |
| BspFNI | CGCG | 1 cut(s) | 218 |
| BspHI | TCATGA | 1 cut(s) | 357 |
| BspLI | GGNNCC | 3 cut(s) | 307, 389, 475 |
| BspMI | ACCTGC | 1 cut(s) | 88 |
| BspPI | GGATC | 2 cut(s) | 468, 481 |
| BspT107I | GGYRCC | 1 cut(s) | 387 |
| BsrBI | CCGCTC | 1 cut(s) | 142 |
| BssECI | CCNNGG | 2 cut(s) | 270, 288 |
| BssMI | GATC | 3 cut(s) | 247, 354, 473 |
| Bst2UI | CCWGG | 1 cut(s) | 443 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 42 |
| BstDSI | CCRYGG | 2 cut(s) | 270, 288 |
| BstEII | GGTNACC | 1 cut(s) | 184 |
| BstF5I | GGATG | 1 cut(s) | 202 |
| BstFNI | CGCG | 1 cut(s) | 218 |
| BstKTI | GATC | 3 cut(s) | 250, 357, 476 |
| BstMAI | GTCTC | 1 cut(s) | 42 |
| BstMBI | GATC | 3 cut(s) | 247, 354, 473 |
| BstNI | CCWGG | 1 cut(s) | 443 |
| BstPI | GGTNACC | 1 cut(s) | 184 |
| BstSCI | CCNGG | 2 cut(s) | 383, 441 |
| BstSFI | CTRYAG | 1 cut(s) | 489 |
| BstUI | CGCG | 1 cut(s) | 218 |
| BstV1I | GCAGC | 2 cut(s) | 322, 464 |
| BstX2I | RGATCY | 1 cut(s) | 473 |
| BstYI | RGATCY | 1 cut(s) | 473 |
| BsuRI | GGCC | 4 cut(s) | 44, 125, 287, 350 |
| BtgI | CCRYGG | 2 cut(s) | 270, 288 |
| BtgZI | GCGATG | 1 cut(s) | 56 |
| BtsCI | GGATG | 1 cut(s) | 202 |
| BtuMI | TCGCGA | 1 cut(s) | 218 |
| BveI | ACCTGC | 1 cut(s) | 88 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 42 |
| CciI | TCATGA | 1 cut(s) | 357 |
| Cfr13I | GGNCC | 1 cut(s) | 42 |
| Csp6I | GTAC | 4 cut(s) | 280, 298, 388, 483 |
| CviAII | CATG | 2 cut(s) | 113, 358 |
| CviQI | GTAC | 4 cut(s) | 280, 298, 388, 483 |
| DpnI | GATC | 3 cut(s) | 249, 356, 475 |
| DpnII | GATC | 3 cut(s) | 247, 354, 473 |
| Eco24I | GRGCYC | 1 cut(s) | 308 |
| Eco57I | CTGAAG | 1 cut(s) | 35 |
| Eco88I | CYCGRG | 1 cut(s) | 81 |
| Eco91I | GGTNACC | 1 cut(s) | 184 |
| EcoO65I | GGTNACC | 1 cut(s) | 184 |
| EcoRII | CCWGG | 1 cut(s) | 441 |
| EcoT38I | GRGCYC | 1 cut(s) | 308 |
| FaeI | CATG | 2 cut(s) | 116, 361 |
| FaiI | YATR | 6 cut(s) | 23, 114, 326, 359, 462, 491 |
| FaqI | GGGAC | 2 cut(s) | 158, 429 |
| FatI | CATG | 2 cut(s) | 112, 357 |
| FauI | CCCGC | 3 cut(s) | 33, 135, 405 |
| FbaI | TGATCA | 1 cut(s) | 354 |
| Fnu4HI | GCNGC | 4 cut(s) | 201, 336, 450, 453 |
| FokI | GGATG | 1 cut(s) | 209 |
| FriOI | GRGCYC | 1 cut(s) | 308 |
| Fsp4HI | GCNGC | 4 cut(s) | 201, 336, 450, 453 |
| FspBI | CTAG | 1 cut(s) | 392 |
| GluI | GCNGC | 4 cut(s) | 201, 336, 450, 453 |
| GsuI | CTGGAG | 2 cut(s) | 152, 275 |
| HaeIII | GGCC | 4 cut(s) | 44, 125, 287, 350 |
| HapII | CCGG | 1 cut(s) | 384 |
| Hin1II | CATG | 2 cut(s) | 116, 361 |
| HindIII | AAGCTT | 1 cut(s) | 221 |
| HinfI | GANTC | 4 cut(s) | 67, 86, 146, 175 |
| HpaII | CCGG | 1 cut(s) | 384 |
| HphI | GGTGA | 1 cut(s) | 112 |
| Hpy188III | TCNNGA | 7 cut(s) | 62, 83, 217, 254, 341, 358, 422 |
| HpyAV | CCTTC | 5 cut(s) | 10, 115, 130, 235, 275 |
| HpyCH4V | TGCA | 2 cut(s) | 97, 112 |
| Hsp92II | CATG | 2 cut(s) | 116, 361 |
| KpnI | GGTACC | 1 cut(s) | 391 |
| Ksp22I | TGATCA | 1 cut(s) | 354 |
| Kzo9I | GATC | 3 cut(s) | 247, 354, 473 |
| LmnI | GCTCC | 2 cut(s) | 139, 311 |
| Lsp1109I | GCAGC | 2 cut(s) | 322, 464 |
| LweI | GCATC | 2 cut(s) | 84, 187 |
| MaeI | CTAG | 1 cut(s) | 392 |
| MaeIII | GTNAC | 1 cut(s) | 184 |
| MalI | GATC | 3 cut(s) | 249, 356, 475 |
| MbiI | CCGCTC | 1 cut(s) | 142 |
| MboI | GATC | 3 cut(s) | 247, 354, 473 |
| MboII | GAAGA | 4 cut(s) | 172, 439, 442, 445 |
| MflI | RGATCY | 1 cut(s) | 473 |
| MhlI | GDGCHC | 1 cut(s) | 308 |
| MluCI | AATT | 1 cut(s) | 404 |
| MlyI | GAGTC | 3 cut(s) | 95, 140, 169 |
| MmeI | TCCRAC | 1 cut(s) | 174 |
| MnlI | CCTC | 7 cut(s) | 38, 69, 220, 250, 270, 286, 439 |
| MroXI | GAANNNNTTC | 1 cut(s) | 264 |
| MseI | TTAA | 1 cut(s) | 165 |
| MslI | CAYNNNNRTG | 1 cut(s) | 323 |
| MspI | CCGG | 1 cut(s) | 384 |
| MspR9I | CCNGG | 2 cut(s) | 385, 443 |
| MvaI | CCWGG | 1 cut(s) | 443 |
| MvnI | CGCG | 1 cut(s) | 218 |
| NciI | CCSGG | 1 cut(s) | 385 |
| NdeII | GATC | 3 cut(s) | 247, 354, 473 |
| NlaIII | CATG | 2 cut(s) | 116, 361 |
| NlaIV | GGNNCC | 3 cut(s) | 307, 389, 475 |
| NruI | TCGCGA | 1 cut(s) | 218 |
| PaeR7I | CTCGAG | 1 cut(s) | 81 |
| PagI | TCATGA | 1 cut(s) | 357 |
| PaqCI | CACCTGC | 1 cut(s) | 88 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 79 |
| PdmI | GAANNNNTTC | 1 cut(s) | 264 |
| PfeI | GAWTC | 1 cut(s) | 67 |
| PkrI | GCNGC | 4 cut(s) | 202, 337, 451, 454 |
| PleI | GAGTC | 3 cut(s) | 94, 140, 169 |
| PpsI | GAGTC | 3 cut(s) | 94, 140, 169 |
| Psp6I | CCWGG | 1 cut(s) | 441 |
| PspEI | GGTNACC | 1 cut(s) | 184 |
| PspGI | CCWGG | 1 cut(s) | 441 |
| PspN4I | GGNNCC | 3 cut(s) | 307, 389, 475 |
| PspPI | GGNCC | 1 cut(s) | 42 |
| PsuI | RGATCY | 1 cut(s) | 473 |
| RruI | TCGCGA | 1 cut(s) | 218 |
| RsaI | GTAC | 4 cut(s) | 281, 299, 389, 484 |
| RsaNI | GTAC | 4 cut(s) | 280, 298, 388, 483 |
| RseI | CAYNNNNRTG | 1 cut(s) | 323 |
| SaqAI | TTAA | 1 cut(s) | 165 |
| SatI | GCNGC | 4 cut(s) | 201, 336, 450, 453 |
| Sau3AI | GATC | 3 cut(s) | 247, 354, 473 |
| Sau96I | GGNCC | 1 cut(s) | 42 |
| SchI | GAGTC | 3 cut(s) | 95, 140, 169 |
| ScrFI | CCNGG | 2 cut(s) | 385, 443 |
| SduI | GDGCHC | 1 cut(s) | 308 |
| SetI | ASST | 8 cut(s) | 15, 30, 102, 132, 225, 281, 318, 393 |
| SfaNI | GCATC | 2 cut(s) | 84, 187 |
| SfcI | CTRYAG | 1 cut(s) | 489 |
| Sfr274I | CTCGAG | 1 cut(s) | 81 |
| SlaI | CTCGAG | 1 cut(s) | 81 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 323 |
| SmlI | CTYRAG | 5 cut(s) | 60, 81, 224, 339, 422 |
| SmoI | CTYRAG | 5 cut(s) | 60, 81, 224, 339, 422 |
| Sse9I | AATT | 1 cut(s) | 404 |
| SsiI | CCGC | 6 cut(s) | 40, 142, 200, 412, 449, 486 |
| SspMI | CTAG | 1 cut(s) | 392 |
| StyD4I | CCNGG | 2 cut(s) | 383, 441 |
| TaqI | TCGA | 1 cut(s) | 82 |
| TasI | AATT | 1 cut(s) | 404 |
| TatI | WGTACW | 1 cut(s) | 297 |
| TauI | GCSGC | 2 cut(s) | 203, 452 |
| TfiI | GAWTC | 1 cut(s) | 67 |
| Tru1I | TTAA | 1 cut(s) | 165 |
| Tru9I | TTAA | 1 cut(s) | 165 |
| TseI | GCWGC | 2 cut(s) | 335, 452 |
| TspDTI | ATGAA | 2 cut(s) | 374, 411 |
| XapI | RAATTY | 1 cut(s) | 404 |
| XhoI | CTCGAG | 1 cut(s) | 81 |
| XmnI | GAANNNNTTC | 1 cut(s) | 264 |
| XspI | CTAG | 1 cut(s) | 392 |