Rmu_sc0006444.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006444.1
OG0000087
Physical Location & Seq
Forward (+)
75718 .. 78005
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006444.1_g000020.1.cds

Sequence Viewer

Length: 1680 bp
atggtcttatatctggttaggctaacccttgtgcttctgattccagatatcgcgagttttgaggtccccggtatcatagttaggatggaatcagaaaccaggggtggggatacgggatcgtcgtaccagtcctctgccaggcaagctgaagtggatagcgatcggtacttagcccaagtagatcaattagcagagaataccggatcctcgactggggtgttctcggagagcagtgaggagtccgacgagggtgagagcgagggtggatctgcggaggccccggtagtcacggtggcaattctcgagggcatacagaagcctaggtatacacttgcggacgggaccgtatgcgacgaacccgggagaagtatggcgatgaaggagatcatcgtcatgcgactgaagtggggaatatcggacgcggtggagcttaggcctctcaaggatggagagatggccgcgaatcctgccccagggtgggtggcgctgcaagagaaccagttccaccaagggttatcgctaccgctgccccgtatgatggccatgtgggatttgtgccaacaagggtggccttccgtaaatgaattccgcgcggcctatactttatcagaggtagaaaggaagaggatagcccgagtatatgctgtttggacagagaaagagaggagctcttatagattcatccggcattctatactttataggctagggctaggatggctccccgtgaaagcgccgaagaggaaaccctggaaaggcaaagaggaggatagaatggatgatattcaattgatggatatgctgatgggccagggagaagacgcccttcacattgatgtcgacctagggtcgaagggtatgggtcggtccatggaagagaccctactggagatcactgatgcgggatatggggaacctgatcctgacgctcccgtgacccaagtcgtgcagccttctgctgctgacgtcatcacgatagctgataccgggatgggaaaggtaccggtctccgtgtctatttcttctcgctccactgggagcgatgaggcattgcttccagagtcgtcgctttcgcttgggttgttgtctcctgccattccggtaatccccaagaagcctatcaagcagctgttgagtgagtacggggttgctgatgaaaagttcttgcggtccatgcttagtgacctgaaggacattaacctcgaccgggtgcgggccaaggacaatacacccaaagaaaatcgccgcctcgcccgggaatccatgatgcgggcactcttcaatgtgtacgcgattgatggcagcaaggaagatactcatctgaaggaggaggttagcaatctctccgggcaggtgaagtatctgcatggtgagaaggccaagctggagaaggagcgggactcaatgattgccgagatggacgcggctaagcagcgaatcgtggagcttgaggagtctgccatgtcatggaaggagaaggcggactacctggaggatcgccttcccgtggagaagcacgaggccgtggaggagtacaagtcctcccaagagctcattgctatgctaactgctgctcaagataaggctgtcatcatgaagttcaaggagtgggtggcggccgggtacttggatgaagccaaattcaggcggggtcttcttgagaaaaagaagaaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

559

Amino Acids

62.31

Weight (kDa)

5.03

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1342
AatII GACGTC 1 cut(s) 969
Acc36I ACCTGC 1 cut(s) 1342
Acc65I GGTACC 1 cut(s) 1000
AccB1I GGYRCC 1 cut(s) 1000
AccB7I CCANNNNNTGG 1 cut(s) 1467
AccBSI CCGCTC 1 cut(s) 1396
AccI GTMKAC 2 cut(s) 326, 840
AccII CGCG 7 cut(s) 53, 422, 461, 591, 593, 1292, 1424
AclWI GGATC 6 cut(s) 124, 198, 211, 274, 914, 1503
AcoI YGGCCR 3 cut(s) 456, 540, 1617
AcsI RAATTY 2 cut(s) 584, 1640
AcuI CTGAAG 4 cut(s) 168, 422, 1208, 1343
AcyI GRCGYC 2 cut(s) 822, 966
AfaI GTAC 7 cut(s) 125, 167, 1002, 1142, 1289, 1535, 1625
AgeI ACCGGT 1 cut(s) 1003
AgsI TTSAA 3 cut(s) 788, 1282, 1603
AhdI GACNNNNNGTC 1 cut(s) 847
AjnI CCWGG 6 cut(s) 98, 137, 472, 749, 810, 1488
AluBI AGCT 8 cut(s) 146, 430, 669, 980, 1129, 1384, 1447, 1552
AluI AGCT 8 cut(s) 146, 430, 669, 980, 1129, 1384, 1447, 1552
Alw21I GWGCWC 2 cut(s) 671, 1554
Alw26I GTCTC 3 cut(s) 872, 1012, 1092
AlwI GGATC 6 cut(s) 124, 198, 211, 274, 914, 1503
Ama87I CYCGRG 4 cut(s) 302, 359, 633, 1254
ApeKI GCWGC 8 cut(s) 487, 526, 949, 959, 1126, 1302, 1432, 1571
ApoI RAATTY 2 cut(s) 584, 1640
AsiGI ACCGGT 1 cut(s) 1003
Asp700I GAANNNNTTC 1 cut(s) 500
Asp718I GGTACC 1 cut(s) 1000
AspA2I CCTAGG 2 cut(s) 320, 844
AspLEI GCGC 3 cut(s) 487, 593, 736
AspS9I GGNCC 7 cut(s) 64, 277, 342, 808, 867, 1170, 1215
AsuHPI GGTGA 3 cut(s) 263, 1366, 1382
AvaI CYCGRG 4 cut(s) 302, 359, 633, 1254
AvaII GGWCC 4 cut(s) 64, 342, 867, 1170
AvrII CCTAGG 2 cut(s) 320, 844
BaeGI GKGCMC 1 cut(s) 1276
BalI TGGCCA 1 cut(s) 542
BamHI GGATCC 1 cut(s) 203
BanI GGYRCC 1 cut(s) 1000
BanII GRGCYC 2 cut(s) 671, 1554
BarI GAAGNNNNNNTAC 4 cut(s) 867, 899, 1469, 1501
BauI CACGAG 1 cut(s) 1517
BbsI GAAGAC 2 cut(s) 825, 1646
Bbv12I GWGCWC 2 cut(s) 671, 1554
BbvI GCAGC 8 cut(s) 474, 513, 946, 961, 1138, 1314, 1444, 1558
BceAI ACGGC 1 cut(s) 1508
BciT130I CCWGG 6 cut(s) 100, 139, 474, 751, 812, 1490
BciVI GTATCC 1 cut(s) 103
BcoDI GTCTC 3 cut(s) 872, 1012, 1092
BfaI CTAG 4 cut(s) 321, 707, 713, 845
BfoI RGCGCY 2 cut(s) 488, 737
BfuAI ACCTGC 1 cut(s) 1342
BfuI GTATCC 1 cut(s) 103
BlnI CCTAGG 2 cut(s) 320, 844
BlpI GCTNAGC 1 cut(s) 1428
Bme18I GGWCC 4 cut(s) 64, 342, 867, 1170
BmeRI GACNNNNNGTC 1 cut(s) 847
BmeT110I CYCGRG 4 cut(s) 302, 359, 633, 1254
BmgT120I GGNCC 7 cut(s) 64, 277, 342, 808, 867, 1170, 1215
BmiI GGNNCC 7 cut(s) 66, 205, 279, 343, 722, 915, 1002
BmrI ACTGGG 2 cut(s) 222, 1044
BmsI GCATC 2 cut(s) 889, 1257
BmuI ACTGGG 2 cut(s) 222, 1044
BoxI GACNNNNGTC 1 cut(s) 941
BpiI GAAGAC 2 cut(s) 825, 1646
BplI GAGNNNNNCTC 4 cut(s) 653, 685, 1385, 1417
BpmI CTGGAG 3 cut(s) 908, 1406, 1511
Bpu10I CCTNAGC 1 cut(s) 431
Bpu1102I GCTNAGC 1 cut(s) 1428
BpuEI CTTGAG 4 cut(s) 425, 1469, 1560, 1679
BsaBI GATNNNNATC 2 cut(s) 159, 1317
BsaHI GRCGYC 2 cut(s) 822, 966
BsaI GGTCTC 2 cut(s) 872, 1012
BsaWI WCCGGW 3 cut(s) 200, 1003, 1099
BsaXI ACNNNNNCTCC 4 cut(s) 1523, 1526, 1553, 1556
Bse118I RCCGGY 1 cut(s) 1003
Bse1I ACTGG 5 cut(s) 127, 217, 499, 891, 1039
Bse3DI GCAATG 2 cut(s) 1049, 1554
Bse8I GATNNNNATC 2 cut(s) 159, 1317
BseBI CCWGG 6 cut(s) 100, 139, 474, 751, 812, 1490
BseGI GGATG 7 cut(s) 90, 451, 681, 722, 784, 996, 1636
BseJI GATNNNNATC 2 cut(s) 159, 1317
BseMI GCAATG 2 cut(s) 1049, 1554
BseNI ACTGG 5 cut(s) 127, 217, 499, 891, 1039
BseRI GAGGAG 6 cut(s) 251, 679, 779, 1343, 1466, 1544
BseSI GKGCMC 1 cut(s) 1276
BseX3I CGGCCG 1 cut(s) 1617
BseXI GCAGC 8 cut(s) 474, 513, 946, 961, 1138, 1314, 1444, 1558
BsgI GTGCAG 1 cut(s) 968
Bsh1236I CGCG 7 cut(s) 53, 422, 461, 591, 593, 1292, 1424
Bsh1285I CGRYCG 3 cut(s) 163, 1207, 1620
BshNI GGYRCC 1 cut(s) 1000
BshTI ACCGGT 1 cut(s) 1003
BsiEI CGRYCG 3 cut(s) 163, 1207, 1620
BsiHKAI GWGCWC 2 cut(s) 671, 1554
BsiHKCI CYCGRG 4 cut(s) 302, 359, 633, 1254
BslFI GGGAC 3 cut(s) 50, 355, 1412
BsmAI GTCTC 3 cut(s) 872, 1012, 1092
BsmFI GGGAC 3 cut(s) 50, 355, 1412
BsmI GAATGC 1 cut(s) 688
Bso31I GGTCTC 2 cut(s) 872, 1012
BsoBI CYCGRG 4 cut(s) 302, 359, 633, 1254
Bsp1286I GDGCHC 3 cut(s) 671, 1276, 1554
Bsp143I GATC 9 cut(s) 116, 160, 181, 203, 266, 384, 891, 919, 1495
Bsp1720I GCTNAGC 1 cut(s) 1428
Bsp19I CCATGG 1 cut(s) 870
Bsp68I TCGCGA 1 cut(s) 53
BspFNI CGCG 7 cut(s) 53, 422, 461, 591, 593, 1292, 1424
BspHI TCATGA 1 cut(s) 1593
BspLI GGNNCC 7 cut(s) 66, 205, 279, 343, 722, 915, 1002
BspMI ACCTGC 1 cut(s) 1342
BspPI GGATC 6 cut(s) 124, 198, 211, 274, 914, 1503
BspT107I GGYRCC 1 cut(s) 1000
BspTNI GGTCTC 2 cut(s) 872, 1012
BsrBI CCGCTC 1 cut(s) 1396
BsrDI GCAATG 2 cut(s) 1049, 1554
BsrFI RCCGGY 1 cut(s) 1003
BsrI ACTGG 5 cut(s) 127, 217, 499, 891, 1039
BssAI RCCGGY 1 cut(s) 1003
BssMI GATC 9 cut(s) 116, 160, 181, 203, 266, 384, 891, 919, 1495
BssNAI GTATAC 1 cut(s) 327
BssNI GRCGYC 2 cut(s) 822, 966
BssSI CACGAG 1 cut(s) 1517
BssT1I CCWWGG 5 cut(s) 320, 508, 844, 870, 1218
Bst1107I GTATAC 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 1517
Bst2UI CCWGG 6 cut(s) 100, 139, 474, 751, 812, 1490
Bst4CI ACNGT 2 cut(s) 292, 346
Bst6I CTCTTC 4 cut(s) 617, 734, 870, 1283
BstACI GRCGYC 2 cut(s) 822, 966
BstC8I GCNNGC 3 cut(s) 144, 1215, 1272
BstDEI CTNAG 4 cut(s) 169, 431, 1178, 1428
BstDSI CCRYGG 3 cut(s) 870, 1506, 1524
BstENI CCTNNNNNAGG 2 cut(s) 136, 471
BstF5I GGATG 7 cut(s) 90, 451, 681, 722, 784, 996, 1636
BstFNI CGCG 7 cut(s) 53, 422, 461, 591, 593, 1292, 1424
BstH2I RGCGCY 2 cut(s) 488, 737
BstHHI GCGC 3 cut(s) 487, 593, 736
BstKTI GATC 9 cut(s) 119, 163, 184, 206, 269, 387, 894, 922, 1498
BstMAI GTCTC 3 cut(s) 872, 1012, 1092
BstMBI GATC 9 cut(s) 116, 160, 181, 203, 266, 384, 891, 919, 1495
BstMCI CGRYCG 3 cut(s) 163, 1207, 1620
BstMWI GCNNNNNNNGC 6 cut(s) 143, 467, 526, 718, 1123, 1174
BstNI CCWGG 6 cut(s) 100, 139, 474, 751, 812, 1490
BstPAI GACNNNNGTC 1 cut(s) 941
BstSLI GKGCMC 1 cut(s) 1276
BstUI CGCG 7 cut(s) 53, 422, 461, 591, 593, 1292, 1424
BstV1I GCAGC 8 cut(s) 474, 513, 946, 961, 1138, 1314, 1444, 1558
BstV2I GAAGAC 2 cut(s) 825, 1646
BstX2I RGATCY 2 cut(s) 203, 266
BstYI RGATCY 2 cut(s) 203, 266
BstZ17I GTATAC 1 cut(s) 327
BstZI CGGCCG 1 cut(s) 1617
BsuI GTATCC 1 cut(s) 103
BtgI CCRYGG 3 cut(s) 870, 1506, 1524
BtgZI GCGATG 2 cut(s) 389, 1056
BtsCI GGATG 7 cut(s) 90, 451, 681, 722, 784, 996, 1636
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 3 cut(s) 238, 894, 1032
BtuMI TCGCGA 1 cut(s) 53
BveI ACCTGC 1 cut(s) 1342
Cac8I GCNNGC 3 cut(s) 144, 1215, 1272
CciI TCATGA 1 cut(s) 1593
CfoI GCGC 3 cut(s) 487, 593, 736
Cfr10I RCCGGY 1 cut(s) 1003
Cfr13I GGNCC 7 cut(s) 64, 277, 342, 808, 867, 1170, 1215
Cfr9I CCCGGG 2 cut(s) 359, 1254
CseI GACGC 4 cut(s) 428, 830, 935, 1430
Csp6I GTAC 7 cut(s) 124, 166, 1001, 1141, 1288, 1534, 1624
CspAI ACCGGT 1 cut(s) 1003
CspCI CAANNNNNGTGG 2 cut(s) 548, 583
CviAII CATG 9 cut(s) 394, 544, 871, 1174, 1264, 1367, 1462, 1467, 1594
CviQI GTAC 7 cut(s) 124, 166, 1001, 1141, 1288, 1534, 1624
DdeI CTNAG 4 cut(s) 169, 431, 1178, 1428
DpnI GATC 9 cut(s) 118, 162, 183, 205, 268, 386, 893, 921, 1497
DpnII GATC 9 cut(s) 116, 160, 181, 203, 266, 384, 891, 919, 1495
DriI GACNNNNNGTC 1 cut(s) 847
EaeI YGGCCR 3 cut(s) 456, 540, 1617
EagI CGGCCG 1 cut(s) 1617
Eam1104I CTCTTC 4 cut(s) 617, 734, 870, 1283
Eam1105I GACNNNNNGTC 1 cut(s) 847
EarI CTCTTC 4 cut(s) 617, 734, 870, 1283
EciI GGCGGA 1 cut(s) 1496
Ecl136II GAGCTC 2 cut(s) 669, 1552
EclXI CGGCCG 1 cut(s) 1617
Eco130I CCWWGG 5 cut(s) 320, 508, 844, 870, 1218
Eco147I AGGCCT 1 cut(s) 436
Eco24I GRGCYC 2 cut(s) 671, 1554
Eco31I GGTCTC 2 cut(s) 872, 1012
Eco32I GATATC 1 cut(s) 49
Eco47I GGWCC 4 cut(s) 64, 342, 867, 1170
Eco52I CGGCCG 1 cut(s) 1617
Eco53kI GAGCTC 2 cut(s) 669, 1552
Eco57I CTGAAG 4 cut(s) 168, 422, 1208, 1343
Eco88I CYCGRG 4 cut(s) 302, 359, 633, 1254
EcoICRI GAGCTC 2 cut(s) 669, 1552
EcoNI CCTNNNNNAGG 2 cut(s) 136, 471
EcoO109I RGGNCCY 2 cut(s) 64, 277
EcoRI GAATTC 1 cut(s) 584
EcoRII CCWGG 6 cut(s) 98, 137, 472, 749, 810, 1488
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 5 cut(s) 320, 508, 844, 870, 1218
EcoT38I GRGCYC 2 cut(s) 671, 1554
ErhI CCWWGG 5 cut(s) 320, 508, 844, 870, 1218
FaeI CATG 9 cut(s) 397, 547, 874, 1177, 1267, 1370, 1465, 1470, 1597
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FaqI GGGAC 3 cut(s) 50, 355, 1412
FatI CATG 9 cut(s) 393, 543, 870, 1173, 1263, 1366, 1461, 1466, 1593
FauI CCCGC 5 cut(s) 895, 1206, 1263, 1389, 1641
FblI GTMKAC 2 cut(s) 326, 840
FokI GGATG 7 cut(s) 97, 458, 668, 729, 791, 1003, 1643
FriOI GRGCYC 2 cut(s) 671, 1554
FspBI CTAG 4 cut(s) 321, 707, 713, 845
GlaI GCGC 3 cut(s) 486, 592, 735
GsuI CTGGAG 3 cut(s) 908, 1406, 1511
HaeII RGCGCY 2 cut(s) 488, 737
HgaI GACGC 4 cut(s) 428, 830, 935, 1430
HhaI GCGC 3 cut(s) 487, 593, 736
Hin1I GRCGYC 2 cut(s) 822, 966
Hin1II CATG 9 cut(s) 397, 547, 874, 1177, 1267, 1370, 1465, 1470, 1597
Hin6I GCGC 3 cut(s) 485, 591, 734
HinP1I GCGC 3 cut(s) 485, 591, 734
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HphI GGTGA 3 cut(s) 263, 1366, 1382
Hpy166II GTNNAC 3 cut(s) 327, 841, 1288
Hpy188I TCNGA 7 cut(s) 39, 94, 226, 244, 418, 610, 1323
Hpy188III TCNNGA 9 cut(s) 44, 52, 302, 923, 973, 1058, 1577, 1594, 1658
Hpy8I GTNNAC 3 cut(s) 327, 841, 1288
Hpy99I CGWCG 4 cut(s) 124, 248, 356, 1069
HpyCH4III ACNGT 2 cut(s) 292, 346
HpyCH4IV ACGT 1 cut(s) 966
HpyCH4V TGCA 3 cut(s) 490, 949, 1366
HpyF10VI GCNNNNNNNGC 6 cut(s) 143, 467, 526, 718, 1123, 1174
HpyF3I CTNAG 4 cut(s) 169, 431, 1178, 1428
HpySE526I ACGT 1 cut(s) 966
Hsp92I GRCGYC 2 cut(s) 822, 966
Hsp92II CATG 9 cut(s) 397, 547, 874, 1177, 1267, 1370, 1465, 1470, 1597
HspAI GCGC 3 cut(s) 485, 591, 734
KpnI GGTACC 1 cut(s) 1004
Kzo9I GATC 9 cut(s) 116, 160, 181, 203, 266, 384, 891, 919, 1495
LmnI GCTCC 8 cut(s) 427, 666, 726, 934, 1034, 1038, 1393, 1444
Lsp1109I GCAGC 8 cut(s) 474, 513, 946, 961, 1138, 1314, 1444, 1558
LweI GCATC 2 cut(s) 889, 1257
MaeI CTAG 4 cut(s) 321, 707, 713, 845
MaeII ACGT 1 cut(s) 966
MaeIII GTNAC 3 cut(s) 286, 934, 1181
MalI GATC 9 cut(s) 118, 162, 183, 205, 268, 386, 893, 921, 1497
MbiI CCGCTC 1 cut(s) 1396
MboI GATC 9 cut(s) 116, 160, 181, 203, 266, 384, 891, 919, 1495
MboII GAAGA 8 cut(s) 634, 751, 830, 887, 1014, 1270, 1322, 1646
MfeI CAATTG 1 cut(s) 788
MflI RGATCY 2 cut(s) 203, 266
MhlI GDGCHC 3 cut(s) 671, 1276, 1554
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 5 cut(s) 185, 297, 584, 788, 1640
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 4 cut(s) 248, 1070, 1394, 1463
MmeI TCCRAC 1 cut(s) 267
Mox20I TGGCCA 1 cut(s) 542
MroXI GAANNNNTTC 1 cut(s) 500
MscI TGGCCA 1 cut(s) 542
MseI TTAA 1 cut(s) 1197
MslI CAYNNNNRTG 3 cut(s) 392, 834, 1559
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 2 cut(s) 526, 1129
MunI CAATTG 1 cut(s) 788
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 6 cut(s) 100, 139, 474, 751, 812, 1490
MvnI CGCG 7 cut(s) 53, 422, 461, 591, 593, 1292, 1424
MwoI GCNNNNNNNGC 6 cut(s) 143, 467, 526, 718, 1123, 1174
NcoI CCATGG 1 cut(s) 870
NdeII GATC 9 cut(s) 116, 160, 181, 203, 266, 384, 891, 919, 1495
NlaIII CATG 9 cut(s) 397, 547, 874, 1177, 1267, 1370, 1465, 1470, 1597
NlaIV GGNNCC 7 cut(s) 66, 205, 279, 343, 722, 915, 1002
NmeAIII GCCGAG 1 cut(s) 1438
NmuCI GTSAC 3 cut(s) 286, 934, 1181
NruI TCGCGA 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 302
PagI TCATGA 1 cut(s) 1593
PaqCI CACCTGC 1 cut(s) 1342
PasI CCCWGGG 1 cut(s) 473
PceI AGGCCT 1 cut(s) 436
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PctI GAATGC 1 cut(s) 688
PdmI GAANNNNTTC 1 cut(s) 500
PfeI GAWTC 6 cut(s) 40, 89, 463, 678, 1259, 1437
PflMI CCANNNNNTGG 1 cut(s) 1467
PinAI ACCGGT 1 cut(s) 1003
Ple19I CGATCG 1 cut(s) 163
PleI GAGTC 4 cut(s) 247, 1069, 1394, 1462
PpsI GAGTC 4 cut(s) 247, 1069, 1394, 1462
PpuMI RGGWCCY 1 cut(s) 64
PshAI GACNNNNGTC 1 cut(s) 941
Psp124BI GAGCTC 2 cut(s) 671, 1554
Psp5II RGGWCCY 1 cut(s) 64
Psp6I CCWGG 6 cut(s) 98, 137, 472, 749, 810, 1488
PspGI CCWGG 6 cut(s) 98, 137, 472, 749, 810, 1488
PspN4I GGNNCC 7 cut(s) 66, 205, 279, 343, 722, 915, 1002
PspPI GGNCC 7 cut(s) 64, 277, 342, 808, 867, 1170, 1215
PspPPI RGGWCCY 1 cut(s) 64
PsuI RGATCY 2 cut(s) 203, 266
PvuI CGATCG 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 1129
RruI TCGCGA 1 cut(s) 53
RsaI GTAC 7 cut(s) 125, 167, 1002, 1142, 1289, 1535, 1625
RsaNI GTAC 7 cut(s) 124, 166, 1001, 1141, 1288, 1534, 1624
RseI CAYNNNNRTG 3 cut(s) 392, 834, 1559
SacI GAGCTC 2 cut(s) 671, 1554
SalI GTCGAC 1 cut(s) 839
SaqAI TTAA 1 cut(s) 1197
Sau3AI GATC 9 cut(s) 116, 160, 181, 203, 266, 384, 891, 919, 1495
Sau96I GGNCC 7 cut(s) 64, 277, 342, 808, 867, 1170, 1215
SchI GAGTC 4 cut(s) 248, 1070, 1394, 1463
SduI GDGCHC 3 cut(s) 671, 1276, 1554
SfaNI GCATC 2 cut(s) 889, 1257
Sfr274I CTCGAG 1 cut(s) 302
SinI GGWCC 4 cut(s) 64, 342, 867, 1170
SlaI CTCGAG 1 cut(s) 302
SmaI CCCGGG 2 cut(s) 361, 1256
SmiMI CAYNNNNRTG 3 cut(s) 392, 834, 1559
SmlI CTYRAG 5 cut(s) 302, 440, 1448, 1575, 1658
SmoI CTYRAG 5 cut(s) 302, 440, 1448, 1575, 1658
Sse9I AATT 5 cut(s) 185, 297, 584, 788, 1640
SseBI AGGCCT 1 cut(s) 436
SspMI CTAG 4 cut(s) 321, 707, 713, 845
SstI GAGCTC 2 cut(s) 671, 1554
StuI AGGCCT 1 cut(s) 436
StyI CCWWGG 5 cut(s) 320, 508, 844, 870, 1218
TaaI ACNGT 2 cut(s) 292, 346
TaiI ACGT 1 cut(s) 969
TaqI TCGA 5 cut(s) 209, 303, 840, 851, 1203
TaqII GACCGA 1 cut(s) 855
TasI AATT 5 cut(s) 185, 297, 584, 788, 1640
TatI WGTACW 1 cut(s) 1533
TauI GCSGC 5 cut(s) 461, 596, 1248, 1427, 1619
TfiI GAWTC 6 cut(s) 40, 89, 463, 678, 1259, 1437
Tru1I TTAA 1 cut(s) 1197
Tru9I TTAA 1 cut(s) 1197
TscAI CASTG 3 cut(s) 238, 901, 1039
TseFI GTSAC 3 cut(s) 286, 934, 1181
TseI GCWGC 8 cut(s) 487, 526, 949, 959, 1126, 1302, 1432, 1571
Tsp45I GTSAC 3 cut(s) 286, 934, 1181
TspDTI ATGAA 6 cut(s) 392, 597, 670, 1170, 1610, 1647
TspGWI ACGGA 2 cut(s) 565, 1000
TspMI CCCGGG 2 cut(s) 359, 1254
TspRI CASTG 3 cut(s) 238, 901, 1039
Van91I CCANNNNNTGG 1 cut(s) 1467
VpaK11BI GGWCC 4 cut(s) 64, 342, 867, 1170
XagI CCTNNNNNAGG 2 cut(s) 136, 471
XapI RAATTY 2 cut(s) 584, 1640
XhoI CTCGAG 1 cut(s) 302
XmaI CCCGGG 2 cut(s) 359, 1254
XmaJI CCTAGG 2 cut(s) 320, 844
XmiI GTMKAC 2 cut(s) 326, 840
XmnI GAANNNNTTC 1 cut(s) 500
XspI CTAG 4 cut(s) 321, 707, 713, 845
ZraI GACGTC 1 cut(s) 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.