Rmu_sc0008336.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008336.1
OG0000087
Physical Location & Seq
Reverse (-)
35079 .. 37279
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008336.1_g000011.1.cds

Sequence Viewer

Length: 1785 bp
atggaatcagaaaccaaggccggggatgtgggatcgtcgtatcaatcttccgtgagacaagcggaagcagatattgaccggtacctggctccaagtagtatccgtatggagttagcagagaacaccggatctttgactggggtgttctcggagagtagcgagggtaccgacggagatgaaagcggggacgacgctgaggaggcgcaagtagtcacggtggctattcctgagggcattcctaaacctaggtatacgctagtggacaggactgtgtgcgatgagcccgggagaagtatgaccatgaaggagatcattacgatgaggatgaagtggggaatatcggacgaggtagaacttaggcctctaaaggctggggagatggcagcgaatcctcctccgggatgggtggcgctgcacgagaaccaactccaccaagggctgtcattaccgctgcctctgtgcctacagtatctcttgcggatgctgaacctatcaccaaggcagttgactccgaatgcctggcggaaaattttgagtatgatggccatgtgggacttgtgccagcaagggtggcccaccattaacgaattccgagctatgtaccgggtcttatactcgaggaaacaatcttgtcaaggtacaacgatgtttgccaatcaggactacgagcctctagttaccaatatgcccacttctcaaagcaagaagtggaggaatcaagtatttctcgctggaggacattggcatattagaaataagaaatggtacttgacggtgaaagtaccgaaaaggaaaccctggaaaggtaaggaggacgacaagatgaatgataacaagctgatgcatatgcttatgagccaaggagaagatgcccttcacattggcgttgacctggggtcgaaggctacgggtcgctccatcaaagaatttcttctcgagattacagacgacaggtacgggaaccctgatcctaaagcggtcgttacccagagcaaacagcctcttgcaggggacatggttaccattgtcgatcccagaagaggaaaggcgccggtttcctgctctatctcttcccgatccgccgggtccactggaagagaggaagtcttgcttcctggtgagaagaagaggttccacaggcatctccatcggagcgggaacaaggaagaggttacctacactgtagtccccaagaagcccataaagcagctgttgagcgagtacggggttgccgacgagaggtttgtacgttcgatgctggccgatctgaaagacatagacctcgaccgagtacgggcgaaggacaactccccccaagaaaatcgtcgtatcgctcgagaatcaatgatgcgggcattattcaacgtctacgcgatcgacgctagtgaggaagatactcacttgaaggaagaggttagtaatctctccaggcaagtgaagtatcttcatggggagaaggcaaagctggagaaggagcgggactccttgaagagtaaggtagagtccttaactctcaaggttgccgagctggaggtggcgaagaagaggatcgcagagcttgagggtgaactggctggggtaagggatgagttaggaagtacccgggattccaagaaagaagctgatgaatctgctaagtcatggaaggaaaaggcaaagcatctggaggggcgccttcctattgaaaggcaggaggccgttgccgggtacaaaggctcccaagagcttgttgatatgctactcgttgctcagggcaaggctgtgatcatgaagtacaaagagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

594

Amino Acids

67.04

Weight (kDa)

8.3

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 81, 164
AccB1I GGYRCC 4 cut(s) 81, 164, 1048, 1671
AccBSI CCGCTC 2 cut(s) 1155, 1477
AccI GTMKAC 2 cut(s) 251, 1368
AccII CGCG 1 cut(s) 1373
AclWI GGATC 6 cut(s) 40, 136, 962, 1025, 1071, 1556
AcoI YGGCCR 2 cut(s) 543, 1260
AcsI RAATTY 3 cut(s) 528, 587, 926
AcyI GRCGYC 2 cut(s) 1049, 1672
AfiI CCNNNNNNNGG 9 cut(s) 21, 85, 398, 803, 1007, 1040, 1239, 1294, 1704
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 4 cut(s) 1363, 1405, 1489, 1685
AhdI GACNNNNNGTC 1 cut(s) 895
AjnI CCWGG 6 cut(s) 84, 518, 797, 891, 1114, 1427
AluBI AGCT 8 cut(s) 596, 838, 1210, 1465, 1528, 1558, 1622, 1726
AluI AGCT 8 cut(s) 596, 838, 1210, 1465, 1528, 1558, 1622, 1726
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 6 cut(s) 40, 136, 962, 1025, 1071, 1556
Ama87I CYCGRG 5 cut(s) 284, 616, 935, 1335, 1602
AoxI GGCC 6 cut(s) 18, 359, 543, 572, 1260, 1695
ApeKI GCWGC 4 cut(s) 383, 412, 451, 1207
ApoI RAATTY 3 cut(s) 528, 587, 926
ArsI GACNNNNNNTTYG 2 cut(s) 1226, 1258
AsiGI ACCGGT 1 cut(s) 78
Asp700I GAANNNNTTC 2 cut(s) 930, 1130
Asp718I GGTACC 2 cut(s) 81, 164
AspA2I CCTAGG 1 cut(s) 245
AspLEI GCGC 4 cut(s) 205, 412, 1051, 1674
AspS9I GGNCC 2 cut(s) 573, 1086
AsuC2I CCSGG 9 cut(s) 22, 285, 286, 399, 605, 1084, 1603, 1604, 1705
AsuHPI GGTGA 4 cut(s) 486, 787, 1130, 1577
AvaI CYCGRG 5 cut(s) 284, 616, 935, 1335, 1602
AvaII GGWCC 1 cut(s) 1086
AvrII CCTAGG 1 cut(s) 245
AxyI CCTNAGG 1 cut(s) 228
BalI TGGCCA 1 cut(s) 545
BanI GGYRCC 4 cut(s) 81, 164, 1048, 1671
BanII GRGCYC 1 cut(s) 285
BauI CACGAG 1 cut(s) 416
BbvCI CCTCAGC 1 cut(s) 195
BbvI GCAGC 4 cut(s) 395, 399, 438, 1219
BccI CCATC 5 cut(s) 373, 396, 535, 926, 1155
BceAI ACGGC 1 cut(s) 1682
BcgI CGANNNNNNTGC 2 cut(s) 1130, 1164
BciT130I CCWGG 6 cut(s) 86, 520, 799, 893, 1116, 1429
BciVI GTATCC 1 cut(s) 110
BclI TGATCA 1 cut(s) 1764
BcnI CCSGG 9 cut(s) 22, 285, 286, 399, 605, 1084, 1603, 1604, 1705
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 4 cut(s) 246, 257, 674, 1383
BfmI CTRYAG 2 cut(s) 464, 1182
BfoI RGCGCY 3 cut(s) 413, 1052, 1675
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 4 cut(s) 384, 413, 452, 1208
BlnI CCTAGG 1 cut(s) 245
BlsI GCNGC 4 cut(s) 385, 414, 453, 1209
Bme18I GGWCC 1 cut(s) 1086
BmeRI GACNNNNNGTC 1 cut(s) 895
BmeT110I CYCGRG 5 cut(s) 284, 616, 935, 1335, 1602
BmgT120I GGNCC 2 cut(s) 573, 1086
BmiI GGNNCC 9 cut(s) 83, 90, 166, 962, 1050, 1087, 1133, 1673, 1717
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 7 cut(s) 471, 831, 859, 1150, 1245, 1338, 1669
BmuI ACTGGG 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 1466, 1498
BpmI CTGGAG 5 cut(s) 753, 1411, 1487, 1550, 1685
Bpu10I CCTNAGC 2 cut(s) 195, 1749
BpuEI CTTGAG 2 cut(s) 1499, 1580
BpuMI CCSGG 9 cut(s) 22, 285, 286, 399, 605, 1084, 1603, 1604, 1705
BsaHI GRCGYC 2 cut(s) 1049, 1672
BsaWI WCCGGW 2 cut(s) 78, 125
BsaXI ACNNNNNCTCC 2 cut(s) 1700, 1730
Bsc4I CCNNNNNNNGG 9 cut(s) 21, 85, 398, 803, 1007, 1040, 1239, 1294, 1704
Bse118I RCCGGY 2 cut(s) 78, 1051
Bse1I ACTGG 3 cut(s) 142, 1096, 1575
Bse21I CCTNAGG 1 cut(s) 228
BseBI CCWGG 6 cut(s) 86, 520, 799, 893, 1116, 1429
BseGI GGATG 5 cut(s) 31, 330, 407, 486, 1591
BseLI CCNNNNNNNGG 9 cut(s) 21, 85, 398, 803, 1007, 1040, 1239, 1294, 1704
BseMII CTCAG 3 cut(s) 186, 219, 1763
BseNI ACTGG 3 cut(s) 142, 1096, 1575
BseRI GAGGAG 2 cut(s) 212, 384
BseXI GCAGC 4 cut(s) 395, 399, 438, 1219
BseYI CCCAGC 2 cut(s) 371, 1574
BsgI GTGCAG 1 cut(s) 398
Bsh1236I CGCG 1 cut(s) 1373
Bsh1285I CGRYCG 3 cut(s) 981, 1288, 1377
BshFI GGCC 6 cut(s) 20, 361, 545, 574, 1262, 1697
BshNI GGYRCC 4 cut(s) 81, 164, 1048, 1671
BshTI ACCGGT 1 cut(s) 78
BsiEI CGRYCG 3 cut(s) 981, 1288, 1377
BsiHKCI CYCGRG 5 cut(s) 284, 616, 935, 1335, 1602
BslFI GGGAC 5 cut(s) 200, 566, 1025, 1172, 1493
BslI CCNNNNNNNGG 9 cut(s) 21, 85, 398, 803, 1007, 1040, 1239, 1294, 1704
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 5 cut(s) 200, 566, 1025, 1172, 1493
BsmI GAATGC 2 cut(s) 234, 520
BsnI GGCC 6 cut(s) 20, 361, 545, 574, 1262, 1697
BsoBI CYCGRG 5 cut(s) 284, 616, 935, 1335, 1602
Bsp1286I GDGCHC 1 cut(s) 285
BspANI GGCC 6 cut(s) 20, 361, 545, 574, 1262, 1697
BspCNI CTCAG 3 cut(s) 187, 220, 1762
BspFNI CGCG 1 cut(s) 1373
BspHI TCATGA 1 cut(s) 1767
BspLI GGNNCC 9 cut(s) 83, 90, 166, 962, 1050, 1087, 1133, 1673, 1717
BspPI GGATC 6 cut(s) 40, 136, 962, 1025, 1071, 1556
BspT107I GGYRCC 4 cut(s) 81, 164, 1048, 1671
BsrBI CCGCTC 2 cut(s) 1155, 1477
BsrFI RCCGGY 2 cut(s) 78, 1051
BsrI ACTGG 3 cut(s) 142, 1096, 1575
BssAI RCCGGY 2 cut(s) 78, 1051
BssNAI GTATAC 1 cut(s) 252
BssNI GRCGYC 2 cut(s) 1049, 1672
BssSI CACGAG 1 cut(s) 416
BssT1I CCWWGG 5 cut(s) 15, 245, 433, 497, 859
Bst1107I GTATAC 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 416
Bst2UI CCWGG 6 cut(s) 86, 520, 799, 893, 1116, 1429
Bst4CI ACNGT 5 cut(s) 217, 271, 468, 775, 1183
Bst6I CTCTTC 8 cut(s) 1033, 1075, 1090, 1121, 1161, 1404, 1484, 1538
BstACI GRCGYC 2 cut(s) 1049, 1672
BstC8I GCNNGC 3 cut(s) 563, 1260, 1353
BstDEI CTNAG 5 cut(s) 195, 228, 356, 1635, 1749
BstEII GGTNACC 2 cut(s) 1018, 1171
BstENI CCTNNNNNAGG 1 cut(s) 1005
BstF5I GGATG 5 cut(s) 31, 330, 407, 486, 1591
BstFNI CGCG 1 cut(s) 1373
BstH2I RGCGCY 3 cut(s) 413, 1052, 1675
BstHHI GCGC 4 cut(s) 205, 412, 1051, 1674
BstMAI GTCTC 1 cut(s) 49
BstMCI CGRYCG 3 cut(s) 981, 1288, 1377
BstMWI GCNNNNNNNGC 4 cut(s) 200, 571, 1204, 1379
BstNI CCWGG 6 cut(s) 86, 520, 799, 893, 1116, 1429
BstPI GGTNACC 2 cut(s) 1018, 1171
BstSFI CTRYAG 2 cut(s) 464, 1182
BstUI CGCG 1 cut(s) 1373
BstV1I GCAGC 4 cut(s) 395, 399, 438, 1219
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BstZ17I GTATAC 1 cut(s) 252
Bsu36I CCTNAGG 1 cut(s) 228
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 6 cut(s) 20, 361, 545, 574, 1262, 1697
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 5 cut(s) 31, 330, 407, 486, 1591
BtsIMutI CAGTG 2 cut(s) 1089, 1179
Cac8I GCNNGC 3 cut(s) 563, 1260, 1353
CciI TCATGA 1 cut(s) 1767
CfoI GCGC 4 cut(s) 205, 412, 1051, 1674
Cfr10I RCCGGY 2 cut(s) 78, 1051
Cfr13I GGNCC 2 cut(s) 573, 1086
Cfr9I CCCGGG 2 cut(s) 284, 1602
CseI GACGC 2 cut(s) 200, 1388
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 6 cut(s) 301, 547, 1015, 1448, 1641, 1768
DdeI CTNAG 5 cut(s) 195, 228, 356, 1635, 1749
DinI GGCGCC 2 cut(s) 1050, 1673
DriI GACNNNNNGTC 1 cut(s) 895
EaeI YGGCCR 2 cut(s) 543, 1260
Eam1104I CTCTTC 8 cut(s) 1033, 1075, 1090, 1121, 1161, 1404, 1484, 1538
Eam1105I GACNNNNNGTC 1 cut(s) 895
EarI CTCTTC 8 cut(s) 1033, 1075, 1090, 1121, 1161, 1404, 1484, 1538
EciI GGCGGA 2 cut(s) 538, 1069
Eco130I CCWWGG 5 cut(s) 15, 245, 433, 497, 859
Eco147I AGGCCT 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 1086
Eco81I CCTNAGG 1 cut(s) 228
Eco88I CYCGRG 5 cut(s) 284, 616, 935, 1335, 1602
Eco91I GGTNACC 2 cut(s) 1018, 1171
EcoNI CCTNNNNNAGG 1 cut(s) 1005
EcoO65I GGTNACC 2 cut(s) 1018, 1171
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 6 cut(s) 84, 518, 797, 891, 1114, 1427
EcoT14I CCWWGG 5 cut(s) 15, 245, 433, 497, 859
EcoT22I ATGCAT 1 cut(s) 846
EcoT38I GRGCYC 1 cut(s) 285
EgeI GGCGCC 2 cut(s) 1050, 1673
EheI GGCGCC 2 cut(s) 1050, 1673
ErhI CCWWGG 5 cut(s) 15, 245, 433, 497, 859
FaeI CATG 6 cut(s) 304, 550, 1018, 1451, 1644, 1771
FalI AAGNNNNNCTT 6 cut(s) 858, 890, 915, 947, 1095, 1127
FaqI GGGAC 5 cut(s) 200, 566, 1025, 1172, 1493
FatI CATG 6 cut(s) 300, 546, 1014, 1447, 1640, 1767
FauI CCCGC 4 cut(s) 176, 1148, 1344, 1470
FauNDI CATATG 1 cut(s) 846
FbaI TGATCA 1 cut(s) 1764
FblI GTMKAC 2 cut(s) 251, 1368
Fnu4HI GCNGC 4 cut(s) 384, 413, 452, 1208
FokI GGATG 5 cut(s) 38, 337, 414, 493, 1598
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 4 cut(s) 384, 413, 452, 1208
FspBI CTAG 4 cut(s) 246, 257, 674, 1383
GlaI GCGC 4 cut(s) 204, 411, 1050, 1673
GluI GCNGC 4 cut(s) 384, 413, 452, 1208
GsaI CCCAGC 2 cut(s) 375, 1578
GsuI CTGGAG 5 cut(s) 753, 1411, 1487, 1550, 1685
HaeII RGCGCY 3 cut(s) 413, 1052, 1675
HaeIII GGCC 6 cut(s) 20, 361, 545, 574, 1262, 1697
HgaI GACGC 2 cut(s) 200, 1388
HhaI GCGC 4 cut(s) 205, 412, 1051, 1674
Hin1I GRCGYC 2 cut(s) 1049, 1672
Hin1II CATG 6 cut(s) 304, 550, 1018, 1451, 1644, 1771
Hin6I GCGC 4 cut(s) 203, 410, 1049, 1672
HinP1I GCGC 4 cut(s) 203, 410, 1049, 1672
HincII GTYRAC 2 cut(s) 507, 889
HindII GTYRAC 2 cut(s) 507, 889
HinfI GANTC 9 cut(s) 5, 388, 508, 715, 1340, 1481, 1502, 1607, 1628
HphI GGTGA 4 cut(s) 486, 787, 1130, 1577
Hpy166II GTNNAC 7 cut(s) 252, 262, 507, 889, 1089, 1369, 1568
Hpy188I TCNGA 7 cut(s) 10, 151, 343, 513, 593, 1152, 1269
Hpy188III TCNNGA 8 cut(s) 227, 659, 935, 937, 1074, 1337, 1664, 1768
Hpy8I GTNNAC 7 cut(s) 252, 262, 507, 889, 1089, 1369, 1568
Hpy99I CGWCG 6 cut(s) 40, 173, 194, 1238, 1329, 1382
HpyAV CCTTC 9 cut(s) 298, 884, 895, 1294, 1399, 1450, 1465, 1639, 1685
HpyCH4III ACNGT 5 cut(s) 217, 271, 468, 775, 1183
HpyCH4IV ACGT 2 cut(s) 1249, 1365
HpyCH4V TGCA 3 cut(s) 415, 844, 1007
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 571, 1204, 1379
HpyF3I CTNAG 5 cut(s) 195, 228, 356, 1635, 1749
HpySE526I ACGT 2 cut(s) 1249, 1365
Hsp92I GRCGYC 2 cut(s) 1049, 1672
Hsp92II CATG 6 cut(s) 304, 550, 1018, 1451, 1644, 1771
HspAI GCGC 4 cut(s) 203, 410, 1049, 1672
KasI GGCGCC 2 cut(s) 1048, 1671
KpnI GGTACC 2 cut(s) 85, 168
Ksp22I TGATCA 1 cut(s) 1764
LmnI GCTCC 5 cut(s) 94, 920, 1152, 1474, 1721
Lsp1109I GCAGC 4 cut(s) 395, 399, 438, 1219
LweI GCATC 7 cut(s) 471, 831, 859, 1150, 1245, 1338, 1669
MaeI CTAG 4 cut(s) 246, 257, 674, 1383
MaeII ACGT 2 cut(s) 1249, 1365
MaeIII GTNAC 5 cut(s) 211, 676, 982, 1018, 1171
MbiI CCGCTC 2 cut(s) 1155, 1477
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 3 cut(s) 528, 587, 926
MluNI TGGCCA 1 cut(s) 545
Mly113I GGCGCC 2 cut(s) 1049, 1672
MlyI GAGTC 3 cut(s) 502, 1475, 1511
Mox20I TGGCCA 1 cut(s) 545
Mph1103I ATGCAT 1 cut(s) 846
MroXI GAANNNNTTC 2 cut(s) 930, 1130
MscI TGGCCA 1 cut(s) 545
MseI TTAA 2 cut(s) 582, 1508
MslI CAYNNNNRTG 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 545
MspA1I CMGCKG 2 cut(s) 451, 1210
Mva1269I GAATGC 2 cut(s) 234, 520
MvaI CCWGG 6 cut(s) 86, 520, 799, 893, 1116, 1429
MvnI CGCG 1 cut(s) 1373
MwoI GCNNNNNNNGC 4 cut(s) 200, 571, 1204, 1379
NarI GGCGCC 2 cut(s) 1049, 1672
NciI CCSGG 9 cut(s) 22, 285, 286, 399, 605, 1084, 1603, 1604, 1705
NdeI CATATG 1 cut(s) 846
NlaIII CATG 6 cut(s) 304, 550, 1018, 1451, 1644, 1771
NlaIV GGNNCC 9 cut(s) 83, 90, 166, 962, 1050, 1087, 1133, 1673, 1717
NmeAIII GCCGAG 1 cut(s) 1549
NmuCI GTSAC 1 cut(s) 211
NsiI ATGCAT 1 cut(s) 846
PaeR7I CTCGAG 3 cut(s) 616, 935, 1335
PagI TCATGA 1 cut(s) 1767
PceI AGGCCT 1 cut(s) 361
PcsI WCGNNNNNNNCGW 2 cut(s) 1230, 1333
PctI GAATGC 2 cut(s) 234, 520
PdmI GAANNNNTTC 2 cut(s) 930, 1130
PfeI GAWTC 6 cut(s) 5, 388, 715, 1340, 1607, 1628
PfoI TCCNGGA 1 cut(s) 397
PinAI ACCGGT 1 cut(s) 78
PkrI GCNGC 4 cut(s) 385, 414, 453, 1209
Ple19I CGATCG 1 cut(s) 1377
PleI GAGTC 3 cut(s) 502, 1475, 1510
PluTI GGCGCC 2 cut(s) 1052, 1675
PpsI GAGTC 3 cut(s) 502, 1475, 1510
Psp6I CCWGG 6 cut(s) 84, 518, 797, 891, 1114, 1427
PspEI GGTNACC 2 cut(s) 1018, 1171
PspFI CCCAGC 2 cut(s) 371, 1574
PspGI CCWGG 6 cut(s) 84, 518, 797, 891, 1114, 1427
PspN4I GGNNCC 9 cut(s) 83, 90, 166, 962, 1050, 1087, 1133, 1673, 1717
PspPI GGNCC 2 cut(s) 573, 1086
PspXI VCTCGAGB 1 cut(s) 616
PsuI RGATCY 1 cut(s) 128
PvuI CGATCG 1 cut(s) 1377
PvuII CAGCTG 1 cut(s) 1210
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 2 cut(s) 582, 1508
SatI GCNGC 4 cut(s) 384, 413, 452, 1208
Sau96I GGNCC 2 cut(s) 573, 1086
SchI GAGTC 3 cut(s) 502, 1475, 1511
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 7 cut(s) 471, 831, 859, 1150, 1245, 1338, 1669
SfcI CTRYAG 2 cut(s) 464, 1182
SfoI GGCGCC 2 cut(s) 1050, 1673
Sfr274I CTCGAG 3 cut(s) 616, 935, 1335
SinI GGWCC 1 cut(s) 1086
SlaI CTCGAG 3 cut(s) 616, 935, 1335
SmaI CCCGGG 2 cut(s) 286, 1604
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 5 cut(s) 616, 935, 1335, 1514, 1559
SmoI CTYRAG 5 cut(s) 616, 935, 1335, 1514, 1559
Sse9I AATT 3 cut(s) 528, 587, 926
SseBI AGGCCT 1 cut(s) 361
SspDI GGCGCC 2 cut(s) 1048, 1671
SspMI CTAG 4 cut(s) 246, 257, 674, 1383
StuI AGGCCT 1 cut(s) 361
StyI CCWWGG 5 cut(s) 15, 245, 433, 497, 859
TaaI ACNGT 5 cut(s) 217, 271, 468, 775, 1183
TaiI ACGT 2 cut(s) 1252, 1368
TaqI TCGA 8 cut(s) 617, 899, 936, 1029, 1253, 1284, 1336, 1377
TaqII GACCGA 1 cut(s) 1302
TasI AATT 3 cut(s) 528, 587, 926
TatI WGTACW 1 cut(s) 1773
TfiI GAWTC 6 cut(s) 5, 388, 715, 1340, 1607, 1628
Tru1I TTAA 2 cut(s) 582, 1508
Tru9I TTAA 2 cut(s) 582, 1508
TscAI CASTG 2 cut(s) 1096, 1186
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 4 cut(s) 383, 412, 451, 1207
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 7 cut(s) 192, 317, 341, 839, 1436, 1641, 1784
TspGWI ACGGA 3 cut(s) 40, 92, 186
TspMI CCCGGG 2 cut(s) 284, 1602
TspRI CASTG 2 cut(s) 1096, 1186
VpaK11BI GGWCC 1 cut(s) 1086
XagI CCTNNNNNAGG 1 cut(s) 1005
XapI RAATTY 3 cut(s) 528, 587, 926
XhoI CTCGAG 3 cut(s) 616, 935, 1335
XmaI CCCGGG 2 cut(s) 284, 1602
XmaJI CCTAGG 1 cut(s) 245
XmiI GTMKAC 2 cut(s) 251, 1368
XmnI GAANNNNTTC 2 cut(s) 930, 1130
XspI CTAG 4 cut(s) 246, 257, 674, 1383
Zsp2I ATGCAT 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.