Rmu_sc0003063.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003063.1
OG0000087
Physical Location & Seq
Reverse (-)
86402 .. 88350
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003063.1_g000022.1.cds

Sequence Viewer

Length: 1287 bp
atgctgaacctgtcaccggggcagctaaacccgaatgccgttcttcaaatatgcagtatgatggccatgtgggacctgtgccagcaagggtggccctccataaatgagttccgcgcgggattacgagccgctagttaccgatatgcctacctcgatgagcaaaagtcctatacgctatccgaagtggaaaagaagaggatagcccgggtatatgccgtgtggtcagagaaagagaggagctcttataggttcatccggcactctatactttttaggctagggttagggtggctccccgtgaaagccccgaagaggaaaccctggaaaggcaaggaggaggataggatgaatgatgctcaattaatggacatgctgataagccagggagaagatgccctgcacatcgacgtcgacctagtgtcgaaaggcacgagtcggtctattgaagagaccctgttggagattactgatgagggatacggtgaacctgatcccgacgcccttgtgacccgcgccgcgcagccctccatggccgatgtcattacgatagctgacaccggggtgggaaaagtaccggcctcagtgcccatttcctctcgttccactgggagcgatgaggtgttactccccggtgagaagaagagatcccacaagcaccggcatcgaactgataaggaggtgacgtacactggccgggatgtccagggtaccggcgcaaagaggcagaagaaagatcacccgggaccagggccgtcaccctctcttggcttgttgtctcctgccgttccggtaatccccaagaagcccatcaagcagctgctaaatgaatacggggttgccgatgaaaaattcgtgctgtccatgcttggggatctgaaggacattgacctcgaccgggttcgagccaaggataatactccccaggagaatcgccgtctcgcccgggagttgatgatgcaggcactcttcaatgtgtacgccatcgacgccagcgaggaagatactcatctgaaggaggaggttagcaacctctccgggcaggatcgccttcccgcggagaggcacgaggccgtggaggagtacaagtcctcggatgagctgattgctatgctggctgctgcccaagataaggctgtcatcatgaagtttaaggagtgggtggcggccgggtacttagatgaagccaaatttaggcggggtctcctggagaaaaagaagaaggagcaggaggcggcggccaaattcggtgccggtgggtctcagagtaccgatggagatcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

428

Amino Acids

47.83

Weight (kDa)

6.5

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 411
Acc65I GGTACC 1 cut(s) 707
AccB1I GGYRCC 2 cut(s) 707, 1247
AccI GTMKAC 1 cut(s) 411
AccII CGCG 5 cut(s) 114, 116, 513, 518, 1055
AclWI GGATC 4 cut(s) 485, 639, 879, 1050
AcoI YGGCCR 5 cut(s) 63, 531, 691, 1164, 1236
AcsI RAATTY 3 cut(s) 848, 1187, 1241
AcuI CTGAAG 2 cut(s) 896, 1031
AcyI GRCGYC 3 cut(s) 408, 498, 987
AfaI GTAC 7 cut(s) 573, 686, 709, 977, 1082, 1172, 1267
AgsI TTSAA 3 cut(s) 47, 446, 970
AhdI GACNNNNNGTC 1 cut(s) 418
AjnI CCWGG 6 cut(s) 320, 381, 702, 745, 921, 1203
AleI CACNNNNGTG 1 cut(s) 560
AluBI AGCT 5 cut(s) 25, 240, 551, 817, 1099
AluI AGCT 5 cut(s) 25, 240, 551, 817, 1099
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 5 cut(s) 443, 780, 941, 1205, 1263
AlwI GGATC 4 cut(s) 485, 639, 879, 1050
Ama87I CYCGRG 3 cut(s) 204, 739, 942
AoxI GGCC 9 cut(s) 63, 92, 531, 576, 691, 749, 1068, 1164, 1236
ApeKI GCWGC 6 cut(s) 22, 520, 814, 817, 1115, 1118
ApoI RAATTY 3 cut(s) 848, 1187, 1241
AseI ATTAAT 1 cut(s) 362
Asp718I GGTACC 1 cut(s) 707
AspLEI GCGC 4 cut(s) 116, 515, 520, 716
AspS9I GGNCC 4 cut(s) 73, 93, 743, 749
AsuHPI GGTGA 6 cut(s) 6, 494, 644, 691, 728, 747
AvaI CYCGRG 3 cut(s) 204, 739, 942
AvaII GGWCC 2 cut(s) 73, 743
BaeGI GKGCMC 1 cut(s) 588
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 2 cut(s) 707, 1247
BanII GRGCYC 1 cut(s) 242
BauI CACGAG 2 cut(s) 430, 1064
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 6 cut(s) 34, 532, 804, 826, 1102, 1105
BccI CCATC 4 cut(s) 55, 815, 989, 1265
BceAI ACGGC 6 cut(s) 23, 200, 736, 767, 918, 1055
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 6 cut(s) 322, 383, 704, 747, 923, 1205
BciVI GTATCC 1 cut(s) 470
BcoDI GTCTC 5 cut(s) 443, 780, 941, 1205, 1263
BfaI CTAG 3 cut(s) 132, 278, 416
BfuI GTATCC 1 cut(s) 470
Bme18I GGWCC 2 cut(s) 73, 743
BmeRI GACNNNNNGTC 1 cut(s) 418
BmeT110I CYCGRG 3 cut(s) 204, 739, 942
BmgT120I GGNCC 4 cut(s) 73, 93, 743, 749
BmiI GGNNCC 5 cut(s) 74, 293, 709, 744, 1249
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 4 cut(s) 343, 382, 670, 945
BmuI ACTGGG 1 cut(s) 615
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 1 cut(s) 1226
BsaBI GATNNNNATC 2 cut(s) 1005, 1275
BsaHI GRCGYC 3 cut(s) 408, 498, 987
BsaI GGTCTC 3 cut(s) 443, 1205, 1263
BsaWI WCCGGW 1 cut(s) 787
BsaXI ACNNNNNCTCC 4 cut(s) 668, 698, 1070, 1100
Bse118I RCCGGY 4 cut(s) 574, 657, 710, 1250
Bse1I ACTGG 2 cut(s) 610, 694
Bse8I GATNNNNATC 2 cut(s) 1005, 1275
BseBI CCWGG 6 cut(s) 322, 383, 704, 747, 923, 1205
BseGI GGATG 4 cut(s) 252, 351, 703, 1099
BseJI GATNNNNATC 2 cut(s) 1005, 1275
BseMII CTCAG 2 cut(s) 594, 1274
BseNI ACTGG 2 cut(s) 610, 694
BseRI GAGGAG 4 cut(s) 250, 350, 1031, 1091
BseSI GKGCMC 1 cut(s) 588
BseX3I CGGCCG 1 cut(s) 1164
BseXI GCAGC 6 cut(s) 34, 532, 804, 826, 1102, 1105
BsgI GTGCAG 1 cut(s) 383
Bsh1236I CGCG 5 cut(s) 114, 116, 513, 518, 1055
Bsh1285I CGRYCG 2 cut(s) 895, 1167
BshFI GGCC 9 cut(s) 65, 94, 533, 578, 693, 751, 1070, 1166, 1238
BshNI GGYRCC 2 cut(s) 707, 1247
BsiEI CGRYCG 2 cut(s) 895, 1167
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 3 cut(s) 204, 739, 942
BslFI GGGAC 2 cut(s) 86, 756
BsmAI GTCTC 5 cut(s) 443, 780, 941, 1205, 1263
BsmBI CGTCTC 1 cut(s) 941
BsmFI GGGAC 2 cut(s) 86, 756
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 9 cut(s) 65, 94, 533, 578, 693, 751, 1070, 1166, 1238
Bso31I GGTCTC 3 cut(s) 443, 1205, 1263
BsoBI CYCGRG 3 cut(s) 204, 739, 942
Bsp1286I GDGCHC 2 cut(s) 242, 588
Bsp143I GATC 6 cut(s) 490, 644, 733, 871, 1042, 1276
Bsp19I CCATGG 1 cut(s) 528
BspANI GGCC 9 cut(s) 65, 94, 533, 578, 693, 751, 1070, 1166, 1238
BspCNI CTCAG 2 cut(s) 593, 1273
BspFNI CGCG 5 cut(s) 114, 116, 513, 518, 1055
BspHI TCATGA 1 cut(s) 1140
BspLI GGNNCC 5 cut(s) 74, 293, 709, 744, 1249
BspPI GGATC 4 cut(s) 485, 639, 879, 1050
BspT107I GGYRCC 2 cut(s) 707, 1247
BspTNI GGTCTC 3 cut(s) 443, 1205, 1263
BsrFI RCCGGY 4 cut(s) 574, 657, 710, 1250
BsrI ACTGG 2 cut(s) 610, 694
BssAI RCCGGY 4 cut(s) 574, 657, 710, 1250
BssMI GATC 6 cut(s) 490, 644, 733, 871, 1042, 1276
BssNI GRCGYC 3 cut(s) 408, 498, 987
BssSI CACGAG 2 cut(s) 430, 1064
BssT1I CCWWGG 2 cut(s) 528, 906
Bst2BI CACGAG 2 cut(s) 430, 1064
Bst2UI CCWGG 6 cut(s) 322, 383, 704, 747, 923, 1205
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 5 cut(s) 188, 305, 441, 635, 971
BstACI GRCGYC 3 cut(s) 408, 498, 987
BstC8I GCNNGC 4 cut(s) 83, 960, 991, 1113
BstDEI CTNAG 3 cut(s) 580, 1174, 1260
BstDSI CCRYGG 3 cut(s) 528, 1053, 1071
BstF5I GGATG 4 cut(s) 252, 351, 703, 1099
BstFNI CGCG 5 cut(s) 114, 116, 513, 518, 1055
BstHHI GCGC 4 cut(s) 116, 515, 520, 716
BstKTI GATC 6 cut(s) 493, 647, 736, 874, 1045, 1279
BstMAI GTCTC 5 cut(s) 443, 780, 941, 1205, 1263
BstMBI GATC 6 cut(s) 490, 644, 733, 871, 1042, 1276
BstMCI CGRYCG 2 cut(s) 895, 1167
BstMWI GCNNNNNNNGC 5 cut(s) 91, 811, 862, 986, 1112
BstNI CCWGG 6 cut(s) 322, 383, 704, 747, 923, 1205
BstNSI RCATGY 1 cut(s) 373
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 5 cut(s) 114, 116, 513, 518, 1055
BstV1I GCAGC 6 cut(s) 34, 532, 804, 826, 1102, 1105
BstX2I RGATCY 2 cut(s) 644, 871
BstYI RGATCY 2 cut(s) 644, 871
BstZI CGGCCG 1 cut(s) 1164
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 9 cut(s) 65, 94, 533, 578, 693, 751, 1070, 1166, 1238
BtgI CCRYGG 3 cut(s) 528, 1053, 1071
BtgZI GCGATG 1 cut(s) 627
BtsCI GGATG 4 cut(s) 252, 351, 703, 1099
BtsIMutI CAGTG 3 cut(s) 588, 603, 687
Cac8I GCNNGC 4 cut(s) 83, 960, 991, 1113
CciI TCATGA 1 cut(s) 1140
CfoI GCGC 4 cut(s) 116, 515, 520, 716
Cfr10I RCCGGY 4 cut(s) 574, 657, 710, 1250
Cfr13I GGNCC 4 cut(s) 73, 93, 743, 749
Cfr42I CCGCGG 1 cut(s) 1056
Cfr9I CCCGGG 3 cut(s) 204, 739, 942
CseI GACGC 2 cut(s) 506, 995
Csp6I GTAC 7 cut(s) 572, 685, 708, 976, 1081, 1171, 1266
CviAII CATG 5 cut(s) 67, 370, 529, 862, 1141
CviQI GTAC 7 cut(s) 572, 685, 708, 976, 1081, 1171, 1266
DdeI CTNAG 3 cut(s) 580, 1174, 1260
DpnI GATC 6 cut(s) 492, 646, 735, 873, 1044, 1278
DpnII GATC 6 cut(s) 490, 644, 733, 871, 1042, 1276
DriI GACNNNNNGTC 1 cut(s) 418
EaeI YGGCCR 5 cut(s) 63, 531, 691, 1164, 1236
EagI CGGCCG 1 cut(s) 1164
Eam1104I CTCTTC 5 cut(s) 188, 305, 441, 635, 971
Eam1105I GACNNNNNGTC 1 cut(s) 418
EarI CTCTTC 5 cut(s) 188, 305, 441, 635, 971
Ecl136II GAGCTC 1 cut(s) 240
EclXI CGGCCG 1 cut(s) 1164
Eco130I CCWWGG 2 cut(s) 528, 906
Eco24I GRGCYC 1 cut(s) 242
Eco31I GGTCTC 3 cut(s) 443, 1205, 1263
Eco47I GGWCC 2 cut(s) 73, 743
Eco52I CGGCCG 1 cut(s) 1164
Eco53kI GAGCTC 1 cut(s) 240
Eco57I CTGAAG 2 cut(s) 896, 1031
Eco88I CYCGRG 3 cut(s) 204, 739, 942
EcoICRI GAGCTC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 73
EcoRII CCWGG 6 cut(s) 320, 381, 702, 745, 921, 1203
EcoT14I CCWWGG 2 cut(s) 528, 906
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 2 cut(s) 528, 906
Esp3I CGTCTC 1 cut(s) 941
FaeI CATG 5 cut(s) 70, 373, 532, 865, 1144
FaqI GGGAC 2 cut(s) 86, 756
FatI CATG 5 cut(s) 66, 369, 528, 861, 1140
FauI CCCGC 4 cut(s) 109, 518, 1060, 1188
FblI GTMKAC 1 cut(s) 411
FokI GGATG 4 cut(s) 239, 358, 710, 1106
FriOI GRGCYC 1 cut(s) 242
FspBI CTAG 3 cut(s) 132, 278, 416
GlaI GCGC 4 cut(s) 115, 514, 519, 715
GsuI CTGGAG 1 cut(s) 1226
HaeIII GGCC 9 cut(s) 65, 94, 533, 578, 693, 751, 1070, 1166, 1238
HgaI GACGC 2 cut(s) 506, 995
HhaI GCGC 4 cut(s) 116, 515, 520, 716
Hin1I GRCGYC 3 cut(s) 408, 498, 987
Hin1II CATG 5 cut(s) 70, 373, 532, 865, 1144
Hin6I GCGC 4 cut(s) 114, 513, 518, 714
HinP1I GCGC 4 cut(s) 114, 513, 518, 714
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 2 cut(s) 433, 928
HphI GGTGA 6 cut(s) 6, 494, 644, 691, 728, 747
Hpy166II GTNNAC 4 cut(s) 412, 485, 687, 976
Hpy188I TCNGA 6 cut(s) 181, 226, 876, 1011, 1093, 1263
Hpy188III TCNNGA 2 cut(s) 494, 1141
Hpy8I GTNNAC 4 cut(s) 412, 485, 687, 976
Hpy99I CGWCG 4 cut(s) 410, 413, 500, 989
HpyAV CCTTC 4 cut(s) 871, 1006, 1058, 1213
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 2 cut(s) 408, 683
HpyCH4V TGCA 3 cut(s) 54, 400, 958
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 811, 862, 986, 1112
HpyF3I CTNAG 3 cut(s) 580, 1174, 1260
HpySE526I ACGT 2 cut(s) 408, 683
Hsp92I GRCGYC 3 cut(s) 408, 498, 987
Hsp92II CATG 5 cut(s) 70, 373, 532, 865, 1144
HspAI GCGC 4 cut(s) 114, 513, 518, 714
KpnI GGTACC 1 cut(s) 711
KspI CCGCGG 1 cut(s) 1056
Kzo9I GATC 6 cut(s) 490, 644, 733, 871, 1042, 1276
LmnI GCTCC 4 cut(s) 237, 297, 609, 1222
Lsp1109I GCAGC 6 cut(s) 34, 532, 804, 826, 1102, 1105
LweI GCATC 4 cut(s) 343, 382, 670, 945
MaeI CTAG 3 cut(s) 132, 278, 416
MaeII ACGT 2 cut(s) 408, 683
MaeIII GTNAC 6 cut(s) 12, 134, 505, 621, 679, 753
MalI GATC 6 cut(s) 492, 646, 735, 873, 1044, 1278
MboI GATC 6 cut(s) 490, 644, 733, 871, 1042, 1276
MflI RGATCY 2 cut(s) 644, 871
MhlI GDGCHC 2 cut(s) 242, 588
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 4 cut(s) 359, 848, 1187, 1241
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 442
MmeI TCCRAC 1 cut(s) 438
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 2 cut(s) 362, 1149
MslI CAYNNNNRTG 1 cut(s) 560
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 2 cut(s) 817, 1055
MteI GCGCNGCGC 1 cut(s) 516
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 6 cut(s) 322, 383, 704, 747, 923, 1205
MvnI CGCG 5 cut(s) 114, 116, 513, 518, 1055
MwoI GCNNNNNNNGC 5 cut(s) 91, 811, 862, 986, 1112
NcoI CCATGG 1 cut(s) 528
NdeII GATC 6 cut(s) 490, 644, 733, 871, 1042, 1276
NlaIII CATG 5 cut(s) 70, 373, 532, 865, 1144
NlaIV GGNNCC 5 cut(s) 74, 293, 709, 744, 1249
NmuCI GTSAC 4 cut(s) 12, 505, 679, 753
NspI RCATGY 1 cut(s) 373
OliI CACNNNNGTG 1 cut(s) 560
PagI TCATGA 1 cut(s) 1140
PcsI WCGNNNNNNNCGW 3 cut(s) 428, 837, 990
PctI GAATGC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 928
PfoI TCCNGGA 1 cut(s) 1203
PleI GAGTC 1 cut(s) 441
PpsI GAGTC 1 cut(s) 441
PpuMI RGGWCCY 1 cut(s) 73
PshBI ATTAAT 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 73
Psp6I CCWGG 6 cut(s) 320, 381, 702, 745, 921, 1203
PspGI CCWGG 6 cut(s) 320, 381, 702, 745, 921, 1203
PspN4I GGNNCC 5 cut(s) 74, 293, 709, 744, 1249
PspPI GGNCC 4 cut(s) 73, 93, 743, 749
PspPPI RGGWCCY 1 cut(s) 73
PsuI RGATCY 2 cut(s) 644, 871
PvuII CAGCTG 1 cut(s) 817
RsaI GTAC 7 cut(s) 573, 686, 709, 977, 1082, 1172, 1267
RsaNI GTAC 7 cut(s) 572, 685, 708, 976, 1081, 1171, 1266
RseI CAYNNNNRTG 1 cut(s) 560
SacI GAGCTC 1 cut(s) 242
SacII CCGCGG 1 cut(s) 1056
SalI GTCGAC 1 cut(s) 410
SaqAI TTAA 2 cut(s) 362, 1149
Sau3AI GATC 6 cut(s) 490, 644, 733, 871, 1042, 1276
Sau96I GGNCC 4 cut(s) 73, 93, 743, 749
SchI GAGTC 1 cut(s) 442
SduI GDGCHC 2 cut(s) 242, 588
SfaNI GCATC 4 cut(s) 343, 382, 670, 945
Sfr303I CCGCGG 1 cut(s) 1056
SgrBI CCGCGG 1 cut(s) 1056
SinI GGWCC 2 cut(s) 73, 743
SmaI CCCGGG 3 cut(s) 206, 741, 944
SmiMI CAYNNNNRTG 1 cut(s) 560
Sse9I AATT 4 cut(s) 359, 848, 1187, 1241
SspMI CTAG 3 cut(s) 132, 278, 416
SstI GAGCTC 1 cut(s) 242
StyI CCWWGG 2 cut(s) 528, 906
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 2 cut(s) 411, 686
TaqI TCGA 8 cut(s) 153, 405, 411, 422, 664, 891, 901, 984
TaqII GACCGA 1 cut(s) 426
TasI AATT 4 cut(s) 359, 848, 1187, 1241
TatI WGTACW 1 cut(s) 1080
TauI GCSGC 5 cut(s) 131, 518, 1166, 1235, 1238
TfiI GAWTC 1 cut(s) 928
Tru1I TTAA 2 cut(s) 362, 1149
Tru9I TTAA 2 cut(s) 362, 1149
TscAI CASTG 3 cut(s) 588, 610, 694
TseFI GTSAC 4 cut(s) 12, 505, 679, 753
TseI GCWGC 6 cut(s) 22, 520, 814, 817, 1115, 1118
Tsp45I GTSAC 4 cut(s) 12, 505, 679, 753
TspDTI ATGAA 6 cut(s) 241, 362, 840, 858, 1157, 1194
TspMI CCCGGG 3 cut(s) 204, 739, 942
TspRI CASTG 3 cut(s) 588, 610, 694
VpaK11BI GGWCC 2 cut(s) 73, 743
VspI ATTAAT 1 cut(s) 362
XapI RAATTY 3 cut(s) 848, 1187, 1241
XceI RCATGY 1 cut(s) 373
XmaI CCCGGG 3 cut(s) 204, 739, 942
XmiI GTMKAC 1 cut(s) 411
XspI CTAG 3 cut(s) 132, 278, 416
ZraI GACGTC 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.