Rmu_sc0004152.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004152.1
OG0000087
Physical Location & Seq
Reverse (-)
2743 .. 4486
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004152.1_g000002.1.cds

Sequence Viewer

Length: 1248 bp
atgggatcctcgactggggtgttctcggagagcagtgaggagtccgacgagggtgagagcgaggatggatctgtggaggccccggtagtcacggtggcaattcccgagggcataccgaagcctaggtatacacttgcggatgggaccgtatgcgacgaacccgagagaagtatgacaatgaaggagatcatcgccatacgactgaagtggggaataccagactcggtgcagctgaccgtgaaagcgccgaagaggaaaccccggaaaggcaaagaggaggacagaatggatgatgatcagttgatggatatgctaatgggccaaggagaggacgcccttcacatcgatgttgacctagggtcgaagggtatgggtcggtctgttgtagagaccctactggagatcatcgatgtgggatatggggaacctgatcctgacgctcccgtgacccaagtcgtgcagccctctgttgttgatgtcatcacgatagatgataccgagacgggaaaggtaccggcccctgtgtctatttcctctcgctccactgggaccgatgaggcattgcttccaggtgagaagaaaagatctcataggcaccggcatcgaagtgataagcaggaggtgacgtacaccggccgggatgttcagggatccggtgcgaagaggcagaagaaagatcacacgggaccagagtcgtcgccctcgcttggcttgttgtcacctgccattccagtaatccccaagaagcctatcaagcagctgttgagtgagtacggggttgccgatgaaaagttcgtgcggtccatgcttagtgacctgaaagacattaacctcgacccggtgcgggccaaggacaacacgcccaaagagaatcgccgtctcgcccgggaatccatgatgcgggcactcttcaatgtgtacgcgattgacgccagcgaggaagatactcatctaaaggaggaggttagcaatctctccgggcaggagaaggcagactacctggaggatcgccttcccgtggagaagcacgaggccgtggaggagtacaagtcctcccaagagctcattgctatgctaactgctgctcaagataaggctgtcatcatgaagttcaaggagtgggtggcggccgggtacctggatgaagccaaattcaggcagggtcttctggagaaaaagaagaaagatcgggaggtggcgatcaagtctggtgccgctgggtcccagagtaccggtggcgagcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

45.6

Weight (kDa)

5.05

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 730
Acc36I ACCTGC 1 cut(s) 730
Acc65I GGTACC 2 cut(s) 511, 1134
AccB1I GGYRCC 4 cut(s) 511, 594, 1134, 1211
AccI GTMKAC 1 cut(s) 128
AccII CGCG 1 cut(s) 923
AciI CCGC 6 cut(s) 137, 799, 844, 901, 1127, 1215
AclWI GGATC 6 cut(s) 13, 76, 425, 645, 658, 1014
AcoI YGGCCR 2 cut(s) 634, 1128
AcsI RAATTY 1 cut(s) 1151
AcuI CTGAAG 1 cut(s) 224
AcyI GRCGYC 2 cut(s) 333, 930
AfaI GTAC 7 cut(s) 513, 629, 773, 920, 1046, 1136, 1231
AfiI CCNNNNNNNGG 9 cut(s) 15, 266, 328, 707, 838, 844, 900, 1018, 1155
AgeI ACCGGT 1 cut(s) 1232
AgsI TTSAA 2 cut(s) 913, 1114
AhdI GACNNNNNGTC 1 cut(s) 358
AjnI CCWGG 3 cut(s) 568, 999, 1137
AluBI AGCT 3 cut(s) 232, 760, 1063
AluI AGCT 3 cut(s) 232, 760, 1063
Alw21I GWGCWC 1 cut(s) 1065
Alw26I GTCTC 3 cut(s) 383, 494, 884
AlwI GGATC 6 cut(s) 13, 76, 425, 645, 658, 1014
Ama87I CYCGRG 3 cut(s) 104, 161, 885
AoxI GGCC 7 cut(s) 78, 319, 516, 634, 846, 1032, 1128
ApeKI GCWGC 4 cut(s) 229, 460, 757, 1082
ApoI RAATTY 1 cut(s) 1151
AsiGI ACCGGT 1 cut(s) 1232
Asp718I GGTACC 2 cut(s) 511, 1134
AspA2I CCTAGG 2 cut(s) 122, 355
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 9 cut(s) 79, 144, 319, 517, 549, 686, 801, 846, 1221
AsuC2I CCSGG 8 cut(s) 83, 262, 638, 839, 886, 887, 979, 1132
AsuHPI GGTGA 4 cut(s) 65, 584, 634, 711
AvaI CYCGRG 3 cut(s) 104, 161, 885
AvaII GGWCC 5 cut(s) 144, 549, 686, 801, 1221
AvrII CCTAGG 2 cut(s) 122, 355
BaeGI GKGCMC 1 cut(s) 907
BamHI GGATCC 2 cut(s) 5, 650
BanI GGYRCC 4 cut(s) 511, 594, 1134, 1211
BanII GRGCYC 1 cut(s) 1065
BarI GAAGNNNNNNTAC 2 cut(s) 980, 1012
BauI CACGAG 1 cut(s) 1028
BbsI GAAGAC 1 cut(s) 1157
Bbv12I GWGCWC 1 cut(s) 1065
BbvI GCAGC 4 cut(s) 241, 472, 769, 1069
BccI CCATC 3 cut(s) 59, 134, 298
BceAI ACGGC 2 cut(s) 861, 1019
BcgI CGANNNNNNTGC 2 cut(s) 584, 618
BciT130I CCWGG 3 cut(s) 570, 1001, 1139
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 8 cut(s) 83, 262, 638, 839, 886, 887, 979, 1132
BcoDI GTCTC 3 cut(s) 383, 494, 884
BfaI CTAG 2 cut(s) 123, 356
BfoI RGCGCY 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 730
BglII AGATCT 1 cut(s) 584
BisI GCNGC 6 cut(s) 230, 461, 758, 1083, 1128, 1215
BlnI CCTAGG 2 cut(s) 122, 355
BlsI GCNGC 6 cut(s) 231, 462, 759, 1084, 1129, 1216
Bme18I GGWCC 5 cut(s) 144, 549, 686, 801, 1221
BmeRI GACNNNNNGTC 1 cut(s) 358
BmeT110I CYCGRG 3 cut(s) 104, 161, 885
BmgT120I GGNCC 9 cut(s) 79, 144, 319, 517, 549, 686, 801, 846, 1221
BmrI ACTGGG 2 cut(s) 24, 555
BmsI GCATC 2 cut(s) 610, 888
BmuI ACTGGG 2 cut(s) 24, 555
BoxI GACNNNNGTC 2 cut(s) 452, 691
BpiI GAAGAC 1 cut(s) 1157
BpmI CTGGAG 3 cut(s) 419, 1022, 1190
BpuEI CTTGAG 1 cut(s) 1071
BpuMI CCSGG 8 cut(s) 83, 262, 638, 839, 886, 887, 979, 1132
Bsa29I ATCGAT 2 cut(s) 345, 408
BsaBI GATNNNNATC 2 cut(s) 294, 948
BsaHI GRCGYC 2 cut(s) 333, 930
BsaI GGTCTC 1 cut(s) 383
BsaWI WCCGGW 2 cut(s) 653, 1232
BsaXI ACNNNNNCTCC 6 cut(s) 611, 641, 1034, 1037, 1064, 1067
Bsc4I CCNNNNNNNGG 9 cut(s) 15, 266, 328, 707, 838, 844, 900, 1018, 1155
Bse118I RCCGGY 4 cut(s) 514, 597, 632, 1232
Bse1I ACTGG 4 cut(s) 19, 402, 550, 731
Bse3DI GCAATG 2 cut(s) 560, 1065
Bse8I GATNNNNATC 2 cut(s) 294, 948
BseBI CCWGG 3 cut(s) 570, 1001, 1139
BseCI ATCGAT 2 cut(s) 345, 408
BseGI GGATG 5 cut(s) 70, 145, 295, 646, 1147
BseJI GATNNNNATC 2 cut(s) 294, 948
BseLI CCNNNNNNNGG 9 cut(s) 15, 266, 328, 707, 838, 844, 900, 1018, 1155
BseMI GCAATG 2 cut(s) 560, 1065
BseNI ACTGG 4 cut(s) 19, 402, 550, 731
BseRI GAGGAG 4 cut(s) 53, 290, 974, 1055
BseSI GKGCMC 1 cut(s) 907
BseX3I CGGCCG 2 cut(s) 634, 1128
BseXI GCAGC 4 cut(s) 241, 472, 769, 1069
BseYI CCCAGC 1 cut(s) 1217
BsgI GTGCAG 2 cut(s) 248, 479
Bsh1236I CGCG 1 cut(s) 923
Bsh1285I CGRYCG 2 cut(s) 637, 1131
BshFI GGCC 7 cut(s) 80, 321, 518, 636, 848, 1034, 1130
BshNI GGYRCC 4 cut(s) 511, 594, 1134, 1211
BshTI ACCGGT 1 cut(s) 1232
BshVI ATCGAT 2 cut(s) 345, 408
BsiEI CGRYCG 2 cut(s) 637, 1131
BsiHKAI GWGCWC 1 cut(s) 1065
BsiHKCI CYCGRG 3 cut(s) 104, 161, 885
BslFI GGGAC 4 cut(s) 157, 562, 699, 1207
BslI CCNNNNNNNGG 9 cut(s) 15, 266, 328, 707, 838, 844, 900, 1018, 1155
BsmAI GTCTC 3 cut(s) 383, 494, 884
BsmBI CGTCTC 2 cut(s) 494, 884
BsmFI GGGAC 4 cut(s) 157, 562, 699, 1207
BsnI GGCC 7 cut(s) 80, 321, 518, 636, 848, 1034, 1130
Bso31I GGTCTC 1 cut(s) 383
BsoBI CYCGRG 3 cut(s) 104, 161, 885
Bsp1286I GDGCHC 2 cut(s) 907, 1065
BspACI CCGC 6 cut(s) 137, 799, 844, 901, 1127, 1215
BspANI GGCC 7 cut(s) 80, 321, 518, 636, 848, 1034, 1130
BspDI ATCGAT 2 cut(s) 345, 408
BspFNI CGCG 1 cut(s) 923
BspHI TCATGA 1 cut(s) 1104
BspMI ACCTGC 1 cut(s) 730
BspPI GGATC 6 cut(s) 13, 76, 425, 645, 658, 1014
BspT107I GGYRCC 4 cut(s) 511, 594, 1134, 1211
BspTNI GGTCTC 1 cut(s) 383
BsrDI GCAATG 2 cut(s) 560, 1065
BsrFI RCCGGY 4 cut(s) 514, 597, 632, 1232
BsrI ACTGG 4 cut(s) 19, 402, 550, 731
BssAI RCCGGY 4 cut(s) 514, 597, 632, 1232
BssNAI GTATAC 1 cut(s) 129
BssNI GRCGYC 2 cut(s) 333, 930
BssSI CACGAG 1 cut(s) 1028
BssT1I CCWWGG 4 cut(s) 122, 322, 355, 849
Bst1107I GTATAC 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 1028
Bst2UI CCWGG 3 cut(s) 570, 1001, 1139
Bst4CI ACNGT 3 cut(s) 94, 148, 238
Bst6I CTCTTC 3 cut(s) 245, 656, 914
BstACI GRCGYC 2 cut(s) 333, 930
BstC8I GCNNGC 4 cut(s) 846, 903, 934, 1241
BstDEI CTNAG 1 cut(s) 809
BstDSI CCRYGG 2 cut(s) 1017, 1035
BstF5I GGATG 5 cut(s) 70, 145, 295, 646, 1147
BstFNI CGCG 1 cut(s) 923
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstMAI GTCTC 3 cut(s) 383, 494, 884
BstMCI CGRYCG 2 cut(s) 637, 1131
BstMWI GCNNNNNNNGC 3 cut(s) 754, 805, 929
BstNI CCWGG 3 cut(s) 570, 1001, 1139
BstPAI GACNNNNGTC 2 cut(s) 452, 691
BstSLI GKGCMC 1 cut(s) 907
BstUI CGCG 1 cut(s) 923
BstV1I GCAGC 4 cut(s) 241, 472, 769, 1069
BstV2I GAAGAC 1 cut(s) 1157
BstX2I RGATCY 4 cut(s) 5, 68, 584, 650
BstYI RGATCY 4 cut(s) 5, 68, 584, 650
BstZ17I GTATAC 1 cut(s) 129
BstZI CGGCCG 2 cut(s) 634, 1128
Bsu15I ATCGAT 2 cut(s) 345, 408
BsuRI GGCC 7 cut(s) 80, 321, 518, 636, 848, 1034, 1130
BsuTUI ATCGAT 2 cut(s) 345, 408
BtgI CCRYGG 2 cut(s) 1017, 1035
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 5 cut(s) 70, 145, 295, 646, 1147
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 2 cut(s) 40, 543
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 4 cut(s) 846, 903, 934, 1241
CciI TCATGA 1 cut(s) 1104
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 4 cut(s) 514, 597, 632, 1232
Cfr13I GGNCC 9 cut(s) 79, 144, 319, 517, 549, 686, 801, 846, 1221
Cfr9I CCCGGG 1 cut(s) 885
ClaI ATCGAT 2 cut(s) 345, 408
CseI GACGC 3 cut(s) 341, 446, 938
Csp6I GTAC 7 cut(s) 512, 628, 772, 919, 1045, 1135, 1230
CspAI ACCGGT 1 cut(s) 1232
CviAII CATG 3 cut(s) 805, 895, 1105
CviQI GTAC 7 cut(s) 512, 628, 772, 919, 1045, 1135, 1230
DdeI CTNAG 1 cut(s) 809
DriI GACNNNNNGTC 1 cut(s) 358
EaeI YGGCCR 2 cut(s) 634, 1128
EagI CGGCCG 2 cut(s) 634, 1128
Eam1104I CTCTTC 3 cut(s) 245, 656, 914
Eam1105I GACNNNNNGTC 1 cut(s) 358
EarI CTCTTC 3 cut(s) 245, 656, 914
Ecl136II GAGCTC 1 cut(s) 1063
EclXI CGGCCG 2 cut(s) 634, 1128
Eco130I CCWWGG 4 cut(s) 122, 322, 355, 849
Eco24I GRGCYC 1 cut(s) 1065
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 5 cut(s) 144, 549, 686, 801, 1221
Eco52I CGGCCG 2 cut(s) 634, 1128
Eco53kI GAGCTC 1 cut(s) 1063
Eco57I CTGAAG 1 cut(s) 224
Eco88I CYCGRG 3 cut(s) 104, 161, 885
EcoICRI GAGCTC 1 cut(s) 1063
EcoO109I RGGNCCY 2 cut(s) 79, 1221
EcoRII CCWGG 3 cut(s) 568, 999, 1137
EcoT14I CCWWGG 4 cut(s) 122, 322, 355, 849
EcoT38I GRGCYC 1 cut(s) 1065
ErhI CCWWGG 4 cut(s) 122, 322, 355, 849
Esp3I CGTCTC 2 cut(s) 494, 884
FaeI CATG 3 cut(s) 808, 898, 1108
FaqI GGGAC 4 cut(s) 157, 562, 699, 1207
FatI CATG 3 cut(s) 804, 894, 1104
FauI CCCGC 2 cut(s) 837, 894
FbaI TGATCA 1 cut(s) 295
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 6 cut(s) 230, 461, 758, 1083, 1128, 1215
FokI GGATG 5 cut(s) 77, 152, 302, 653, 1154
FriOI GRGCYC 1 cut(s) 1065
Fsp4HI GCNGC 6 cut(s) 230, 461, 758, 1083, 1128, 1215
FspBI CTAG 2 cut(s) 123, 356
GlaI GCGC 1 cut(s) 246
GluI GCNGC 6 cut(s) 230, 461, 758, 1083, 1128, 1215
GsaI CCCAGC 1 cut(s) 1221
GsuI CTGGAG 3 cut(s) 419, 1022, 1190
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 7 cut(s) 80, 321, 518, 636, 848, 1034, 1130
HgaI GACGC 3 cut(s) 341, 446, 938
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 2 cut(s) 333, 930
Hin1II CATG 3 cut(s) 808, 898, 1108
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 5 cut(s) 41, 221, 692, 871, 890
HphI GGTGA 4 cut(s) 65, 584, 634, 711
Hpy166II GTNNAC 4 cut(s) 129, 352, 630, 919
Hpy188I TCNGA 2 cut(s) 28, 46
Hpy188III TCNNGA 7 cut(s) 104, 434, 484, 1088, 1105, 1169, 1190
Hpy8I GTNNAC 4 cut(s) 129, 352, 630, 919
Hpy99I CGWCG 3 cut(s) 50, 158, 700
HpyAV CCTTC 5 cut(s) 175, 347, 358, 982, 1022
HpyCH4III ACNGT 3 cut(s) 94, 148, 238
HpyCH4IV ACGT 1 cut(s) 626
HpyCH4V TGCA 2 cut(s) 229, 460
HpyF10VI GCNNNNNNNGC 3 cut(s) 754, 805, 929
HpyF3I CTNAG 1 cut(s) 809
HpySE526I ACGT 1 cut(s) 626
Hsp92I GRCGYC 2 cut(s) 333, 930
Hsp92II CATG 3 cut(s) 808, 898, 1108
HspAI GCGC 1 cut(s) 245
KflI GGGWCCC 1 cut(s) 1221
KpnI GGTACC 2 cut(s) 515, 1138
Ksp22I TGATCA 1 cut(s) 295
LmnI GCTCC 2 cut(s) 445, 545
Lsp1109I GCAGC 4 cut(s) 241, 472, 769, 1069
LweI GCATC 2 cut(s) 610, 888
MaeI CTAG 2 cut(s) 123, 356
MaeII ACGT 1 cut(s) 626
MaeIII GTNAC 5 cut(s) 88, 445, 622, 717, 812
MboII GAAGA 8 cut(s) 262, 589, 673, 682, 901, 953, 1157, 1192
MflI RGATCY 4 cut(s) 5, 68, 584, 650
MhlI GDGCHC 2 cut(s) 907, 1065
MluCI AATT 2 cut(s) 99, 1151
MlyI GAGTC 3 cut(s) 50, 215, 701
MmeI TCCRAC 1 cut(s) 69
MseI TTAA 1 cut(s) 828
MslI CAYNNNNRTG 4 cut(s) 345, 410, 606, 1070
MspA1I CMGCKG 3 cut(s) 232, 760, 1217
MvaI CCWGG 3 cut(s) 570, 1001, 1139
MvnI CGCG 1 cut(s) 923
MwoI GCNNNNNNNGC 3 cut(s) 754, 805, 929
NciI CCSGG 8 cut(s) 83, 262, 638, 839, 886, 887, 979, 1132
NlaIII CATG 3 cut(s) 808, 898, 1108
NmuCI GTSAC 5 cut(s) 88, 445, 622, 717, 812
PagI TCATGA 1 cut(s) 1104
PaqCI CACCTGC 1 cut(s) 730
PcsI WCGNNNNNNNCGW 1 cut(s) 780
PfeI GAWTC 2 cut(s) 871, 890
PinAI ACCGGT 1 cut(s) 1232
PkrI GCNGC 6 cut(s) 231, 462, 759, 1084, 1129, 1216
PleI GAGTC 3 cut(s) 49, 215, 700
PpsI GAGTC 3 cut(s) 49, 215, 700
PpuMI RGGWCCY 1 cut(s) 1221
PshAI GACNNNNGTC 2 cut(s) 452, 691
Psp124BI GAGCTC 1 cut(s) 1065
Psp5II RGGWCCY 1 cut(s) 1221
Psp6I CCWGG 3 cut(s) 568, 999, 1137
PspFI CCCAGC 1 cut(s) 1217
PspGI CCWGG 3 cut(s) 568, 999, 1137
PspPI GGNCC 9 cut(s) 79, 144, 319, 517, 549, 686, 801, 846, 1221
PspPPI RGGWCCY 1 cut(s) 1221
PsuI RGATCY 4 cut(s) 5, 68, 584, 650
PvuII CAGCTG 2 cut(s) 232, 760
RsaI GTAC 7 cut(s) 513, 629, 773, 920, 1046, 1136, 1231
RsaNI GTAC 7 cut(s) 512, 628, 772, 919, 1045, 1135, 1230
RseI CAYNNNNRTG 4 cut(s) 345, 410, 606, 1070
SacI GAGCTC 1 cut(s) 1065
SaqAI TTAA 1 cut(s) 828
SatI GCNGC 6 cut(s) 230, 461, 758, 1083, 1128, 1215
Sau96I GGNCC 9 cut(s) 79, 144, 319, 517, 549, 686, 801, 846, 1221
SchI GAGTC 3 cut(s) 50, 215, 701
SduI GDGCHC 2 cut(s) 907, 1065
SfaNI GCATC 2 cut(s) 610, 888
SinI GGWCC 5 cut(s) 144, 549, 686, 801, 1221
SmaI CCCGGG 1 cut(s) 887
SmiMI CAYNNNNRTG 4 cut(s) 345, 410, 606, 1070
SmlI CTYRAG 1 cut(s) 1086
SmoI CTYRAG 1 cut(s) 1086
Sse9I AATT 2 cut(s) 99, 1151
SsiI CCGC 6 cut(s) 137, 799, 844, 901, 1127, 1215
SspMI CTAG 2 cut(s) 123, 356
SstI GAGCTC 1 cut(s) 1065
StyI CCWWGG 4 cut(s) 122, 322, 355, 849
TaaI ACNGT 3 cut(s) 94, 148, 238
TaiI ACGT 1 cut(s) 629
TaqI TCGA 6 cut(s) 11, 345, 362, 408, 604, 834
TaqII GACCGA 2 cut(s) 366, 566
TasI AATT 2 cut(s) 99, 1151
TatI WGTACW 1 cut(s) 1044
TauI GCSGC 2 cut(s) 1130, 1217
TfiI GAWTC 2 cut(s) 871, 890
Tru1I TTAA 1 cut(s) 828
Tru9I TTAA 1 cut(s) 828
TscAI CASTG 2 cut(s) 40, 550
TseFI GTSAC 5 cut(s) 88, 445, 622, 717, 812
TseI GCWGC 4 cut(s) 229, 460, 757, 1082
Tsp45I GTSAC 5 cut(s) 88, 445, 622, 717, 812
TspDTI ATGAA 4 cut(s) 194, 801, 1121, 1158
TspMI CCCGGG 1 cut(s) 885
TspRI CASTG 2 cut(s) 40, 550
VpaK11BI GGWCC 5 cut(s) 144, 549, 686, 801, 1221
XapI RAATTY 1 cut(s) 1151
XcmI CCANNNNNNNNNTGG 1 cut(s) 1232
XmaI CCCGGG 1 cut(s) 885
XmaJI CCTAGG 2 cut(s) 122, 355
XmiI GTMKAC 1 cut(s) 128
XspI CTAG 2 cut(s) 123, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.