Rmu_sc0000381.1_g000029

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000381.1
OG0000087
Physical Location & Seq
Reverse (-)
142715 .. 144349
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000381.1_g000029.1.cds

Sequence Viewer

Length: 1254 bp
atgtctgggtttttctgggctttggttaggctaacccttgtgcttttggttccagatatagcaaggtttgaggtccccggtaccgtagttaggatggaatcagaagccaggggtggggatacgggatcgtcgtaccagtcttctgcccggcaagccgaggtggatatcgaccggtacttaggccgggtagatcaattagcagagaacacggggtcctcgactagggtgttctcggagagtagtgaggagtctgacgagggtgagagcgagggtggatccgcggaggccccaatagtcacagtggccattcctgagggcattccgaagccgaggtacacacttgcgaatgggaccgtatgcgacgaaccctggagaagtatgacgatgaaggagatcattgacctgcgattgatgtggggaataccggacgcggtggagcttaggcctcttagggatggggaactggccgcgaatcttgccccggggtgggtggcgctgcacgagaatcagctccaccaagggttatcgctaccgctgccccggtgcctacagtatctgctgcggatactgaacctgtcaccggggcagctgaccccgaatgccgttcgccaaatatatagtatgatggcgatgtgggacttgtgtcaacaagggtggctttctgtaaatgagttccgcgcgtcctacactctatcggaagtagaaaggaagaggatagcccgggtatatgccgtttggtcagagaaagagaggagctcttatagattcatccggcactctgtactttataggctagggctagggtggctccccgtgaaagtgccgaaaaggaaactccggaaaggcaaggaggaggacagaatggatgatgcccaactgatggacatgctgatgggccaaggagaagacgccctgcacatcgacgtcgacctagggtcgaaaggtacgagtcggtccattgaagaaacccttctggagatcaccgatgagggatacggtgagcctgaccccgacgctcccgtgacccaagtctcgcagccctccctggccgatgttctcacgatagatgacaccgggatgggaaaagtaccggccccagtgcctatttcctctcgttctactgggagcgacgaggactggtgcgaagaggcagaagaaagatcacccgggaccagagtcgtcgccttctcttggcctgttgtctcccgccattccggtaatccccaagaagcccatcaagcagctgctgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

417

Amino Acids

46.27

Weight (kDa)

4.83

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 927
Acc36I ACCTGC 1 cut(s) 411
Acc65I GGTACC 1 cut(s) 80
AccB1I GGYRCC 2 cut(s) 80, 543
AccB7I CCANNNNNTGG 1 cut(s) 880
AccI GTMKAC 1 cut(s) 927
AccII CGCG 5 cut(s) 281, 431, 470, 678, 680
AccIII TCCGGA 1 cut(s) 837
AciI CCGC 8 cut(s) 279, 281, 431, 468, 533, 562, 676, 1207
AclWI GGATC 3 cut(s) 133, 270, 283
AcoI YGGCCR 3 cut(s) 303, 465, 1047
AcyI GRCGYC 2 cut(s) 909, 924
AfaI GTAC 7 cut(s) 82, 134, 176, 335, 783, 946, 1089
AfiI CCNNNNNNNGG 8 cut(s) 90, 114, 222, 486, 487, 580, 880, 1191
AgeI ACCGGT 1 cut(s) 171
AgsI TTSAA 1 cut(s) 962
AhdI GACNNNNNGTC 1 cut(s) 934
AjnI CCWGG 3 cut(s) 107, 368, 1044
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 5 cut(s) 439, 511, 589, 756, 1244
AluI AGCT 5 cut(s) 439, 511, 589, 756, 1244
Alw21I GWGCWC 1 cut(s) 758
Alw26I GTCTC 2 cut(s) 1036, 1207
AlwI GGATC 3 cut(s) 133, 270, 283
AlwNI CAGNNNCTG 2 cut(s) 556, 1247
Ama87I CYCGRG 3 cut(s) 481, 720, 1166
Aor13HI TCCGGA 1 cut(s) 837
AoxI GGCC 9 cut(s) 181, 285, 303, 443, 465, 895, 1047, 1092, 1193
ApeKI GCWGC 7 cut(s) 496, 535, 559, 586, 1036, 1241, 1244
AsiGI ACCGGT 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 969
Asp718I GGTACC 1 cut(s) 80
AspA2I CCTAGG 1 cut(s) 931
AspLEI GCGC 2 cut(s) 496, 680
AspS9I GGNCC 8 cut(s) 73, 213, 286, 351, 895, 954, 1093, 1170
AsuHPI GGTGA 5 cut(s) 272, 570, 973, 1010, 1155
AvaI CYCGRG 3 cut(s) 481, 720, 1166
AvaII GGWCC 5 cut(s) 73, 213, 351, 954, 1170
AvrII CCTAGG 1 cut(s) 931
AxyI CCTNAGG 1 cut(s) 312
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BalI TGGCCA 1 cut(s) 305
BamHI GGATCC 1 cut(s) 275
BanI GGYRCC 2 cut(s) 80, 543
BanII GRGCYC 1 cut(s) 758
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BauI CACGAG 1 cut(s) 500
BbsI GAAGAC 2 cut(s) 132, 912
Bbv12I GWGCWC 1 cut(s) 758
BbvI GCAGC 6 cut(s) 483, 522, 546, 598, 1048, 1231
BccI CCATC 7 cut(s) 88, 449, 619, 874, 886, 1072, 1242
BceAI ACGGC 2 cut(s) 587, 716
BciT130I CCWGG 3 cut(s) 109, 370, 1046
BciVI GTATCC 3 cut(s) 112, 558, 986
BcoDI GTCTC 2 cut(s) 1036, 1207
BfaI CTAG 4 cut(s) 222, 794, 800, 932
BfmI CTRYAG 1 cut(s) 548
BfoI RGCGCY 1 cut(s) 497
BfuAI ACCTGC 1 cut(s) 411
BfuI GTATCC 3 cut(s) 112, 558, 986
BisI GCNGC 8 cut(s) 468, 497, 536, 560, 587, 1037, 1242, 1245
BlnI CCTAGG 1 cut(s) 931
BlsI GCNGC 8 cut(s) 469, 498, 537, 561, 588, 1038, 1243, 1246
Bme18I GGWCC 5 cut(s) 73, 213, 351, 954, 1170
BmeRI GACNNNNNGTC 1 cut(s) 934
BmeT110I CYCGRG 3 cut(s) 481, 720, 1166
BmgT120I GGNCC 8 cut(s) 73, 213, 286, 351, 895, 954, 1093, 1170
BmrI ACTGGG 2 cut(s) 1091, 1131
BmsI GCATC 1 cut(s) 859
BmuI ACTGGG 2 cut(s) 1091, 1131
BoxI GACNNNNGTC 3 cut(s) 642, 1028, 1175
BpiI GAAGAC 2 cut(s) 132, 912
BplI GAGNNNNNCTC 2 cut(s) 740, 772
BpmI CTGGAG 2 cut(s) 391, 995
Bpu10I CCTNAGC 1 cut(s) 440
BsaHI GRCGYC 2 cut(s) 909, 924
BsaWI WCCGGW 4 cut(s) 171, 424, 837, 1214
Bsc4I CCNNNNNNNGG 8 cut(s) 90, 114, 222, 486, 487, 580, 880, 1191
Bse118I RCCGGY 2 cut(s) 171, 1090
Bse1I ACTGG 5 cut(s) 136, 468, 1097, 1126, 1142
Bse21I CCTNAGG 1 cut(s) 312
BseAI TCCGGA 1 cut(s) 837
BseBI CCWGG 3 cut(s) 109, 370, 1046
BseGI GGATG 5 cut(s) 99, 460, 768, 871, 1083
BseLI CCNNNNNNNGG 8 cut(s) 90, 114, 222, 486, 487, 580, 880, 1191
BseMII CTCAG 2 cut(s) 303, 1239
BseNI ACTGG 5 cut(s) 136, 468, 1097, 1126, 1142
BseRI GAGGAG 3 cut(s) 260, 766, 866
BseXI GCAGC 6 cut(s) 483, 522, 546, 598, 1048, 1231
BsgI GTGCAG 2 cut(s) 482, 899
Bsh1236I CGCG 5 cut(s) 281, 431, 470, 678, 680
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 9 cut(s) 183, 287, 305, 445, 467, 897, 1049, 1094, 1195
BshNI GGYRCC 2 cut(s) 80, 543
BshTI ACCGGT 1 cut(s) 171
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 758
BsiHKCI CYCGRG 3 cut(s) 481, 720, 1166
BslFI GGGAC 4 cut(s) 59, 364, 650, 1183
BslI CCNNNNNNNGG 8 cut(s) 90, 114, 222, 486, 487, 580, 880, 1191
BsmAI GTCTC 2 cut(s) 1036, 1207
BsmFI GGGAC 4 cut(s) 59, 364, 650, 1183
BsmI GAATGC 2 cut(s) 318, 604
BsnI GGCC 9 cut(s) 183, 287, 305, 445, 467, 897, 1049, 1094, 1195
BsoBI CYCGRG 3 cut(s) 481, 720, 1166
Bsp1286I GDGCHC 1 cut(s) 758
Bsp13I TCCGGA 1 cut(s) 837
Bsp143I GATC 6 cut(s) 125, 190, 275, 393, 978, 1160
BspACI CCGC 8 cut(s) 279, 281, 431, 468, 533, 562, 676, 1207
BspANI GGCC 9 cut(s) 183, 287, 305, 445, 467, 897, 1049, 1094, 1195
BspCNI CTCAG 2 cut(s) 304, 1240
BspEI TCCGGA 1 cut(s) 837
BspFNI CGCG 5 cut(s) 281, 431, 470, 678, 680
BspMI ACCTGC 1 cut(s) 411
BspPI GGATC 3 cut(s) 133, 270, 283
BspT107I GGYRCC 2 cut(s) 80, 543
BsrFI RCCGGY 2 cut(s) 171, 1090
BsrI ACTGG 5 cut(s) 136, 468, 1097, 1126, 1142
BssAI RCCGGY 2 cut(s) 171, 1090
BssMI GATC 6 cut(s) 125, 190, 275, 393, 978, 1160
BssNI GRCGYC 2 cut(s) 909, 924
BssSI CACGAG 1 cut(s) 500
BssT1I CCWWGG 3 cut(s) 517, 898, 931
Bst2BI CACGAG 1 cut(s) 500
Bst2UI CCWGG 3 cut(s) 109, 370, 1046
Bst4CI ACNGT 5 cut(s) 85, 301, 355, 552, 998
Bst6I CTCTTC 2 cut(s) 704, 1140
BstACI GRCGYC 2 cut(s) 909, 924
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 5 cut(s) 178, 312, 440, 449, 1248
BstDSI CCRYGG 1 cut(s) 279
BstENI CCTNNNNNAGG 1 cut(s) 220
BstF5I GGATG 5 cut(s) 99, 460, 768, 871, 1083
BstFNI CGCG 5 cut(s) 281, 431, 470, 678, 680
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 2 cut(s) 496, 680
BstKTI GATC 6 cut(s) 128, 193, 278, 396, 981, 1163
BstMAI GTCTC 2 cut(s) 1036, 1207
BstMBI GATC 6 cut(s) 125, 190, 275, 393, 978, 1160
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 5 cut(s) 152, 476, 535, 805, 1238
BstNI CCWGG 3 cut(s) 109, 370, 1046
BstNSI RCATGY 1 cut(s) 889
BstPAI GACNNNNGTC 3 cut(s) 642, 1028, 1175
BstSFI CTRYAG 1 cut(s) 548
BstUI CGCG 5 cut(s) 281, 431, 470, 678, 680
BstV1I GCAGC 6 cut(s) 483, 522, 546, 598, 1048, 1231
BstV2I GAAGAC 2 cut(s) 132, 912
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
Bsu36I CCTNAGG 1 cut(s) 312
BsuI GTATCC 3 cut(s) 112, 558, 986
BsuRI GGCC 9 cut(s) 183, 287, 305, 445, 467, 897, 1049, 1094, 1195
BtgI CCRYGG 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 644
BtsCI GGATG 5 cut(s) 99, 460, 768, 871, 1083
BtsIMutI CAGTG 2 cut(s) 306, 1104
BveI ACCTGC 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 153
CaiI CAGNNNCTG 2 cut(s) 556, 1247
CfoI GCGC 2 cut(s) 496, 680
Cfr10I RCCGGY 2 cut(s) 171, 1090
Cfr13I GGNCC 8 cut(s) 73, 213, 286, 351, 895, 954, 1093, 1170
Cfr42I CCGCGG 1 cut(s) 282
Cfr9I CCCGGG 3 cut(s) 481, 720, 1166
CseI GACGC 4 cut(s) 437, 669, 917, 1022
Csp6I GTAC 7 cut(s) 81, 133, 175, 334, 782, 945, 1088
CspAI ACCGGT 1 cut(s) 171
CspCI CAANNNNNGTGG 2 cut(s) 635, 670
CviAII CATG 1 cut(s) 886
CviQI GTAC 7 cut(s) 81, 133, 175, 334, 782, 945, 1088
DdeI CTNAG 5 cut(s) 178, 312, 440, 449, 1248
DpnI GATC 6 cut(s) 127, 192, 277, 395, 980, 1162
DpnII GATC 6 cut(s) 125, 190, 275, 393, 978, 1160
DriI GACNNNNNGTC 1 cut(s) 934
EaeI YGGCCR 3 cut(s) 303, 465, 1047
Eam1104I CTCTTC 2 cut(s) 704, 1140
Eam1105I GACNNNNNGTC 1 cut(s) 934
EarI CTCTTC 2 cut(s) 704, 1140
Ecl136II GAGCTC 1 cut(s) 756
Eco130I CCWWGG 3 cut(s) 517, 898, 931
Eco147I AGGCCT 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 758
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 5 cut(s) 73, 213, 351, 954, 1170
Eco53kI GAGCTC 1 cut(s) 756
Eco81I CCTNAGG 1 cut(s) 312
Eco88I CYCGRG 3 cut(s) 481, 720, 1166
EcoICRI GAGCTC 1 cut(s) 756
EcoNI CCTNNNNNAGG 1 cut(s) 220
EcoO109I RGGNCCY 3 cut(s) 73, 213, 286
EcoRII CCWGG 3 cut(s) 107, 368, 1044
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 3 cut(s) 517, 898, 931
EcoT38I GRGCYC 1 cut(s) 758
ErhI CCWWGG 3 cut(s) 517, 898, 931
FaeI CATG 1 cut(s) 889
FalI AAGNNNNNCTT 4 cut(s) 642, 674, 954, 986
FaqI GGGAC 4 cut(s) 59, 364, 650, 1183
FatI CATG 1 cut(s) 885
FauI CCCGC 1 cut(s) 1214
FblI GTMKAC 1 cut(s) 927
Fnu4HI GCNGC 8 cut(s) 468, 497, 536, 560, 587, 1037, 1242, 1245
FokI GGATG 5 cut(s) 106, 467, 755, 878, 1090
FriOI GRGCYC 1 cut(s) 758
Fsp4HI GCNGC 8 cut(s) 468, 497, 536, 560, 587, 1037, 1242, 1245
FspBI CTAG 4 cut(s) 222, 794, 800, 932
GlaI GCGC 2 cut(s) 495, 679
GluI GCNGC 8 cut(s) 468, 497, 536, 560, 587, 1037, 1242, 1245
GsuI CTGGAG 2 cut(s) 391, 995
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 9 cut(s) 183, 287, 305, 445, 467, 897, 1049, 1094, 1195
HgaI GACGC 4 cut(s) 437, 669, 917, 1022
HhaI GCGC 2 cut(s) 496, 680
Hin1I GRCGYC 2 cut(s) 909, 924
Hin1II CATG 1 cut(s) 889
Hin6I GCGC 2 cut(s) 494, 678
HinP1I GCGC 2 cut(s) 494, 678
HincII GTYRAC 2 cut(s) 647, 928
HindII GTYRAC 2 cut(s) 647, 928
HinfI GANTC 7 cut(s) 98, 248, 472, 505, 765, 949, 1176
HphI GGTGA 5 cut(s) 272, 570, 973, 1010, 1155
Hpy166II GTNNAC 3 cut(s) 336, 647, 928
Hpy188I TCNGA 6 cut(s) 103, 235, 253, 324, 697, 742
Hpy188III TCNNGA 5 cut(s) 53, 311, 838, 974, 1060
Hpy8I GTNNAC 3 cut(s) 336, 647, 928
Hpy99I CGWCG 7 cut(s) 133, 365, 926, 929, 1016, 1133, 1184
HpyAV CCTTC 3 cut(s) 382, 980, 1195
HpyCH4III ACNGT 5 cut(s) 85, 301, 355, 552, 998
HpyCH4IV ACGT 1 cut(s) 924
HpyCH4V TGCA 2 cut(s) 499, 916
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 476, 535, 805, 1238
HpyF3I CTNAG 5 cut(s) 178, 312, 440, 449, 1248
HpySE526I ACGT 1 cut(s) 924
Hsp92I GRCGYC 2 cut(s) 909, 924
Hsp92II CATG 1 cut(s) 889
HspAI GCGC 2 cut(s) 494, 678
Kpn2I TCCGGA 1 cut(s) 837
KpnI GGTACC 1 cut(s) 84
KspI CCGCGG 1 cut(s) 282
Kzo9I GATC 6 cut(s) 125, 190, 275, 393, 978, 1160
LmnI GCTCC 6 cut(s) 436, 516, 753, 813, 1021, 1125
Lsp1109I GCAGC 6 cut(s) 483, 522, 546, 598, 1048, 1231
LweI GCATC 1 cut(s) 859
MaeI CTAG 4 cut(s) 222, 794, 800, 932
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 3 cut(s) 295, 576, 1021
MalI GATC 6 cut(s) 127, 192, 277, 395, 980, 1162
MboI GATC 6 cut(s) 125, 190, 275, 393, 978, 1160
MboII GAAGA 6 cut(s) 132, 721, 917, 974, 1157, 1166
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 758
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 3 cut(s) 257, 958, 1185
Mox20I TGGCCA 1 cut(s) 305
MroI TCCGGA 1 cut(s) 837
MroXI GAANNNNTTC 1 cut(s) 969
MscI TGGCCA 1 cut(s) 305
MslI CAYNNNNRTG 2 cut(s) 890, 1076
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 4 cut(s) 281, 535, 589, 1244
Mva1269I GAATGC 2 cut(s) 318, 604
MvaI CCWGG 3 cut(s) 109, 370, 1046
MvnI CGCG 5 cut(s) 281, 431, 470, 678, 680
MwoI GCNNNNNNNGC 5 cut(s) 152, 476, 535, 805, 1238
NdeII GATC 6 cut(s) 125, 190, 275, 393, 978, 1160
NlaIII CATG 1 cut(s) 889
NmeAIII GCCGAG 2 cut(s) 181, 354
NmuCI GTSAC 3 cut(s) 295, 576, 1021
NspI RCATGY 1 cut(s) 889
PceI AGGCCT 1 cut(s) 445
PcsI WCGNNNNNNNCGW 3 cut(s) 128, 215, 944
PctI GAATGC 2 cut(s) 318, 604
PdmI GAANNNNTTC 1 cut(s) 969
PfeI GAWTC 4 cut(s) 98, 472, 505, 765
PflMI CCANNNNNTGG 1 cut(s) 880
PinAI ACCGGT 1 cut(s) 171
PkrI GCNGC 8 cut(s) 469, 498, 537, 561, 588, 1038, 1243, 1246
PleI GAGTC 3 cut(s) 256, 957, 1184
PpsI GAGTC 3 cut(s) 256, 957, 1184
PpuMI RGGWCCY 2 cut(s) 73, 213
PshAI GACNNNNGTC 3 cut(s) 642, 1028, 1175
Psp124BI GAGCTC 1 cut(s) 758
Psp5II RGGWCCY 2 cut(s) 73, 213
Psp6I CCWGG 3 cut(s) 107, 368, 1044
PspGI CCWGG 3 cut(s) 107, 368, 1044
PspPI GGNCC 8 cut(s) 73, 213, 286, 351, 895, 954, 1093, 1170
PspPPI RGGWCCY 2 cut(s) 73, 213
PstNI CAGNNNCTG 2 cut(s) 556, 1247
PsuI RGATCY 1 cut(s) 275
PvuII CAGCTG 2 cut(s) 589, 1244
RsaI GTAC 7 cut(s) 82, 134, 176, 335, 783, 946, 1089
RsaNI GTAC 7 cut(s) 81, 133, 175, 334, 782, 945, 1088
RseI CAYNNNNRTG 2 cut(s) 890, 1076
SacI GAGCTC 1 cut(s) 758
SacII CCGCGG 1 cut(s) 282
SalI GTCGAC 1 cut(s) 926
SatI GCNGC 8 cut(s) 468, 497, 536, 560, 587, 1037, 1242, 1245
Sau3AI GATC 6 cut(s) 125, 190, 275, 393, 978, 1160
Sau96I GGNCC 8 cut(s) 73, 213, 286, 351, 895, 954, 1093, 1170
SchI GAGTC 3 cut(s) 257, 958, 1185
SduI GDGCHC 1 cut(s) 758
SfaNI GCATC 1 cut(s) 859
SfcI CTRYAG 1 cut(s) 548
Sfr303I CCGCGG 1 cut(s) 282
SgrBI CCGCGG 1 cut(s) 282
SinI GGWCC 5 cut(s) 73, 213, 351, 954, 1170
SmaI CCCGGG 3 cut(s) 483, 722, 1168
SmiMI CAYNNNNRTG 2 cut(s) 890, 1076
Sse9I AATT 1 cut(s) 194
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 8 cut(s) 279, 281, 431, 468, 533, 562, 676, 1207
SspMI CTAG 4 cut(s) 222, 794, 800, 932
SstI GAGCTC 1 cut(s) 758
StuI AGGCCT 1 cut(s) 445
StyI CCWWGG 3 cut(s) 517, 898, 931
TaaI ACNGT 5 cut(s) 85, 301, 355, 552, 998
TaiI ACGT 1 cut(s) 927
TaqI TCGA 5 cut(s) 168, 218, 921, 927, 938
TaqII GACCGA 1 cut(s) 942
TasI AATT 1 cut(s) 194
TatI WGTACW 1 cut(s) 781
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 4 cut(s) 98, 472, 505, 765
TscAI CASTG 2 cut(s) 306, 1104
TseFI GTSAC 3 cut(s) 295, 576, 1021
TseI GCWGC 7 cut(s) 496, 535, 559, 586, 1036, 1241, 1244
Tsp45I GTSAC 3 cut(s) 295, 576, 1021
TspDTI ATGAA 2 cut(s) 401, 757
TspMI CCCGGG 3 cut(s) 481, 720, 1166
TspRI CASTG 2 cut(s) 306, 1104
Van91I CCANNNNNTGG 1 cut(s) 880
VpaK11BI GGWCC 5 cut(s) 73, 213, 351, 954, 1170
XagI CCTNNNNNAGG 1 cut(s) 220
XceI RCATGY 1 cut(s) 889
XmaI CCCGGG 3 cut(s) 481, 720, 1166
XmaJI CCTAGG 1 cut(s) 931
XmiI GTMKAC 1 cut(s) 927
XmnI GAANNNNTTC 1 cut(s) 969
XspI CTAG 4 cut(s) 222, 794, 800, 932
ZraI GACGTC 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.