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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 169 |
| AccBSI | CCGCTC | 1 cut(s) | 223 |
| AccII | CGCG | 1 cut(s) | 360 |
| AciI | CCGC | 2 cut(s) | 34, 223 |
| AcoI | YGGCCR | 1 cut(s) | 255 |
| AcuI | CTGAAG | 3 cut(s) | 35, 170, 458 |
| AfaI | GTAC | 4 cut(s) | 116, 188, 443, 467 |
| AfeI | AGCGCT | 1 cut(s) | 415 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 40, 196 |
| AflIII | ACRYGT | 1 cut(s) | 111 |
| AgsI | TTSAA | 3 cut(s) | 109, 235, 487 |
| AjnI | CCWGG | 1 cut(s) | 45 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 194, 226, 311, 343 |
| AluBI | AGCT | 4 cut(s) | 76, 271, 309, 394 |
| AluI | AGCT | 4 cut(s) | 76, 271, 309, 394 |
| Alw21I | GWGCWC | 1 cut(s) | 499 |
| Alw26I | GTCTC | 1 cut(s) | 173 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 103 |
| Aor51HI | AGCGCT | 1 cut(s) | 415 |
| AoxI | GGCC | 2 cut(s) | 42, 255 |
| ApaI | GGGCCC | 1 cut(s) | 46 |
| ApeKI | GCWGC | 1 cut(s) | 458 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 279 |
| AspLEI | GCGC | 1 cut(s) | 416 |
| AspS9I | GGNCC | 3 cut(s) | 10, 42, 43 |
| AsuC2I | CCSGG | 2 cut(s) | 8, 463 |
| AsuHPI | GGTGA | 2 cut(s) | 172, 458 |
| AvaII | GGWCC | 1 cut(s) | 10 |
| BaeGI | GKGCMC | 1 cut(s) | 46 |
| BalI | TGGCCA | 1 cut(s) | 257 |
| BanII | GRGCYC | 1 cut(s) | 46 |
| BauI | CACGAG | 1 cut(s) | 194 |
| Bbv12I | GWGCWC | 1 cut(s) | 499 |
| BbvCI | CCTCAGC | 1 cut(s) | 291 |
| BbvI | GCAGC | 1 cut(s) | 470 |
| BciT130I | CCWGG | 1 cut(s) | 47 |
| BciVI | GTATCC | 1 cut(s) | 133 |
| BcnI | CCSGG | 2 cut(s) | 8, 463 |
| BcoDI | GTCTC | 1 cut(s) | 173 |
| BfaI | CTAG | 1 cut(s) | 29 |
| BfoI | RGCGCY | 1 cut(s) | 417 |
| BfuAI | ACCTGC | 1 cut(s) | 169 |
| BfuI | GTATCC | 1 cut(s) | 133 |
| BisI | GCNGC | 1 cut(s) | 459 |
| BlsI | GCNGC | 1 cut(s) | 460 |
| Bme1390I | CCNGG | 3 cut(s) | 8, 47, 463 |
| Bme18I | GGWCC | 1 cut(s) | 10 |
| BmgT120I | GGNCC | 3 cut(s) | 10, 42, 43 |
| BmiI | GGNNCC | 4 cut(s) | 11, 44, 276, 345 |
| BmrFI | CCNGG | 3 cut(s) | 8, 47, 463 |
| BmsI | GCATC | 5 cut(s) | 45, 84, 115, 277, 393 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 212, 244 |
| BpmI | CTGGAG | 1 cut(s) | 331 |
| Bpu10I | CCTNAGC | 1 cut(s) | 291 |
| BpuEI | CTTGAG | 2 cut(s) | 402, 521 |
| BpuMI | CCSGG | 2 cut(s) | 8, 463 |
| BsaJI | CCNNGG | 3 cut(s) | 45, 252, 318 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 392, 422 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 40, 196 |
| BseBI | CCWGG | 1 cut(s) | 47 |
| BseDI | CCNNGG | 3 cut(s) | 45, 252, 318 |
| BseGI | GGATG | 3 cut(s) | 292, 432, 478 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 40, 196 |
| BseMII | CTCAG | 1 cut(s) | 282 |
| BseRI | GAGGAG | 5 cut(s) | 149, 170, 212, 308, 386 |
| BseSI | GKGCMC | 1 cut(s) | 46 |
| BseXI | GCAGC | 1 cut(s) | 470 |
| Bsh1236I | CGCG | 1 cut(s) | 360 |
| BshFI | GGCC | 2 cut(s) | 44, 257 |
| BsiHKAI | GWGCWC | 1 cut(s) | 499 |
| BsiSI | CCGG | 2 cut(s) | 7, 462 |
| BslFI | GGGAC | 2 cut(s) | 23, 239 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 40, 196 |
| BsmAI | GTCTC | 1 cut(s) | 173 |
| BsmFI | GGGAC | 2 cut(s) | 23, 239 |
| BsnI | GGCC | 2 cut(s) | 44, 257 |
| Bsp120I | GGGCCC | 1 cut(s) | 42 |
| Bsp1286I | GDGCHC | 2 cut(s) | 46, 499 |
| BspACI | CCGC | 2 cut(s) | 34, 223 |
| BspANI | GGCC | 2 cut(s) | 44, 257 |
| BspCNI | CTCAG | 1 cut(s) | 283 |
| BspFNI | CGCG | 1 cut(s) | 360 |
| BspLI | GGNNCC | 4 cut(s) | 11, 44, 276, 345 |
| BspMI | ACCTGC | 1 cut(s) | 169 |
| BspQI | GCTCTTC | 1 cut(s) | 345 |
| BsrBI | CCGCTC | 1 cut(s) | 223 |
| BssECI | CCNNGG | 3 cut(s) | 45, 252, 318 |
| BssSI | CACGAG | 1 cut(s) | 194 |
| BssT1I | CCWWGG | 2 cut(s) | 252, 318 |
| Bst2BI | CACGAG | 1 cut(s) | 194 |
| Bst2UI | CCWGG | 1 cut(s) | 47 |
| Bst4CI | ACNGT | 2 cut(s) | 105, 446 |
| Bst6I | CTCTTC | 2 cut(s) | 345, 503 |
| BstC8I | GCNNGC | 3 cut(s) | 78, 99, 130 |
| BstDEI | CTNAG | 2 cut(s) | 261, 291 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 194 |
| BstF5I | GGATG | 3 cut(s) | 292, 432, 478 |
| BstFNI | CGCG | 1 cut(s) | 360 |
| BstH2I | RGCGCY | 1 cut(s) | 417 |
| BstHHI | GCGC | 1 cut(s) | 416 |
| BstMAI | GTCTC | 1 cut(s) | 173 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 125 |
| BstNI | CCWGG | 1 cut(s) | 47 |
| BstSCI | CCNGG | 3 cut(s) | 6, 45, 461 |
| BstSLI | GKGCMC | 1 cut(s) | 46 |
| BstUI | CGCG | 1 cut(s) | 360 |
| BstV1I | GCAGC | 1 cut(s) | 470 |
| BsuI | GTATCC | 1 cut(s) | 133 |
| BsuRI | GGCC | 2 cut(s) | 44, 257 |
| BtsCI | GGATG | 3 cut(s) | 292, 432, 478 |
| BtsIMutI | CAGTG | 1 cut(s) | 101 |
| BveI | ACCTGC | 1 cut(s) | 169 |
| Cac8I | GCNNGC | 3 cut(s) | 78, 99, 130 |
| CaiI | CAGNNNCTG | 1 cut(s) | 103 |
| CfoI | GCGC | 1 cut(s) | 416 |
| Cfr13I | GGNCC | 3 cut(s) | 10, 42, 43 |
| Csp6I | GTAC | 4 cut(s) | 115, 187, 442, 466 |
| CviAII | CATG | 2 cut(s) | 379, 469 |
| CviQI | GTAC | 4 cut(s) | 115, 187, 442, 466 |
| DdeI | CTNAG | 2 cut(s) | 261, 291 |
| EaeI | YGGCCR | 1 cut(s) | 255 |
| Eam1104I | CTCTTC | 2 cut(s) | 345, 503 |
| EarI | CTCTTC | 2 cut(s) | 345, 503 |
| Eco130I | CCWWGG | 2 cut(s) | 252, 318 |
| Eco24I | GRGCYC | 1 cut(s) | 46 |
| Eco47I | GGWCC | 1 cut(s) | 10 |
| Eco47III | AGCGCT | 1 cut(s) | 415 |
| Eco57I | CTGAAG | 3 cut(s) | 35, 170, 458 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 194 |
| EcoO109I | RGGNCCY | 1 cut(s) | 10 |
| EcoRII | CCWGG | 1 cut(s) | 45 |
| EcoT14I | CCWWGG | 2 cut(s) | 252, 318 |
| EcoT38I | GRGCYC | 1 cut(s) | 46 |
| ErhI | CCWWGG | 2 cut(s) | 252, 318 |
| FaeI | CATG | 2 cut(s) | 382, 472 |
| FaiI | YATR | 3 cut(s) | 23, 380, 470 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 483, 515 |
| FaqI | GGGAC | 2 cut(s) | 23, 239 |
| FatI | CATG | 2 cut(s) | 378, 468 |
| FauI | CCCGC | 1 cut(s) | 216 |
| Fnu4HI | GCNGC | 1 cut(s) | 459 |
| FokI | GGATG | 3 cut(s) | 299, 419, 485 |
| FriOI | GRGCYC | 1 cut(s) | 46 |
| Fsp4HI | GCNGC | 1 cut(s) | 459 |
| FspBI | CTAG | 1 cut(s) | 29 |
| GlaI | GCGC | 1 cut(s) | 415 |
| GluI | GCNGC | 1 cut(s) | 459 |
| GsuI | CTGGAG | 1 cut(s) | 331 |
| HaeII | RGCGCY | 1 cut(s) | 417 |
| HaeIII | GGCC | 2 cut(s) | 44, 257 |
| HapII | CCGG | 2 cut(s) | 7, 462 |
| HhaI | GCGC | 1 cut(s) | 416 |
| Hin1II | CATG | 2 cut(s) | 382, 472 |
| Hin6I | GCGC | 1 cut(s) | 414 |
| HinP1I | GCGC | 1 cut(s) | 414 |
| HindIII | AAGCTT | 1 cut(s) | 392 |
| HinfI | GANTC | 2 cut(s) | 86, 227 |
| HpaII | CCGG | 2 cut(s) | 7, 462 |
| HphI | GGTGA | 2 cut(s) | 172, 458 |
| Hpy166II | GTNNAC | 1 cut(s) | 115 |
| Hpy188III | TCNNGA | 6 cut(s) | 284, 347, 419, 436, 487, 500 |
| Hpy8I | GTNNAC | 1 cut(s) | 115 |
| HpyAV | CCTTC | 5 cut(s) | 10, 145, 196, 211, 292 |
| HpyCH4III | ACNGT | 2 cut(s) | 105, 446 |
| HpyCH4IV | ACGT | 1 cut(s) | 111 |
| HpyCH4V | TGCA | 2 cut(s) | 97, 458 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 125 |
| HpyF3I | CTNAG | 2 cut(s) | 261, 291 |
| HpySE526I | ACGT | 1 cut(s) | 111 |
| Hsp92II | CATG | 2 cut(s) | 382, 472 |
| HspAI | GCGC | 1 cut(s) | 414 |
| LguI | GCTCTTC | 1 cut(s) | 345 |
| LmnI | GCTCC | 2 cut(s) | 9, 220 |
| Lsp1109I | GCAGC | 1 cut(s) | 470 |
| LweI | GCATC | 5 cut(s) | 45, 84, 115, 277, 393 |
| MaeI | CTAG | 1 cut(s) | 29 |
| MaeII | ACGT | 1 cut(s) | 111 |
| MbiI | CCGCTC | 1 cut(s) | 223 |
| MboII | GAAGA | 4 cut(s) | 247, 362, 517, 520 |
| MhlI | GDGCHC | 2 cut(s) | 46, 499 |
| MlsI | TGGCCA | 1 cut(s) | 257 |
| MluCI | AATT | 1 cut(s) | 209 |
| MluNI | TGGCCA | 1 cut(s) | 257 |
| MlyI | GAGTC | 2 cut(s) | 95, 221 |
| Mox20I | TGGCCA | 1 cut(s) | 257 |
| MroXI | GAANNNNTTC | 1 cut(s) | 279 |
| MscI | TGGCCA | 1 cut(s) | 257 |
| Msp20I | TGGCCA | 1 cut(s) | 257 |
| MspI | CCGG | 2 cut(s) | 7, 462 |
| MspR9I | CCNGG | 3 cut(s) | 8, 47, 463 |
| MvaI | CCWGG | 1 cut(s) | 47 |
| MvnI | CGCG | 1 cut(s) | 360 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 125 |
| NciI | CCSGG | 2 cut(s) | 8, 463 |
| NlaIII | CATG | 2 cut(s) | 382, 472 |
| NlaIV | GGNNCC | 4 cut(s) | 11, 44, 276, 345 |
| PciSI | GCTCTTC | 1 cut(s) | 345 |
| PdmI | GAANNNNTTC | 1 cut(s) | 279 |
| PfoI | TCCNGGA | 1 cut(s) | 6 |
| PkrI | GCNGC | 1 cut(s) | 460 |
| PleI | GAGTC | 2 cut(s) | 94, 221 |
| PpsI | GAGTC | 2 cut(s) | 94, 221 |
| PpuMI | RGGWCCY | 1 cut(s) | 10 |
| Psp5II | RGGWCCY | 1 cut(s) | 10 |
| Psp6I | CCWGG | 1 cut(s) | 45 |
| PspGI | CCWGG | 1 cut(s) | 45 |
| PspN4I | GGNNCC | 4 cut(s) | 11, 44, 276, 345 |
| PspOMI | GGGCCC | 1 cut(s) | 42 |
| PspPI | GGNCC | 3 cut(s) | 10, 42, 43 |
| PspPPI | RGGWCCY | 1 cut(s) | 10 |
| PstNI | CAGNNNCTG | 1 cut(s) | 103 |
| RsaI | GTAC | 4 cut(s) | 116, 188, 443, 467 |
| RsaNI | GTAC | 4 cut(s) | 115, 187, 442, 466 |
| SapI | GCTCTTC | 1 cut(s) | 345 |
| SatI | GCNGC | 1 cut(s) | 459 |
| Sau96I | GGNCC | 3 cut(s) | 10, 42, 43 |
| SchI | GAGTC | 2 cut(s) | 95, 221 |
| ScrFI | CCNGG | 3 cut(s) | 8, 47, 463 |
| SduI | GDGCHC | 2 cut(s) | 46, 499 |
| SfaNI | GCATC | 5 cut(s) | 45, 84, 115, 277, 393 |
| SinI | GGWCC | 1 cut(s) | 10 |
| SmlI | CTYRAG | 2 cut(s) | 417, 500 |
| SmoI | CTYRAG | 2 cut(s) | 417, 500 |
| Sse9I | AATT | 1 cut(s) | 209 |
| SsiI | CCGC | 2 cut(s) | 34, 223 |
| SspMI | CTAG | 1 cut(s) | 29 |
| StyD4I | CCNGG | 3 cut(s) | 6, 45, 461 |
| StyI | CCWWGG | 2 cut(s) | 252, 318 |
| TaaI | ACNGT | 2 cut(s) | 105, 446 |
| TaiI | ACGT | 1 cut(s) | 114 |
| TaqI | TCGA | 1 cut(s) | 386 |
| TasI | AATT | 1 cut(s) | 209 |
| TscAI | CASTG | 1 cut(s) | 108 |
| TseI | GCWGC | 1 cut(s) | 458 |
| TspDTI | ATGAA | 2 cut(s) | 367, 489 |
| TspRI | CASTG | 1 cut(s) | 108 |
| VpaK11BI | GGWCC | 1 cut(s) | 10 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 194 |
| XmnI | GAANNNNTTC | 1 cut(s) | 279 |
| XspI | CTAG | 1 cut(s) | 29 |