Rmu_sc0008199.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008199.1
OG0000087
Physical Location & Seq
Reverse (-)
55210 .. 58136
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008199.1_g000008.1.cds

Sequence Viewer

Length: 2232 bp
atgtgtagcgatcctacggcagagggcgtttcggtttcgacggtcctgatgcgttggagattgaatttaagagggaaactgactgttttccctcacttttcgcgaaaacaagaagctcgagagacttggaaggtttgcagccaagagacagggagaaccaagggagaattgcaagctgaagtggacatcgaccggtacctaggccgggtagaccaattagcggagaacacggggtcctcgactggggtgttctcggagagtagtggggagtccgacgagggtgagagtgagggtggatctgcgaaggctccggtagtcacagtggccattcccgagggcattcctaagccgaggtacatgcttacggacgggaccatatgcgacgaacctgggagaagcataacgatgaaggagatcgtagacatgcggctgaagtgggggataccggaagcagtagagcttaggccacttagggatggggagatggccgcgaatcctgccccggggtgggtggcgctgcacgagaatcagctccaccaagggttatcgctacccctaccccggtgtctacagtatctgctgcggatgctgaacctgtcaccggggcagctgaccccgaatgccgttcgccaaatatatagtatgatggctatgtgggacctgtgccagcaagggtggccttccataaatgagttccgcgcggtacaccgggtattgtactcaaggaagcagtcttgtgcgggtacggtgacctttgccgctagggattacgagccgctagttaccgatatgcctacctcgatgagcaaaaggtggaggaacaaagtgttcctagctggtgggcggtggaagataaaaaataagaactggcagctgatcggtacctttcaagctatcggggaccagtcctatacgctatccgaagtggaaaagaagaggatagcccgggtatatgccgtgtggtcggagaaagagaggagctcttatagattcatccggcactctatactctttaggctagggttagggtggctccccgtgaaagccccgaagaggaaaccccggaaaggtaaggaggaagacaggatggatgacgctcaactgatggacatgctgatgagccagggagaagatgccctgcacatcgacgtcgaactagggtcgaaaggcacgagtctgtccattgaagagacccttttggagataaccgatgagggatacggtgaacctgatcccgacgctcctgtggcccaccccgtgcagccctccatggccgatgtcattacgatagatgacaccggaatgggaaaagtaccggcctctgtgcctatctcttctcgttctactgggaccgatgaggcgctactccccggtgagaagaagagatcccacaagcaccggcgtcaaactgataaggaggtgacgtacactggccgggatgtccagggtaccggtgcgaagaggcaaaagaaagatcacccgggatcagggccgtcaccttcccttggcctgttatctcccgccgttccggtaatccccaagaaacccatcaagcagctgctgaacgaatacggggtcgccgatgaaaagttcatgcagtccatgcttggggatctgaaggatatcgacctcgaccgggttcgagccaaagataatactccccaggagaatcgctgtctcgcccgagaatcgatgatgcgggcactctttaatgtgtacgccatcgacgccagcgaggaggatactcatctgaaggaggaggttagaaatctctccgggcaggtgaagtaccttcatggcgagaaggccaagctggagaaggagcaggactcgttgagggctgagatggccgcctccaagcagcggattgcggagcttgagggcgaggttactgaggcgcgggaggaggtaaagaatgcccgggactccgagaagaaggctgtagagtctgccgtctcatggaaggagaaagcagactctctggaggatcgcctacccacggagaggcacgaggtcgtggaggagtacaagtcctcagatgagcttatctccatgctggctgctgcccaagataaggctgtcatcatgaagtttaaggagtgggtagctgccgggtatctagatgaggccaaattcaggcggggtctcctggagaaaaggaaaaaagagctggaggcggcgggcaagtctggtgccggcgggtctcagagtaccgatggggatcggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

743

Amino Acids

83.07

Weight (kDa)

6.44

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28970 FvH4_2g03432 FvH4_2g17701 FvH4_4g10000 FvH4_4g15481 FvH4_4g15603 FvH4_6g16061 FvH4_6g25501
rosa_chinensis RchiOBHm_Chr2g0137471 RchiOBHm_Chr5g0054331
rosa_laevigata RLG00000019477 RLG00000022653 RLG00000029242
rosa_multiflora Rmu_co8012786.1_g000001 Rmu_co8165502.1_g000001 Rmu_co8383963.1_g000001 Rmu_co8428657.1_g000002 Rmu_co8441559.1_g000002 Rmu_co8493267.1_g000002 Rmu_co8512765.1_g000001 Rmu_co8522487.1_g000001 Rmu_sc0000045.1_g000034 Rmu_sc0000077.1_g000002 Rmu_sc0000177.1_g000003 Rmu_sc0000194.1_g000003 Rmu_sc0000239.1_g000073 Rmu_sc0000265.1_g000006 Rmu_sc0000271.1_g000031 Rmu_sc0000276.1_g000021 Rmu_sc0000279.1_g000008 Rmu_sc0000280.1_g000017 Rmu_sc0000315.1_g000047 Rmu_sc0000381.1_g000029 Rmu_sc0000423.1_g000013 Rmu_sc0000455.1_g000020 Rmu_sc0000596.1_g000032 Rmu_sc0000605.1_g000020 Rmu_sc0000643.1_g000006 Rmu_sc0000676.1_g000028 Rmu_sc0000698.1_g000063 Rmu_sc0000698.1_g000064 Rmu_sc0000706.1_g000030 Rmu_sc0000744.1_g000078 Rmu_sc0000744.1_g000098 Rmu_sc0000779.1_g000016 Rmu_sc0000808.1_g000006 Rmu_sc0000830.1_g000044 Rmu_sc0000842.1_g000021 Rmu_sc0000883.1_g000019 Rmu_sc0000904.1_g000013 Rmu_sc0000924.1_g000001 Rmu_sc0000959.1_g000012 Rmu_sc0001045.1_g000005 Rmu_sc0001069.1_g000021 Rmu_sc0001107.1_g000001 Rmu_sc0001155.1_g000006 Rmu_sc0001244.1_g000023 Rmu_sc0001302.1_g000017 Rmu_sc0001382.1_g000007 Rmu_sc0001393.1_g000026 Rmu_sc0001436.1_g000015 Rmu_sc0001464.1_g000021 Rmu_sc0001477.1_g000001 Rmu_sc0001483.1_g000024 Rmu_sc0001483.1_g000026 Rmu_sc0001499.1_g000020 Rmu_sc0001518.1_g000001 Rmu_sc0001520.1_g000003 Rmu_sc0001522.1_g000020 Rmu_sc0001529.1_g000008 Rmu_sc0001554.1_g000016 Rmu_sc0001563.1_g000018 Rmu_sc0001565.1_g000024 Rmu_sc0001578.1_g000014 Rmu_sc0001611.1_g000003 Rmu_sc0001700.1_g000026 Rmu_sc0001849.1_g000075 Rmu_sc0001866.1_g000011 Rmu_sc0001898.1_g000013 Rmu_sc0002029.1_g000007 Rmu_sc0002082.1_g000055 Rmu_sc0002206.1_g000032 Rmu_sc0002253.1_g000031 Rmu_sc0002264.1_g000020 Rmu_sc0002414.1_g000024 Rmu_sc0002451.1_g000063 Rmu_sc0002490.1_g000015 Rmu_sc0002539.1_g000010 Rmu_sc0002545.1_g000060 Rmu_sc0002564.1_g000020 Rmu_sc0002584.1_g000062 Rmu_sc0002669.1_g000034 Rmu_sc0002669.1_g000035 Rmu_sc0002690.1_g000010 Rmu_sc0002764.1_g000070 Rmu_sc0002786.1_g000006 Rmu_sc0002804.1_g000013 Rmu_sc0002868.1_g000015 Rmu_sc0002868.1_g000055 Rmu_sc0002889.1_g000039 Rmu_sc0002892.1_g000070 Rmu_sc0002926.1_g000001 Rmu_sc0002986.1_g000063 Rmu_sc0003032.1_g000023 Rmu_sc0003033.1_g000059 Rmu_sc0003063.1_g000022 Rmu_sc0003079.1_g000001 Rmu_sc0003092.1_g000012 Rmu_sc0003244.1_g000013 Rmu_sc0003276.1_g000004 Rmu_sc0003328.1_g000003 Rmu_sc0003352.1_g000034 Rmu_sc0003352.1_g000035 Rmu_sc0003419.1_g000038 Rmu_sc0003551.1_g000015 Rmu_sc0003669.1_g000036 Rmu_sc0003760.1_g000029 Rmu_sc0003781.1_g000021 Rmu_sc0003865.1_g000002 Rmu_sc0004012.1_g000010 Rmu_sc0004140.1_g000028 Rmu_sc0004152.1_g000002 Rmu_sc0004303.1_g000009 Rmu_sc0004336.1_g000039 Rmu_sc0004365.1_g000012 Rmu_sc0004365.1_g000013 Rmu_sc0004379.1_g000010 Rmu_sc0004529.1_g000017 Rmu_sc0004529.1_g000018 Rmu_sc0004536.1_g000025 Rmu_sc0004574.1_g000019 Rmu_sc0004602.1_g000042 Rmu_sc0004836.1_g000018 Rmu_sc0004841.1_g000037 Rmu_sc0004903.1_g000006 Rmu_sc0004977.1_g000006 Rmu_sc0005137.1_g000025 Rmu_sc0005292.1_g000031 Rmu_sc0005292.1_g000032 Rmu_sc0005353.1_g000014 Rmu_sc0005406.1_g000005 Rmu_sc0005469.1_g000016 Rmu_sc0005506.1_g000003 Rmu_sc0005507.1_g000003 Rmu_sc0005629.1_g000006 Rmu_sc0005664.1_g000033 Rmu_sc0005665.1_g000042 Rmu_sc0005685.1_g000003 Rmu_sc0006375.1_g000004 Rmu_sc0006444.1_g000020 Rmu_sc0006453.1_g000012 Rmu_sc0006676.1_g000013 Rmu_sc0006934.1_g000001 Rmu_sc0006945.1_g000001 Rmu_sc0006945.1_g000006 Rmu_sc0006954.1_g000015 Rmu_sc0007102.1_g000012 Rmu_sc0007144.1_g000007 Rmu_sc0007144.1_g000008 Rmu_sc0007230.1_g000003 Rmu_sc0007415.1_g000040 Rmu_sc0007729.1_g000001 Rmu_sc0007920.1_g000017 Rmu_sc0008058.1_g000023 Rmu_sc0008199.1_g000008 Rmu_sc0008232.1_g000010 Rmu_sc0008232.1_g000011 Rmu_sc0008336.1_g000011 Rmu_sc0008581.1_g000007 Rmu_sc0008623.1_g000002 Rmu_sc0009255.1_g000007 Rmu_sc0009479.1_g000008 Rmu_sc0009483.1_g000001 Rmu_sc0009641.1_g000001 Rmu_sc0009660.1_g000003 Rmu_sc0009978.1_g000010 Rmu_sc0010048.1_g000009 Rmu_sc0010547.1_g000007 Rmu_sc0010988.1_g000006 Rmu_sc0011148.1_g000003 Rmu_sc0011203.1_g000010 Rmu_sc0011375.1_g000004 Rmu_sc0011375.1_g000005 Rmu_sc0011559.1_g000005 Rmu_sc0012199.1_g000001 Rmu_sc0013224.1_g000005 Rmu_sc0013931.1_g000004 Rmu_sc0013931.1_g000005 Rmu_sc0013985.1_g000006 Rmu_sc0014406.1_g000001 Rmu_sc0014463.1_g000002 Rmu_sc0016218.1_g000005 Rmu_sc0019345.1_g000002 Rmu_sc0019655.1_g000001 Rmu_sc0020833.1_g000001 Rmu_sc0024204.1_g000001 Rmu_sc0024309.1_g000001 Rmu_sc0027177.1_g000002 Rmu_sc0027778.1_g000002 Rmu_sc0028215.1_g000001 Rmu_sc0029924.1_g000001 Rmu_sc0032552.1_g000001 Rmu_sc0036156.1_g000001 Rmu_sc0037073.1_g000001 Rmu_sc0040495.1_g000001 Rmu_ssc0000255.1_g000056 Rmu_ssc0000309.1_g000006 Rmu_ssc0000312.1_g000005 Rmu_ssc0000371.1_g000021 Rmu_ssc0000372.1_g000010 Rmu_ssc0000372.1_g000011 Rmu_ssc0000372.1_g000069 Rmu_ssc0000386.1_g000005 Rmu_ssc0000386.1_g000006 Rmu_ssc0000443.1_g000032
rosa_roxburghii Rroxscaffold_154G00447940 Rroxscaffold_1G00009660 Rroxscaffold_1G00016990 Rroxscaffold_1G00021370 Rroxscaffold_1G00037860 Rroxscaffold_2G00101680 Rroxscaffold_2G00101690 Rroxscaffold_2G00122690 Rroxscaffold_2G00122700 Rroxscaffold_2G00123340 Rroxscaffold_2G00123350 Rroxscaffold_2G00125480 Rroxscaffold_2G00136130 Rroxscaffold_2G00146590 Rroxscaffold_3G00218350 Rroxscaffold_3G00218360 Rroxscaffold_3G00218370 Rroxscaffold_3G00218380 Rroxscaffold_3G00232530 Rroxscaffold_3G00262600 Rroxscaffold_3G00263070 Rroxscaffold_4G00289030 Rroxscaffold_4G00296530 Rroxscaffold_4G00306140 Rroxscaffold_4G00306150 Rroxscaffold_4G00306380 Rroxscaffold_4G00306390 Rroxscaffold_4G00306400 Rroxscaffold_4G00309560 Rroxscaffold_4G00316600 Rroxscaffold_4G00322820 Rroxscaffold_4G00322830 Rroxscaffold_4G00324370 Rroxscaffold_4G00332350 Rroxscaffold_5G00346450 Rroxscaffold_5G00352960 Rroxscaffold_5G00352970 Rroxscaffold_5G00360310 Rroxscaffold_5G00373670 Rroxscaffold_5G00378610 Rroxscaffold_5G00378940 Rroxscaffold_6G00388240 Rroxscaffold_6G00389010 Rroxscaffold_6G00389030 Rroxscaffold_6G00399900 Rroxscaffold_6G00399910 Rroxscaffold_6G00400260 Rroxscaffold_6G00400270 Rroxscaffold_6G00400280 Rroxscaffold_7G00164100 Rroxscaffold_7G00176300 Rroxscaffold_7G00176310 Rroxscaffold_7G00177210 Rroxscaffold_7G00204300 Rroxscaffold_7G00204310 Rroxscaffold_7G00204320
rosa_rugosa Rorug06G0076500
rosa_samantha Rh1AG108400 Rh2AG377100 Rh2AG377200 Rh2BG383500 Rh2CG362800 Rh2DG399900 Rh2DG439600 Rh2DG672800 Rh6DG186300 Rh7AG351400 Rh7BG368500 Rh7CG368800 Rh7CG411100 Rh7DG424400
rosa_wichuraiana Rw1G021100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1771
AatII GACGTC 1 cut(s) 1152
Acc36I ACCTGC 1 cut(s) 1771
Acc65I GGTACC 3 cut(s) 195, 881, 1448
AccB1I GGYRCC 4 cut(s) 195, 881, 1448, 2192
AccI GTMKAC 3 cut(s) 210, 420, 568
AccII CGCG 5 cut(s) 103, 491, 699, 701, 1900
AclWI GGATC 8 cut(s) 5, 304, 1226, 1380, 1492, 1620, 1995, 2229
AcoI YGGCCR 5 cut(s) 324, 486, 1272, 1432, 1848
AcsI RAATTY 2 cut(s) 64, 2132
AcuI CTGAAG 4 cut(s) 198, 452, 1637, 1772
AcyI GRCGYC 3 cut(s) 1149, 1402, 1728
AdeI CACNNNGTG 1 cut(s) 1258
AgeI ACCGGT 2 cut(s) 192, 1451
AgsI TTSAA 3 cut(s) 64, 890, 1187
AjnI CCWGG 5 cut(s) 388, 1122, 1443, 1662, 2148
AloI GAACNNNNNNTCC 2 cut(s) 218, 250
Alw21I GWGCWC 1 cut(s) 983
Alw26I GTCTC 7 cut(s) 116, 140, 1184, 1682, 1960, 2150, 2208
AlwI GGATC 8 cut(s) 5, 304, 1226, 1380, 1492, 1620, 1995, 2229
AlwNI CAGNNNCTG 2 cut(s) 577, 1561
Ama87I CYCGRG 7 cut(s) 117, 332, 502, 945, 1480, 1683, 1920
ApoI RAATTY 2 cut(s) 64, 2132
ArsI GACNNNNNNTTYG 2 cut(s) 1560, 1592
AsiGI ACCGGT 2 cut(s) 192, 1451
Asp718I GGTACC 3 cut(s) 195, 881, 1448
AspA2I CCTAGG 1 cut(s) 199
AspLEI GCGC 4 cut(s) 517, 701, 1363, 1900
AspS9I GGNCC 8 cut(s) 43, 234, 372, 658, 901, 1249, 1350, 1490
AsuHPI GGTGA 9 cut(s) 293, 591, 760, 1235, 1385, 1432, 1469, 1488, 1795
AvaI CYCGRG 7 cut(s) 117, 332, 502, 945, 1480, 1683, 1920
AvaII GGWCC 6 cut(s) 43, 234, 372, 658, 901, 1350
AvrII CCTAGG 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 1705
BalI TGGCCA 1 cut(s) 326
BanI GGYRCC 4 cut(s) 195, 881, 1448, 2192
BanII GRGCYC 1 cut(s) 983
BauI CACGAG 3 cut(s) 521, 1171, 2009
BbsI GAAGAC 1 cut(s) 1086
Bbv12I GWGCWC 1 cut(s) 983
BccI CCATC 9 cut(s) 470, 478, 640, 1081, 1099, 1556, 1730, 1840, 2210
BceAI ACGGC 6 cut(s) 33, 608, 941, 1477, 1508, 1937
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciT130I CCWGG 5 cut(s) 390, 1124, 1445, 1664, 2150
BciVI GTATCC 3 cut(s) 435, 1211, 1735
BcoDI GTCTC 7 cut(s) 116, 140, 1184, 1682, 1960, 2150, 2208
BfaI CTAG 7 cut(s) 200, 762, 779, 833, 1019, 1157, 2120
BfmI CTRYAG 2 cut(s) 569, 1941
BfoI RGCGCY 2 cut(s) 518, 1364
BfuAI ACCTGC 1 cut(s) 1771
BfuI GTATCC 3 cut(s) 435, 1211, 1735
BlnI CCTAGG 1 cut(s) 199
Bme18I GGWCC 6 cut(s) 43, 234, 372, 658, 901, 1350
BmeT110I CYCGRG 7 cut(s) 117, 332, 502, 945, 1480, 1683, 1920
BmgT120I GGNCC 8 cut(s) 43, 234, 372, 658, 901, 1249, 1350, 1490
BmrI ACTGGG 2 cut(s) 252, 1356
BmsI GCATC 4 cut(s) 39, 576, 1123, 1686
BmuI ACTGGG 2 cut(s) 252, 1356
BpiI GAAGAC 1 cut(s) 1086
BplI GAGNNNNNCTC 6 cut(s) 965, 997, 1814, 1846, 2033, 2065
BpmI CTGGAG 4 cut(s) 1835, 2003, 2171, 2192
Bpu10I CCTNAGC 2 cut(s) 345, 461
BpuEI CTTGAG 2 cut(s) 706, 1898
Bsa29I ATCGAT 1 cut(s) 1691
BsaBI GATNNNNATC 2 cut(s) 1746, 2220
BsaHI GRCGYC 3 cut(s) 1149, 1402, 1728
BsaI GGTCTC 3 cut(s) 1184, 2150, 2208
BsaWI WCCGGW 6 cut(s) 192, 310, 445, 1298, 1451, 1528
BsaXI ACNNNNNCTCC 4 cut(s) 1409, 1439, 2015, 2045
Bse118I RCCGGY 5 cut(s) 192, 1315, 1398, 1451, 2195
Bse1I ACTGG 5 cut(s) 247, 872, 904, 1351, 1435
Bse8I GATNNNNATC 2 cut(s) 1746, 2220
BseBI CCWGG 5 cut(s) 390, 1124, 1445, 1664, 2150
BseCI ATCGAT 1 cut(s) 1691
BseGI GGATG 6 cut(s) 481, 591, 993, 1092, 1096, 1444
BseJI GATNNNNATC 2 cut(s) 1746, 2220
BseMII CTCAG 4 cut(s) 1833, 1884, 2049, 2219
BseNI ACTGG 5 cut(s) 247, 872, 904, 1351, 1435
BseRI GAGGAG 5 cut(s) 991, 1751, 1772, 1919, 2036
BseSI GKGCMC 1 cut(s) 1705
BsgI GTGCAG 3 cut(s) 503, 1124, 1280
Bsh1236I CGCG 5 cut(s) 103, 491, 699, 701, 1900
Bsh1285I CGRYCG 2 cut(s) 193, 1636
BshNI GGYRCC 4 cut(s) 195, 881, 1448, 2192
BshTI ACCGGT 2 cut(s) 192, 1451
BshVI ATCGAT 1 cut(s) 1691
BsiEI CGRYCG 2 cut(s) 193, 1636
BsiHKAI GWGCWC 1 cut(s) 983
BsiHKCI CYCGRG 7 cut(s) 117, 332, 502, 945, 1480, 1683, 1920
BslFI GGGAC 5 cut(s) 385, 671, 914, 1363, 1937
BsmAI GTCTC 7 cut(s) 116, 140, 1184, 1682, 1960, 2150, 2208
BsmBI CGTCTC 1 cut(s) 1960
BsmFI GGGAC 5 cut(s) 385, 671, 914, 1363, 1937
BsmI GAATGC 3 cut(s) 339, 625, 1921
Bso31I GGTCTC 3 cut(s) 1184, 2150, 2208
BsoBI CYCGRG 7 cut(s) 117, 332, 502, 945, 1480, 1683, 1920
Bsp1286I GDGCHC 2 cut(s) 983, 1705
Bsp19I CCATGG 1 cut(s) 1269
Bsp68I TCGCGA 1 cut(s) 103
BspCNI CTCAG 4 cut(s) 1834, 1885, 2048, 2218
BspDI ATCGAT 1 cut(s) 1691
BspFNI CGCG 5 cut(s) 103, 491, 699, 701, 1900
BspHI TCATGA 1 cut(s) 2085
BspMI ACCTGC 1 cut(s) 1771
BspPI GGATC 8 cut(s) 5, 304, 1226, 1380, 1492, 1620, 1995, 2229
BspT107I GGYRCC 4 cut(s) 195, 881, 1448, 2192
BspTNI GGTCTC 3 cut(s) 1184, 2150, 2208
BsrFI RCCGGY 5 cut(s) 192, 1315, 1398, 1451, 2195
BsrI ACTGG 5 cut(s) 247, 872, 904, 1351, 1435
BssAI RCCGGY 5 cut(s) 192, 1315, 1398, 1451, 2195
BssNI GRCGYC 3 cut(s) 1149, 1402, 1728
BssSI CACGAG 3 cut(s) 521, 1171, 2009
BssT1I CCWWGG 5 cut(s) 159, 199, 538, 1269, 1504
Bst2BI CACGAG 3 cut(s) 521, 1171, 2009
Bst2UI CCWGG 5 cut(s) 390, 1124, 1445, 1664, 2150
Bst4CI ACNGT 6 cut(s) 43, 85, 322, 573, 748, 1223
Bst6I CTCTTC 6 cut(s) 929, 1046, 1182, 1339, 1376, 1454
BstACI GRCGYC 3 cut(s) 1149, 1402, 1728
BstAPI GCANNNNNTGC 1 cut(s) 1603
BstC8I GCNNGC 7 cut(s) 174, 668, 1701, 1732, 2058, 2182, 2197
BstDEI CTNAG 7 cut(s) 345, 461, 470, 1842, 1893, 2035, 2205
BstDSI CCRYGG 2 cut(s) 1269, 1998
BstEII GGTNACC 1 cut(s) 748
BstF5I GGATG 6 cut(s) 481, 591, 993, 1092, 1096, 1444
BstFNI CGCG 5 cut(s) 103, 491, 699, 701, 1900
BstH2I RGCGCY 2 cut(s) 518, 1364
BstHHI GCGC 4 cut(s) 517, 701, 1363, 1900
BstMAI GTCTC 7 cut(s) 116, 140, 1184, 1682, 1960, 2150, 2208
BstMCI CGRYCG 2 cut(s) 193, 1636
BstMWI GCNNNNNNNGC 7 cut(s) 497, 586, 676, 1247, 1603, 1727, 1847
BstNI CCWGG 5 cut(s) 390, 1124, 1445, 1664, 2150
BstNSI RCATGY 3 cut(s) 361, 427, 1114
BstPI GGTNACC 1 cut(s) 748
BstSFI CTRYAG 2 cut(s) 569, 1941
BstSLI GKGCMC 1 cut(s) 1705
BstUI CGCG 5 cut(s) 103, 491, 699, 701, 1900
BstV2I GAAGAC 1 cut(s) 1086
BstX2I RGATCY 3 cut(s) 296, 1385, 1612
BstYI RGATCY 3 cut(s) 296, 1385, 1612
Bsu15I ATCGAT 1 cut(s) 1691
BsuI GTATCC 3 cut(s) 435, 1211, 1735
BsuTUI ATCGAT 1 cut(s) 1691
BtgI CCRYGG 2 cut(s) 1269, 1998
BtsCI GGATG 6 cut(s) 481, 591, 993, 1092, 1096, 1444
BtsIMutI CAGTG 2 cut(s) 327, 1428
BtuMI TCGCGA 1 cut(s) 103
BveI ACCTGC 1 cut(s) 1771
Cac8I GCNNGC 7 cut(s) 174, 668, 1701, 1732, 2058, 2182, 2197
CaiI CAGNNNCTG 2 cut(s) 577, 1561
CciI TCATGA 1 cut(s) 2085
CfoI GCGC 4 cut(s) 517, 701, 1363, 1900
Cfr10I RCCGGY 5 cut(s) 192, 1315, 1398, 1451, 2195
Cfr13I GGNCC 8 cut(s) 43, 234, 372, 658, 901, 1249, 1350, 1490
Cfr9I CCCGGG 4 cut(s) 502, 945, 1480, 1920
ClaI ATCGAT 1 cut(s) 1691
CseI GACGC 4 cut(s) 1103, 1247, 1391, 1736
CspAI ACCGGT 2 cut(s) 192, 1451
DdeI CTNAG 7 cut(s) 345, 461, 470, 1842, 1893, 2035, 2205
DraIII CACNNNGTG 1 cut(s) 1258
EaeI YGGCCR 5 cut(s) 324, 486, 1272, 1432, 1848
Eam1104I CTCTTC 6 cut(s) 929, 1046, 1182, 1339, 1376, 1454
EarI CTCTTC 6 cut(s) 929, 1046, 1182, 1339, 1376, 1454
Ecl136II GAGCTC 1 cut(s) 981
Eco130I CCWWGG 5 cut(s) 159, 199, 538, 1269, 1504
Eco24I GRGCYC 1 cut(s) 983
Eco31I GGTCTC 3 cut(s) 1184, 2150, 2208
Eco32I GATATC 1 cut(s) 1624
Eco47I GGWCC 6 cut(s) 43, 234, 372, 658, 901, 1350
Eco53kI GAGCTC 1 cut(s) 981
Eco57I CTGAAG 4 cut(s) 198, 452, 1637, 1772
Eco88I CYCGRG 7 cut(s) 117, 332, 502, 945, 1480, 1683, 1920
Eco91I GGTNACC 1 cut(s) 748
EcoICRI GAGCTC 1 cut(s) 981
EcoO109I RGGNCCY 2 cut(s) 234, 658
EcoO65I GGTNACC 1 cut(s) 748
EcoRII CCWGG 5 cut(s) 388, 1122, 1443, 1662, 2148
EcoRV GATATC 1 cut(s) 1624
EcoT14I CCWWGG 5 cut(s) 159, 199, 538, 1269, 1504
EcoT38I GRGCYC 1 cut(s) 983
ErhI CCWWGG 5 cut(s) 159, 199, 538, 1269, 1504
Esp3I CGTCTC 1 cut(s) 1960
FalI AAGNNNNNCTT 2 cut(s) 1179, 1211
FaqI GGGAC 5 cut(s) 385, 671, 914, 1363, 1937
FauI CCCGC 7 cut(s) 733, 1528, 1692, 1893, 2133, 2173, 2192
FauNDI CATATG 1 cut(s) 377
FblI GTMKAC 3 cut(s) 210, 420, 568
FokI GGATG 6 cut(s) 488, 598, 980, 1099, 1103, 1451
FriOI GRGCYC 1 cut(s) 983
FspBI CTAG 7 cut(s) 200, 762, 779, 833, 1019, 1157, 2120
GlaI GCGC 4 cut(s) 516, 700, 1362, 1899
GsuI CTGGAG 4 cut(s) 1835, 2003, 2171, 2192
HaeII RGCGCY 2 cut(s) 518, 1364
HgaI GACGC 4 cut(s) 1103, 1247, 1391, 1736
HhaI GCGC 4 cut(s) 517, 701, 1363, 1900
Hin1I GRCGYC 3 cut(s) 1149, 1402, 1728
Hin6I GCGC 4 cut(s) 515, 699, 1361, 1898
HinP1I GCGC 4 cut(s) 515, 699, 1361, 1898
HphI GGTGA 9 cut(s) 293, 591, 760, 1235, 1385, 1432, 1469, 1488, 1795
Hpy166II GTNNAC 8 cut(s) 184, 211, 421, 569, 706, 1226, 1428, 1717
Hpy188I TCNGA 9 cut(s) 256, 274, 922, 967, 1617, 1752, 1930, 2038, 2208
Hpy188III TCNNGA 8 cut(s) 46, 102, 119, 332, 1235, 1982, 2086, 2120
Hpy8I GTNNAC 8 cut(s) 184, 211, 421, 569, 706, 1226, 1428, 1717
Hpy99I CGWCG 7 cut(s) 43, 278, 386, 1151, 1154, 1241, 1730
HpyCH4III ACNGT 6 cut(s) 43, 85, 322, 573, 748, 1223
HpyCH4IV ACGT 2 cut(s) 1149, 1424
HpyCH4V TGCA 6 cut(s) 138, 172, 520, 1141, 1261, 1597
HpyF10VI GCNNNNNNNGC 7 cut(s) 497, 586, 676, 1247, 1603, 1727, 1847
HpyF3I CTNAG 7 cut(s) 345, 461, 470, 1842, 1893, 2035, 2205
HpySE526I ACGT 2 cut(s) 1149, 1424
Hsp92I GRCGYC 3 cut(s) 1149, 1402, 1728
HspAI GCGC 4 cut(s) 515, 699, 1361, 1898
KpnI GGTACC 3 cut(s) 199, 885, 1452
KroI GCCGGC 1 cut(s) 2195
KroNI GCCGGC 1 cut(s) 2197
LmnI GCTCC 7 cut(s) 313, 537, 978, 1038, 1246, 1822, 1873
LweI GCATC 4 cut(s) 39, 576, 1123, 1686
MaeI CTAG 7 cut(s) 200, 762, 779, 833, 1019, 1157, 2120
MaeII ACGT 2 cut(s) 1149, 1424
MaeIII GTNAC 7 cut(s) 316, 597, 748, 781, 1420, 1494, 1888
MflI RGATCY 3 cut(s) 296, 1385, 1612
MhlI GDGCHC 2 cut(s) 983, 1705
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 4 cut(s) 64, 167, 215, 2132
MluNI TGGCCA 1 cut(s) 326
MlyI GAGTC 6 cut(s) 278, 1183, 1823, 1919, 1955, 1970
MmeI TCCRAC 3 cut(s) 35, 297, 945
Mox20I TGGCCA 1 cut(s) 326
MroNI GCCGGC 1 cut(s) 2195
MscI TGGCCA 1 cut(s) 326
MseI TTAA 3 cut(s) 68, 1710, 2094
MslI CAYNNNNRTG 3 cut(s) 404, 1115, 1301
Msp20I TGGCCA 1 cut(s) 326
MspA1I CMGCKG 4 cut(s) 610, 874, 1558, 1864
Mva1269I GAATGC 3 cut(s) 339, 625, 1921
MvaI CCWGG 5 cut(s) 390, 1124, 1445, 1664, 2150
MvnI CGCG 5 cut(s) 103, 491, 699, 701, 1900
MwoI GCNNNNNNNGC 7 cut(s) 497, 586, 676, 1247, 1603, 1727, 1847
NaeI GCCGGC 1 cut(s) 2197
NcoI CCATGG 1 cut(s) 1269
NdeI CATATG 1 cut(s) 377
NgoMIV GCCGGC 1 cut(s) 2195
NmeAIII GCCGAG 1 cut(s) 375
NmuCI GTSAC 5 cut(s) 316, 597, 748, 1420, 1494
NruI TCGCGA 1 cut(s) 103
NspI RCATGY 3 cut(s) 361, 427, 1114
PaeR7I CTCGAG 1 cut(s) 117
PagI TCATGA 1 cut(s) 2085
PaqCI CACCTGC 1 cut(s) 1771
PcsI WCGNNNNNNNCGW 4 cut(s) 236, 1169, 1578, 1731
PctI GAATGC 3 cut(s) 339, 625, 1921
PdiI GCCGGC 1 cut(s) 2197
PfeI GAWTC 5 cut(s) 493, 526, 990, 1669, 1688
PfoI TCCNGGA 1 cut(s) 2148
PinAI ACCGGT 2 cut(s) 192, 1451
PleI GAGTC 6 cut(s) 277, 1182, 1823, 1919, 1954, 1970
PpsI GAGTC 6 cut(s) 277, 1182, 1823, 1919, 1954, 1970
PpuMI RGGWCCY 2 cut(s) 234, 658
Psp124BI GAGCTC 1 cut(s) 983
Psp5II RGGWCCY 2 cut(s) 234, 658
Psp6I CCWGG 5 cut(s) 388, 1122, 1443, 1662, 2148
PspEI GGTNACC 1 cut(s) 748
PspGI CCWGG 5 cut(s) 388, 1122, 1443, 1662, 2148
PspPI GGNCC 8 cut(s) 43, 234, 372, 658, 901, 1249, 1350, 1490
PspPPI RGGWCCY 2 cut(s) 234, 658
PstNI CAGNNNCTG 2 cut(s) 577, 1561
PsuI RGATCY 3 cut(s) 296, 1385, 1612
PvuII CAGCTG 3 cut(s) 610, 874, 1558
RruI TCGCGA 1 cut(s) 103
RseI CAYNNNNRTG 3 cut(s) 404, 1115, 1301
SacI GAGCTC 1 cut(s) 983
SaqAI TTAA 3 cut(s) 68, 1710, 2094
Sau96I GGNCC 8 cut(s) 43, 234, 372, 658, 901, 1249, 1350, 1490
SchI GAGTC 6 cut(s) 278, 1183, 1823, 1919, 1955, 1970
SduI GDGCHC 2 cut(s) 983, 1705
SfaNI GCATC 4 cut(s) 39, 576, 1123, 1686
SfcI CTRYAG 2 cut(s) 569, 1941
Sfr274I CTCGAG 1 cut(s) 117
SgrAI CRCCGGYG 1 cut(s) 1398
SinI GGWCC 6 cut(s) 43, 234, 372, 658, 901, 1350
SlaI CTCGAG 1 cut(s) 117
SmaI CCCGGG 4 cut(s) 504, 947, 1482, 1922
SmiMI CAYNNNNRTG 3 cut(s) 404, 1115, 1301
SmlI CTYRAG 3 cut(s) 117, 721, 1877
SmoI CTYRAG 3 cut(s) 117, 721, 1877
Sse9I AATT 4 cut(s) 64, 167, 215, 2132
SspMI CTAG 7 cut(s) 200, 762, 779, 833, 1019, 1157, 2120
SstI GAGCTC 1 cut(s) 983
StyI CCWWGG 5 cut(s) 159, 199, 538, 1269, 1504
TaaI ACNGT 6 cut(s) 43, 85, 322, 573, 748, 1223
TaiI ACGT 2 cut(s) 1152, 1427
TaqII GACCGA 1 cut(s) 1367
TasI AATT 4 cut(s) 64, 167, 215, 2132
TatI WGTACW 2 cut(s) 717, 2025
TauI GCSGC 6 cut(s) 430, 491, 761, 778, 1853, 2180
TfiI GAWTC 5 cut(s) 493, 526, 990, 1669, 1688
Tru1I TTAA 3 cut(s) 68, 1710, 2094
Tru9I TTAA 3 cut(s) 68, 1710, 2094
TscAI CASTG 2 cut(s) 327, 1435
TseFI GTSAC 5 cut(s) 316, 597, 748, 1420, 1494
Tsp45I GTSAC 5 cut(s) 316, 597, 748, 1420, 1494
TspDTI ATGAA 6 cut(s) 422, 982, 1582, 1599, 1784, 2102
TspGWI ACGGA 2 cut(s) 380, 2015
TspMI CCCGGG 4 cut(s) 502, 945, 1480, 1920
TspRI CASTG 2 cut(s) 327, 1435
VpaK11BI GGWCC 6 cut(s) 43, 234, 372, 658, 901, 1350
XapI RAATTY 2 cut(s) 64, 2132
XbaI TCTAGA 1 cut(s) 2119
XceI RCATGY 3 cut(s) 361, 427, 1114
XhoI CTCGAG 1 cut(s) 117
XmaI CCCGGG 4 cut(s) 502, 945, 1480, 1920
XmaJI CCTAGG 1 cut(s) 199
XmiI GTMKAC 3 cut(s) 210, 420, 568
XspI CTAG 7 cut(s) 200, 762, 779, 833, 1019, 1157, 2120
ZraI GACGTC 1 cut(s) 1150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.