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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 138 |
| AccBSI | CCGCTC | 1 cut(s) | 571 |
| AccII | CGCG | 1 cut(s) | 467 |
| AccIII | TCCGGA | 1 cut(s) | 165 |
| AciI | CCGC | 3 cut(s) | 266, 296, 571 |
| AclI | AACGTT | 1 cut(s) | 255 |
| AclWI | GGATC | 1 cut(s) | 140 |
| AfaI | GTAC | 3 cut(s) | 207, 386, 464 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 165, 185, 320, 445 |
| AgsI | TTSAA | 5 cut(s) | 79, 427, 457, 499, 583 |
| AluBI | AGCT | 2 cut(s) | 93, 559 |
| AluI | AGCT | 2 cut(s) | 93, 559 |
| Alw26I | GTCTC | 1 cut(s) | 521 |
| AlwI | GGATC | 1 cut(s) | 140 |
| Ama87I | CYCGRG | 1 cut(s) | 113 |
| Aor13HI | TCCGGA | 1 cut(s) | 165 |
| AoxI | GGCC | 1 cut(s) | 153 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 164, 196 |
| AspLEI | GCGC | 1 cut(s) | 408 |
| AspS9I | GGNCC | 1 cut(s) | 299 |
| AsuHPI | GGTGA | 1 cut(s) | 625 |
| AsuNHI | GCTAGC | 1 cut(s) | 476 |
| AvaI | CYCGRG | 1 cut(s) | 113 |
| AvaII | GGWCC | 1 cut(s) | 299 |
| AxyI | CCTNAGG | 1 cut(s) | 150 |
| BaeGI | GKGCMC | 2 cut(s) | 141, 451 |
| BanI | GGYRCC | 1 cut(s) | 138 |
| BanII | GRGCYC | 1 cut(s) | 327 |
| BccI | CCATC | 3 cut(s) | 79, 116, 371 |
| BceAI | ACGGC | 1 cut(s) | 298 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 385, 419 |
| BcoDI | GTCTC | 1 cut(s) | 521 |
| BfaI | CTAG | 1 cut(s) | 477 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 277 |
| Bme18I | GGWCC | 1 cut(s) | 299 |
| BmeT110I | CYCGRG | 1 cut(s) | 113 |
| BmgT120I | GGNCC | 1 cut(s) | 299 |
| BmiI | GGNNCC | 3 cut(s) | 140, 270, 300 |
| BmsI | GCATC | 3 cut(s) | 37, 402, 463 |
| BmtI | GCTAGC | 1 cut(s) | 480 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 560, 592 |
| BpmI | CTGGAG | 1 cut(s) | 581 |
| BsaBI | GATNNNNATC | 1 cut(s) | 66 |
| BsaI | GGTCTC | 1 cut(s) | 521 |
| BsaJI | CCNNGG | 3 cut(s) | 37, 314, 609 |
| BsaWI | WCCGGW | 2 cut(s) | 165, 301 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 165, 185, 320, 445 |
| Bse1I | ACTGG | 1 cut(s) | 250 |
| Bse21I | CCTNAGG | 1 cut(s) | 150 |
| Bse8I | GATNNNNATC | 1 cut(s) | 66 |
| BseAI | TCCGGA | 1 cut(s) | 165 |
| BseDI | CCNNGG | 3 cut(s) | 37, 314, 609 |
| BseJI | GATNNNNATC | 1 cut(s) | 66 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 165, 185, 320, 445 |
| BseNI | ACTGG | 1 cut(s) | 250 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseSI | GKGCMC | 2 cut(s) | 141, 451 |
| BsgI | GTGCAG | 1 cut(s) | 38 |
| Bsh1236I | CGCG | 1 cut(s) | 467 |
| Bsh1285I | CGRYCG | 1 cut(s) | 445 |
| BshFI | GGCC | 1 cut(s) | 155 |
| BshNI | GGYRCC | 1 cut(s) | 138 |
| BsiEI | CGRYCG | 1 cut(s) | 445 |
| BsiHKCI | CYCGRG | 1 cut(s) | 113 |
| BsiSI | CCGG | 4 cut(s) | 166, 211, 302, 335 |
| BslFI | GGGAC | 3 cut(s) | 312, 335, 587 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 165, 185, 320, 445 |
| BsmAI | GTCTC | 1 cut(s) | 521 |
| BsmFI | GGGAC | 3 cut(s) | 312, 335, 587 |
| BsnI | GGCC | 1 cut(s) | 155 |
| Bso31I | GGTCTC | 1 cut(s) | 521 |
| BsoBI | CYCGRG | 1 cut(s) | 113 |
| Bsp1286I | GDGCHC | 3 cut(s) | 141, 327, 451 |
| Bsp13I | TCCGGA | 1 cut(s) | 165 |
| Bsp143I | GATC | 3 cut(s) | 67, 145, 442 |
| Bsp19I | CCATGG | 1 cut(s) | 609 |
| BspACI | CCGC | 3 cut(s) | 266, 296, 571 |
| BspANI | GGCC | 1 cut(s) | 155 |
| BspEI | TCCGGA | 1 cut(s) | 165 |
| BspFNI | CGCG | 1 cut(s) | 467 |
| BspLI | GGNNCC | 3 cut(s) | 140, 270, 300 |
| BspOI | GCTAGC | 1 cut(s) | 480 |
| BspPI | GGATC | 1 cut(s) | 140 |
| BspT107I | GGYRCC | 1 cut(s) | 138 |
| BspTNI | GGTCTC | 1 cut(s) | 521 |
| BsrBI | CCGCTC | 1 cut(s) | 571 |
| BsrI | ACTGG | 1 cut(s) | 250 |
| BssECI | CCNNGG | 3 cut(s) | 37, 314, 609 |
| BssMI | GATC | 3 cut(s) | 67, 145, 442 |
| BssT1I | CCWWGG | 2 cut(s) | 37, 609 |
| Bst4CI | ACNGT | 1 cut(s) | 515 |
| Bst6I | CTCTTC | 1 cut(s) | 498 |
| BstC8I | GCNNGC | 3 cut(s) | 417, 478, 557 |
| BstDEI | CTNAG | 1 cut(s) | 150 |
| BstDSI | CCRYGG | 2 cut(s) | 314, 609 |
| BstFNI | CGCG | 1 cut(s) | 467 |
| BstHHI | GCGC | 1 cut(s) | 408 |
| BstKTI | GATC | 3 cut(s) | 70, 148, 445 |
| BstMAI | GTCTC | 1 cut(s) | 521 |
| BstMBI | GATC | 3 cut(s) | 67, 145, 442 |
| BstMCI | CGRYCG | 1 cut(s) | 445 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 277, 367, 412, 473 |
| BstSLI | GKGCMC | 2 cut(s) | 141, 451 |
| BstUI | CGCG | 1 cut(s) | 467 |
| Bsu36I | CCTNAGG | 1 cut(s) | 150 |
| BsuRI | GGCC | 1 cut(s) | 155 |
| BtgI | CCRYGG | 2 cut(s) | 314, 609 |
| BtgZI | GCGATG | 1 cut(s) | 98 |
| BtsIMutI | CAGTG | 1 cut(s) | 243 |
| Cac8I | GCNNGC | 3 cut(s) | 417, 478, 557 |
| CfoI | GCGC | 1 cut(s) | 408 |
| Cfr13I | GGNCC | 1 cut(s) | 299 |
| Csp6I | GTAC | 3 cut(s) | 206, 385, 463 |
| CviAII | CATG | 1 cut(s) | 610 |
| CviJI | RGCY | 9 cut(s) | 36, 93, 155, 178, 271, 319, 325, 361, 559 |
| CviKI_1 | RGCY | 9 cut(s) | 36, 93, 155, 178, 271, 319, 325, 361, 559 |
| CviQI | GTAC | 3 cut(s) | 206, 385, 463 |
| DdeI | CTNAG | 1 cut(s) | 150 |
| DpnI | GATC | 3 cut(s) | 69, 147, 444 |
| DpnII | GATC | 3 cut(s) | 67, 145, 442 |
| Eam1104I | CTCTTC | 1 cut(s) | 498 |
| EarI | CTCTTC | 1 cut(s) | 498 |
| EciI | GGCGGA | 1 cut(s) | 281 |
| Eco130I | CCWWGG | 2 cut(s) | 37, 609 |
| Eco147I | AGGCCT | 1 cut(s) | 155 |
| Eco24I | GRGCYC | 1 cut(s) | 327 |
| Eco31I | GGTCTC | 1 cut(s) | 521 |
| Eco47I | GGWCC | 1 cut(s) | 299 |
| Eco81I | CCTNAGG | 1 cut(s) | 150 |
| Eco88I | CYCGRG | 1 cut(s) | 113 |
| EcoT14I | CCWWGG | 2 cut(s) | 37, 609 |
| EcoT38I | GRGCYC | 1 cut(s) | 327 |
| ErhI | CCWWGG | 2 cut(s) | 37, 609 |
| FaeI | CATG | 1 cut(s) | 613 |
| FaiI | YATR | 5 cut(s) | 26, 32, 135, 434, 611 |
| FaqI | GGGAC | 3 cut(s) | 312, 335, 587 |
| FatI | CATG | 1 cut(s) | 609 |
| FauI | CCCGC | 2 cut(s) | 289, 564 |
| FriOI | GRGCYC | 1 cut(s) | 327 |
| FspBI | CTAG | 1 cut(s) | 477 |
| GlaI | GCGC | 1 cut(s) | 407 |
| GsuI | CTGGAG | 1 cut(s) | 581 |
| HaeIII | GGCC | 1 cut(s) | 155 |
| HapII | CCGG | 4 cut(s) | 166, 211, 302, 335 |
| HhaI | GCGC | 1 cut(s) | 408 |
| Hin1II | CATG | 1 cut(s) | 613 |
| Hin6I | GCGC | 1 cut(s) | 406 |
| HinP1I | GCGC | 1 cut(s) | 406 |
| HincII | GTYRAC | 1 cut(s) | 511 |
| HindII | GTYRAC | 1 cut(s) | 511 |
| HinfI | GANTC | 3 cut(s) | 340, 575, 596 |
| HpaI | GTTAAC | 1 cut(s) | 511 |
| HpaII | CCGG | 4 cut(s) | 166, 211, 302, 335 |
| HphI | GGTGA | 1 cut(s) | 625 |
| Hpy166II | GTNNAC | 2 cut(s) | 463, 511 |
| Hpy188III | TCNNGA | 2 cut(s) | 115, 166 |
| Hpy8I | GTNNAC | 2 cut(s) | 463, 511 |
| Hpy99I | CGWCG | 2 cut(s) | 131, 400 |
| HpyAV | CCTTC | 5 cut(s) | 73, 421, 493, 544, 559 |
| HpyCH4III | ACNGT | 1 cut(s) | 515 |
| HpyCH4IV | ACGT | 3 cut(s) | 234, 255, 402 |
| HpyCH4V | TGCA | 1 cut(s) | 55 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 277, 367, 412, 473 |
| HpyF3I | CTNAG | 1 cut(s) | 150 |
| HpySE526I | ACGT | 3 cut(s) | 234, 255, 402 |
| Hsp92II | CATG | 1 cut(s) | 613 |
| HspAI | GCGC | 1 cut(s) | 406 |
| Kpn2I | TCCGGA | 1 cut(s) | 165 |
| KspAI | GTTAAC | 1 cut(s) | 511 |
| Kzo9I | GATC | 3 cut(s) | 67, 145, 442 |
| LmnI | GCTCC | 3 cut(s) | 168, 268, 568 |
| LpnPI | CCDG | 9 cut(s) | 65, 179, 188, 224, 231, 306, 315, 348, 545 |
| LweI | GCATC | 3 cut(s) | 37, 402, 463 |
| MaeI | CTAG | 1 cut(s) | 477 |
| MaeII | ACGT | 3 cut(s) | 234, 255, 402 |
| MaeIII | GTNAC | 3 cut(s) | 196, 235, 613 |
| MalI | GATC | 3 cut(s) | 69, 147, 444 |
| MbiI | CCGCTC | 1 cut(s) | 571 |
| MboI | GATC | 3 cut(s) | 67, 145, 442 |
| MboII | GAAGA | 6 cut(s) | 56, 515, 530, 595, 598, 601 |
| MfeI | CAATTG | 1 cut(s) | 371 |
| MhlI | GDGCHC | 3 cut(s) | 141, 327, 451 |
| MluCI | AATT | 1 cut(s) | 371 |
| MlyI | GAGTC | 2 cut(s) | 569, 605 |
| MroI | TCCGGA | 1 cut(s) | 165 |
| MseI | TTAA | 4 cut(s) | 252, 258, 510, 602 |
| MslI | CAYNNNNRTG | 1 cut(s) | 60 |
| MspI | CCGG | 4 cut(s) | 166, 211, 302, 335 |
| MunI | CAATTG | 1 cut(s) | 371 |
| MvnI | CGCG | 1 cut(s) | 467 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 277, 367, 412, 473 |
| NcoI | CCATGG | 1 cut(s) | 609 |
| NdeII | GATC | 3 cut(s) | 67, 145, 442 |
| NheI | GCTAGC | 1 cut(s) | 476 |
| NlaIII | CATG | 1 cut(s) | 613 |
| NlaIV | GGNNCC | 3 cut(s) | 140, 270, 300 |
| NmuCI | GTSAC | 1 cut(s) | 613 |
| PaeR7I | CTCGAG | 1 cut(s) | 113 |
| PceI | AGGCCT | 1 cut(s) | 155 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 80 |
| PfeI | GAWTC | 1 cut(s) | 340 |
| Ple19I | CGATCG | 1 cut(s) | 445 |
| PleI | GAGTC | 2 cut(s) | 569, 604 |
| PpsI | GAGTC | 2 cut(s) | 569, 604 |
| Psp1406I | AACGTT | 1 cut(s) | 255 |
| PspN4I | GGNNCC | 3 cut(s) | 140, 270, 300 |
| PspPI | GGNCC | 1 cut(s) | 299 |
| PvuI | CGATCG | 1 cut(s) | 445 |
| RsaI | GTAC | 3 cut(s) | 207, 386, 464 |
| RsaNI | GTAC | 3 cut(s) | 206, 385, 463 |
| RseI | CAYNNNNRTG | 1 cut(s) | 60 |
| SaqAI | TTAA | 4 cut(s) | 252, 258, 510, 602 |
| Sau3AI | GATC | 3 cut(s) | 67, 145, 442 |
| Sau96I | GGNCC | 1 cut(s) | 299 |
| SchI | GAGTC | 2 cut(s) | 569, 605 |
| SduI | GDGCHC | 3 cut(s) | 141, 327, 451 |
| SetI | ASST | 9 cut(s) | 95, 237, 242, 258, 405, 441, 510, 561, 632 |
| SfaNI | GCATC | 3 cut(s) | 37, 402, 463 |
| Sfr274I | CTCGAG | 1 cut(s) | 113 |
| SinI | GGWCC | 1 cut(s) | 299 |
| SlaI | CTCGAG | 1 cut(s) | 113 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 60 |
| SmlI | CTYRAG | 1 cut(s) | 113 |
| SmoI | CTYRAG | 1 cut(s) | 113 |
| Sse9I | AATT | 1 cut(s) | 371 |
| SseBI | AGGCCT | 1 cut(s) | 155 |
| SsiI | CCGC | 3 cut(s) | 266, 296, 571 |
| SspMI | CTAG | 1 cut(s) | 477 |
| StuI | AGGCCT | 1 cut(s) | 155 |
| StyI | CCWWGG | 2 cut(s) | 37, 609 |
| TaaI | ACNGT | 1 cut(s) | 515 |
| TaiI | ACGT | 3 cut(s) | 237, 258, 405 |
| TaqI | TCGA | 4 cut(s) | 66, 114, 410, 441 |
| TasI | AATT | 1 cut(s) | 371 |
| TfiI | GAWTC | 1 cut(s) | 340 |
| Tru1I | TTAA | 4 cut(s) | 252, 258, 510, 602 |
| Tru9I | TTAA | 4 cut(s) | 252, 258, 510, 602 |
| TscAI | CASTG | 1 cut(s) | 250 |
| TseFI | GTSAC | 1 cut(s) | 613 |
| Tsp45I | GTSAC | 1 cut(s) | 613 |
| TspDTI | ATGAA | 2 cut(s) | 17, 117 |
| TspGWI | ACGGA | 1 cut(s) | 148 |
| TspRI | CASTG | 1 cut(s) | 250 |
| VpaK11BI | GGWCC | 1 cut(s) | 299 |
| XhoI | CTCGAG | 1 cut(s) | 113 |
| XspI | CTAG | 1 cut(s) | 477 |