Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 850 |
| Acc36I | ACCTGC | 1 cut(s) | 416 |
| AccB1I | GGYRCC | 2 cut(s) | 217, 835 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 570 |
| AccBSI | CCGCTC | 2 cut(s) | 266, 338 |
| AccI | GTMKAC | 1 cut(s) | 444 |
| AclWI | GGATC | 4 cut(s) | 276, 455, 1014, 1027 |
| AcoI | YGGCCR | 1 cut(s) | 204 |
| AcsI | RAATTY | 1 cut(s) | 418 |
| AcyI | GRCGYC | 1 cut(s) | 836 |
| AfaI | GTAC | 1 cut(s) | 327 |
| AfeI | AGCGCT | 1 cut(s) | 947 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 213, 347, 570 |
| AflIII | ACRYGT | 1 cut(s) | 849 |
| AgsI | TTSAA | 4 cut(s) | 314, 424, 580, 610 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1030 |
| AjnI | CCWGG | 1 cut(s) | 635 |
| AluBI | AGCT | 7 cut(s) | 73, 390, 483, 694, 712, 990, 1012 |
| AluI | AGCT | 7 cut(s) | 73, 390, 483, 694, 712, 990, 1012 |
| Alw21I | GWGCWC | 1 cut(s) | 148 |
| Alw26I | GTCTC | 2 cut(s) | 90, 694 |
| AlwI | GGATC | 4 cut(s) | 276, 455, 1014, 1027 |
| Ama87I | CYCGRG | 1 cut(s) | 30 |
| Aor51HI | AGCGCT | 1 cut(s) | 947 |
| AoxI | GGCC | 2 cut(s) | 27, 204 |
| ApeKI | GCWGC | 3 cut(s) | 722, 982, 1012 |
| ApoI | RAATTY | 1 cut(s) | 418 |
| AspLEI | GCGC | 2 cut(s) | 838, 948 |
| AspS9I | GGNCC | 2 cut(s) | 28, 964 |
| AsuC2I | CCSGG | 2 cut(s) | 31, 32 |
| AvaI | CYCGRG | 1 cut(s) | 30 |
| AvaII | GGWCC | 1 cut(s) | 964 |
| BaeGI | GKGCMC | 1 cut(s) | 220 |
| BamHI | GGATCC | 1 cut(s) | 1019 |
| BanI | GGYRCC | 2 cut(s) | 217, 835 |
| Bbv12I | GWGCWC | 1 cut(s) | 148 |
| BbvI | GCAGC | 3 cut(s) | 734, 969, 999 |
| BccI | CCATC | 3 cut(s) | 165, 298, 821 |
| BceAI | ACGGC | 1 cut(s) | 719 |
| BciT130I | CCWGG | 1 cut(s) | 637 |
| BcnI | CCSGG | 2 cut(s) | 31, 32 |
| BcoDI | GTCTC | 2 cut(s) | 90, 694 |
| BfaI | CTAG | 4 cut(s) | 41, 342, 738, 743 |
| BfoI | RGCGCY | 2 cut(s) | 839, 949 |
| BfuAI | ACCTGC | 1 cut(s) | 416 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 35 |
| BglII | AGATCT | 2 cut(s) | 7, 923 |
| BisI | GCNGC | 6 cut(s) | 36, 233, 723, 898, 983, 1013 |
| BlpI | GCTNAGC | 1 cut(s) | 986 |
| BlsI | GCNGC | 6 cut(s) | 37, 234, 724, 899, 984, 1014 |
| Bme1390I | CCNGG | 3 cut(s) | 31, 32, 637 |
| Bme18I | GGWCC | 1 cut(s) | 964 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1030 |
| BmeT110I | CYCGRG | 1 cut(s) | 30 |
| BmgT120I | GGNCC | 2 cut(s) | 28, 964 |
| BmiI | GGNNCC | 4 cut(s) | 219, 353, 837, 1021 |
| BmrFI | CCNGG | 3 cut(s) | 31, 32, 637 |
| BmrI | ACTGGG | 1 cut(s) | 280 |
| BmsI | GCATC | 4 cut(s) | 72, 265, 426, 508 |
| BmuI | ACTGGG | 1 cut(s) | 280 |
| BpmI | CTGGAG | 2 cut(s) | 572, 734 |
| Bpu10I | CCTNAGC | 1 cut(s) | 228 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 986 |
| BpuEI | CTTGAG | 1 cut(s) | 692 |
| BpuMI | CCSGG | 2 cut(s) | 31, 32 |
| BsaHI | GRCGYC | 1 cut(s) | 836 |
| BsaJI | CCNNGG | 2 cut(s) | 30, 750 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 213, 347, 570 |
| Bse118I | RCCGGY | 1 cut(s) | 206 |
| Bse1I | ACTGG | 2 cut(s) | 207, 286 |
| BseBI | CCWGG | 1 cut(s) | 637 |
| BseDI | CCNNGG | 2 cut(s) | 30, 750 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 213, 347, 570 |
| BseMII | CTCAG | 4 cut(s) | 820, 915, 1000, 1008 |
| BseNI | ACTGG | 2 cut(s) | 207, 286 |
| BseSI | GKGCMC | 1 cut(s) | 220 |
| BseXI | GCAGC | 3 cut(s) | 734, 969, 999 |
| BsgI | GTGCAG | 1 cut(s) | 741 |
| Bsh1285I | CGRYCG | 1 cut(s) | 773 |
| BshFI | GGCC | 2 cut(s) | 29, 206 |
| BshNI | GGYRCC | 2 cut(s) | 217, 835 |
| BsiEI | CGRYCG | 1 cut(s) | 773 |
| BsiHKAI | GWGCWC | 1 cut(s) | 148 |
| BsiHKCI | CYCGRG | 1 cut(s) | 30 |
| BsiSI | CCGG | 2 cut(s) | 31, 207 |
| BslFI | GGGAC | 1 cut(s) | 1013 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 213, 347, 570 |
| BsmAI | GTCTC | 2 cut(s) | 90, 694 |
| BsmBI | CGTCTC | 1 cut(s) | 694 |
| BsmFI | GGGAC | 1 cut(s) | 1013 |
| BsnI | GGCC | 2 cut(s) | 29, 206 |
| BsoBI | CYCGRG | 1 cut(s) | 30 |
| Bsp1286I | GDGCHC | 2 cut(s) | 148, 220 |
| Bsp143I | GATC | 5 cut(s) | 7, 268, 460, 923, 1019 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 986 |
| BspANI | GGCC | 2 cut(s) | 29, 206 |
| BspCNI | CTCAG | 4 cut(s) | 819, 914, 999, 1007 |
| BspHI | TCATGA | 1 cut(s) | 858 |
| BspLI | GGNNCC | 4 cut(s) | 219, 353, 837, 1021 |
| BspMI | ACCTGC | 1 cut(s) | 416 |
| BspPI | GGATC | 4 cut(s) | 276, 455, 1014, 1027 |
| BspT107I | GGYRCC | 2 cut(s) | 217, 835 |
| BsrBI | CCGCTC | 2 cut(s) | 266, 338 |
| BsrFI | RCCGGY | 1 cut(s) | 206 |
| BsrI | ACTGG | 2 cut(s) | 207, 286 |
| BssAI | RCCGGY | 1 cut(s) | 206 |
| BssECI | CCNNGG | 2 cut(s) | 30, 750 |
| BssMI | GATC | 5 cut(s) | 7, 268, 460, 923, 1019 |
| BssNI | GRCGYC | 1 cut(s) | 836 |
| BssT1I | CCWWGG | 1 cut(s) | 750 |
| Bst2UI | CCWGG | 1 cut(s) | 637 |
| Bst4CI | ACNGT | 2 cut(s) | 119, 150 |
| Bst6I | CTCTTC | 1 cut(s) | 88 |
| BstACI | GRCGYC | 1 cut(s) | 836 |
| BstC8I | GCNNGC | 2 cut(s) | 27, 216 |
| BstDEI | CTNAG | 5 cut(s) | 228, 806, 901, 986, 994 |
| BstH2I | RGCGCY | 2 cut(s) | 839, 949 |
| BstHHI | GCGC | 2 cut(s) | 838, 948 |
| BstKTI | GATC | 5 cut(s) | 10, 271, 463, 926, 1022 |
| BstMAI | GTCTC | 2 cut(s) | 90, 694 |
| BstMBI | GATC | 5 cut(s) | 7, 268, 460, 923, 1019 |
| BstMCI | CGRYCG | 1 cut(s) | 773 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 35, 775 |
| BstNI | CCWGG | 1 cut(s) | 637 |
| BstNSI | RCATGY | 2 cut(s) | 626, 853 |
| BstSCI | CCNGG | 3 cut(s) | 29, 30, 635 |
| BstSLI | GKGCMC | 1 cut(s) | 220 |
| BstV1I | GCAGC | 3 cut(s) | 734, 969, 999 |
| BstX2I | RGATCY | 3 cut(s) | 7, 923, 1019 |
| BstYI | RGATCY | 3 cut(s) | 7, 923, 1019 |
| BsuRI | GGCC | 2 cut(s) | 29, 206 |
| BtsI | GCAGTG | 2 cut(s) | 139, 886 |
| BtsIMutI | CAGTG | 4 cut(s) | 139, 839, 886, 909 |
| BveI | ACCTGC | 1 cut(s) | 416 |
| Cac8I | GCNNGC | 2 cut(s) | 27, 216 |
| CciI | TCATGA | 1 cut(s) | 858 |
| CfoI | GCGC | 2 cut(s) | 838, 948 |
| Cfr10I | RCCGGY | 1 cut(s) | 206 |
| Cfr13I | GGNCC | 2 cut(s) | 28, 964 |
| Cfr9I | CCCGGG | 1 cut(s) | 30 |
| Csp6I | GTAC | 1 cut(s) | 326 |
| CviQI | GTAC | 1 cut(s) | 326 |
| DdeI | CTNAG | 5 cut(s) | 228, 806, 901, 986, 994 |
| DinI | GGCGCC | 1 cut(s) | 837 |
| DpnI | GATC | 5 cut(s) | 9, 270, 462, 925, 1021 |
| DpnII | GATC | 5 cut(s) | 7, 268, 460, 923, 1019 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 850 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1030 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 850 |
| EaeI | YGGCCR | 1 cut(s) | 204 |
| Eam1104I | CTCTTC | 1 cut(s) | 88 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1030 |
| EarI | CTCTTC | 1 cut(s) | 88 |
| EciI | GGCGGA | 2 cut(s) | 179, 826 |
| Eco130I | CCWWGG | 1 cut(s) | 750 |
| Eco47I | GGWCC | 1 cut(s) | 964 |
| Eco47III | AGCGCT | 1 cut(s) | 947 |
| Eco88I | CYCGRG | 1 cut(s) | 30 |
| EcoRII | CCWGG | 1 cut(s) | 635 |
| EcoT14I | CCWWGG | 1 cut(s) | 750 |
| EcoT22I | ATGCAT | 1 cut(s) | 87 |
| EgeI | GGCGCC | 1 cut(s) | 837 |
| EheI | GGCGCC | 1 cut(s) | 837 |
| ErhI | CCWWGG | 1 cut(s) | 750 |
| Esp3I | CGTCTC | 1 cut(s) | 694 |
| FaqI | GGGAC | 1 cut(s) | 1013 |
| FauI | CCCGC | 1 cut(s) | 207 |
| FauNDI | CATATG | 1 cut(s) | 466 |
| FblI | GTMKAC | 1 cut(s) | 444 |
| Fnu4HI | GCNGC | 6 cut(s) | 36, 233, 723, 898, 983, 1013 |
| Fsp4HI | GCNGC | 6 cut(s) | 36, 233, 723, 898, 983, 1013 |
| FspBI | CTAG | 4 cut(s) | 41, 342, 738, 743 |
| GlaI | GCGC | 2 cut(s) | 837, 947 |
| GluI | GCNGC | 6 cut(s) | 36, 233, 723, 898, 983, 1013 |
| GsuI | CTGGAG | 2 cut(s) | 572, 734 |
| HaeII | RGCGCY | 2 cut(s) | 839, 949 |
| HaeIII | GGCC | 2 cut(s) | 29, 206 |
| HapII | CCGG | 2 cut(s) | 31, 207 |
| HhaI | GCGC | 2 cut(s) | 838, 948 |
| Hin1I | GRCGYC | 1 cut(s) | 836 |
| Hin6I | GCGC | 2 cut(s) | 836, 946 |
| HinP1I | GCGC | 2 cut(s) | 836, 946 |
| HincII | GTYRAC | 1 cut(s) | 294 |
| HindII | GTYRAC | 1 cut(s) | 294 |
| HinfI | GANTC | 2 cut(s) | 104, 602 |
| HpaII | CCGG | 2 cut(s) | 31, 207 |
| Hpy166II | GTNNAC | 3 cut(s) | 294, 384, 445 |
| Hpy188I | TCNGA | 4 cut(s) | 452, 923, 952, 1024 |
| Hpy188III | TCNNGA | 8 cut(s) | 41, 123, 272, 397, 487, 665, 699, 859 |
| Hpy8I | GTNNAC | 3 cut(s) | 294, 384, 445 |
| Hpy99I | CGWCG | 1 cut(s) | 737 |
| HpyAV | CCTTC | 4 cut(s) | 231, 616, 650, 668 |
| HpyCH4III | ACNGT | 2 cut(s) | 119, 150 |
| HpyCH4V | TGCA | 5 cut(s) | 17, 85, 278, 722, 778 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 35, 775 |
| HpyF3I | CTNAG | 5 cut(s) | 228, 806, 901, 986, 994 |
| Hsp92I | GRCGYC | 1 cut(s) | 836 |
| HspAI | GCGC | 2 cut(s) | 836, 946 |
| KasI | GGCGCC | 1 cut(s) | 835 |
| Kzo9I | GATC | 5 cut(s) | 7, 268, 460, 923, 1019 |
| LmnI | GCTCC | 3 cut(s) | 143, 263, 343 |
| Lsp1109I | GCAGC | 3 cut(s) | 734, 969, 999 |
| LweI | GCATC | 4 cut(s) | 72, 265, 426, 508 |
| MaeI | CTAG | 4 cut(s) | 41, 342, 738, 743 |
| MaeIII | GTNAC | 2 cut(s) | 493, 929 |
| MalI | GATC | 5 cut(s) | 9, 270, 462, 925, 1021 |
| MbiI | CCGCTC | 2 cut(s) | 266, 338 |
| MboI | GATC | 5 cut(s) | 7, 268, 460, 923, 1019 |
| MboII | GAAGA | 4 cut(s) | 105, 138, 331, 568 |
| MfeI | CAATTG | 2 cut(s) | 279, 533 |
| MflI | RGATCY | 3 cut(s) | 7, 923, 1019 |
| MhlI | GDGCHC | 2 cut(s) | 148, 220 |
| MluCI | AATT | 5 cut(s) | 279, 418, 533, 614, 888 |
| Mly113I | GGCGCC | 1 cut(s) | 836 |
| MnlI | CCTC | 7 cut(s) | 57, 62, 197, 498, 547, 653, 736 |
| Mph1103I | ATGCAT | 1 cut(s) | 87 |
| MseI | TTAA | 7 cut(s) | 539, 617, 647, 684, 816, 887, 909 |
| MspA1I | CMGCKG | 2 cut(s) | 982, 1012 |
| MspI | CCGG | 2 cut(s) | 31, 207 |
| MspR9I | CCNGG | 3 cut(s) | 31, 32, 637 |
| MunI | CAATTG | 2 cut(s) | 279, 533 |
| MvaI | CCWGG | 1 cut(s) | 637 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 35, 775 |
| NarI | GGCGCC | 1 cut(s) | 836 |
| NciI | CCSGG | 2 cut(s) | 31, 32 |
| NdeI | CATATG | 1 cut(s) | 466 |
| NdeII | GATC | 5 cut(s) | 7, 268, 460, 923, 1019 |
| NlaIV | GGNNCC | 4 cut(s) | 219, 353, 837, 1021 |
| NmuCI | GTSAC | 1 cut(s) | 929 |
| NsiI | ATGCAT | 1 cut(s) | 87 |
| NspI | RCATGY | 2 cut(s) | 626, 853 |
| PagI | TCATGA | 1 cut(s) | 858 |
| PciI | ACATGT | 1 cut(s) | 849 |
| PfeI | GAWTC | 2 cut(s) | 104, 602 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 570 |
| PkrI | GCNGC | 6 cut(s) | 37, 234, 724, 899, 984, 1014 |
| PluTI | GGCGCC | 1 cut(s) | 839 |
| PscI | ACATGT | 1 cut(s) | 849 |
| Psp6I | CCWGG | 1 cut(s) | 635 |
| PspGI | CCWGG | 1 cut(s) | 635 |
| PspN4I | GGNNCC | 4 cut(s) | 219, 353, 837, 1021 |
| PspPI | GGNCC | 2 cut(s) | 28, 964 |
| PsuI | RGATCY | 3 cut(s) | 7, 923, 1019 |
| PvuII | CAGCTG | 1 cut(s) | 1012 |
| RsaI | GTAC | 1 cut(s) | 327 |
| RsaNI | GTAC | 1 cut(s) | 326 |
| SaqAI | TTAA | 7 cut(s) | 539, 617, 647, 684, 816, 887, 909 |
| SatI | GCNGC | 6 cut(s) | 36, 233, 723, 898, 983, 1013 |
| Sau3AI | GATC | 5 cut(s) | 7, 268, 460, 923, 1019 |
| Sau96I | GGNCC | 2 cut(s) | 28, 964 |
| ScrFI | CCNGG | 3 cut(s) | 31, 32, 637 |
| SduI | GDGCHC | 2 cut(s) | 148, 220 |
| SfaNI | GCATC | 4 cut(s) | 72, 265, 426, 508 |
| SfoI | GGCGCC | 1 cut(s) | 837 |
| SinI | GGWCC | 1 cut(s) | 964 |
| SmaI | CCCGGG | 1 cut(s) | 32 |
| SmlI | CTYRAG | 1 cut(s) | 707 |
| SmoI | CTYRAG | 1 cut(s) | 707 |
| SrfI | GCCCGGGC | 1 cut(s) | 32 |
| Sse9I | AATT | 5 cut(s) | 279, 418, 533, 614, 888 |
| SspDI | GGCGCC | 1 cut(s) | 835 |
| SspI | AATATT | 1 cut(s) | 512 |
| SspMI | CTAG | 4 cut(s) | 41, 342, 738, 743 |
| StyD4I | CCNGG | 3 cut(s) | 29, 30, 635 |
| StyI | CCWWGG | 1 cut(s) | 750 |
| TaaI | ACNGT | 2 cut(s) | 119, 150 |
| TaqI | TCGA | 3 cut(s) | 124, 177, 698 |
| TasI | AATT | 5 cut(s) | 279, 418, 533, 614, 888 |
| TatI | WGTACW | 1 cut(s) | 325 |
| TauI | GCSGC | 3 cut(s) | 38, 235, 900 |
| TfiI | GAWTC | 2 cut(s) | 104, 602 |
| Tru1I | TTAA | 7 cut(s) | 539, 617, 647, 684, 816, 887, 909 |
| Tru9I | TTAA | 7 cut(s) | 539, 617, 647, 684, 816, 887, 909 |
| TscAI | CASTG | 4 cut(s) | 139, 846, 886, 909 |
| TseFI | GTSAC | 1 cut(s) | 929 |
| TseI | GCWGC | 3 cut(s) | 722, 982, 1012 |
| Tsp45I | GTSAC | 1 cut(s) | 929 |
| TspDTI | ATGAA | 3 cut(s) | 17, 102, 990 |
| TspGWI | ACGGA | 2 cut(s) | 331, 1024 |
| TspMI | CCCGGG | 1 cut(s) | 30 |
| TspRI | CASTG | 4 cut(s) | 139, 846, 886, 909 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 570 |
| VpaK11BI | GGWCC | 1 cut(s) | 964 |
| XapI | RAATTY | 1 cut(s) | 418 |
| XbaI | TCTAGA | 1 cut(s) | 40 |
| XceI | RCATGY | 2 cut(s) | 626, 853 |
| XmaI | CCCGGG | 1 cut(s) | 30 |
| XmiI | GTMKAC | 1 cut(s) | 444 |
| XspI | CTAG | 4 cut(s) | 41, 342, 738, 743 |
| Zsp2I | ATGCAT | 1 cut(s) | 87 |