Rroxscaffold_7G00199290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000012
Physical Location & Seq
Forward (+)
45643633 .. 45653410
9778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199290.1

Sequence Viewer

Length: 462 bp
ATGACGCCACCCTCTCGCCACTTGTTAAGTGAAACGCCGGACGGTGAGGGGATGAGTTGTTTCTTTGAATGCCCGCCAAGGTCCATTGATTTGTTCAATGCGCTATCAAATGCTTTCCTCTCGTGGTTCATCTTATTGGCTGCTGGACACCACAATACATCCCAGCCTATTCGACCTCAAGCAAGGGGCGGAGGAAACATTAAAGGCGTTTGTCACTGTGTGGCGAGCGGCAACATCCCGTGCCGGGATCTCAATGGGCCATTTCTTTATCACCTCAATTACAATCATACAAATGCCTCTTATGACCATGTCATGAGCGAGGTTGTCATACATGCACAGCAGAATTCATCACTTATAATGGGCCACGCTCATGCTACCTCCGGCGGTGCGTACTCCCGCCAAAGGAGTGACCTACGGGAGCATCGCCAAGTGGGCTACCGCCCGAGCCTCGCTTGCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.8

Weight (kDa)

7.74

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000012)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28590 FvH4_1g28873 FvH4_1g29421 FvH4_3g30612 FvH4_4g08351 FvH4_5g00051 FvH4_5g00052 FvH4_6g23091
malus_domestica MD04G1081500.v1.1
rosa_chinensis RchiOBHm_Chr2g0087241 RchiOBHm_Chr2g0114831
rosa_laevigata RLG00000029015
rosa_multiflora Rmu_co7964414.1_g000001 Rmu_co7980906.1_g000001 Rmu_co8005766.1_g000001 Rmu_co8047366.1_g000001 Rmu_co8063302.1_g000001 Rmu_co8079752.1_g000001 Rmu_co8101720.1_g000001 Rmu_co8118790.1_g000001 Rmu_co8136020.1_g000001 Rmu_co8142966.1_g000001 Rmu_co8147912.1_g000001 Rmu_co8169262.1_g000001 Rmu_co8191390.1_g000001 Rmu_co8194052.1_g000001 Rmu_co8197616.1_g000001 Rmu_co8199862.1_g000001 Rmu_co8204128.1_g000002 Rmu_co8204440.1_g000002 Rmu_co8205696.1_g000001 Rmu_co8218142.1_g000001 Rmu_co8221254.1_g000001 Rmu_co8223608.1_g000002 Rmu_co8223626.1_g000001 Rmu_co8227149.1_g000001 Rmu_co8237079.1_g000001 Rmu_co8246167.1_g000001 Rmu_co8256485.1_g000001 Rmu_co8274405.1_g000001 Rmu_co8278411.1_g000001 Rmu_co8291785.1_g000001 Rmu_co8293365.1_g000001 Rmu_co8305301.1_g000001 Rmu_co8312823.1_g000001 Rmu_co8317357.1_g000001 Rmu_co8324793.1_g000001 Rmu_co8334119.1_g000001 Rmu_co8344381.1_g000001 Rmu_co8345225.1_g000001 Rmu_co8355661.1_g000001 Rmu_co8365337.1_g000001 Rmu_co8376357.1_g000001 Rmu_co8382747.1_g000001 Rmu_co8384149.1_g000001 Rmu_co8385415.1_g000002 Rmu_co8401669.1_g000002 Rmu_co8402097.1_g000001 Rmu_co8406229.1_g000001 Rmu_co8406805.1_g000001 Rmu_co8411443.1_g000002 Rmu_co8412007.1_g000002 Rmu_co8412129.1_g000002 Rmu_co8414389.1_g000001 Rmu_co8417429.1_g000001 Rmu_co8418135.1_g000002 Rmu_co8427823.1_g000001 Rmu_co8434337.1_g000001 Rmu_co8440385.1_g000002 Rmu_co8442395.1_g000001 Rmu_co8444287.1_g000001 Rmu_co8454015.1_g000001 Rmu_co8457949.1_g000001 Rmu_co8464897.1_g000002 Rmu_co8466485.1_g000002 Rmu_co8467011.1_g000001 Rmu_co8477109.1_g000002 Rmu_co8479675.1_g000001 Rmu_co8479865.1_g000002 Rmu_co8484273.1_g000002 Rmu_co8484537.1_g000001 Rmu_co8487357.1_g000002 Rmu_co8496813.1_g000001 Rmu_co8496815.1_g000001 Rmu_co8498003.1_g000003 Rmu_co8500745.1_g000001 Rmu_co8513491.1_g000001 Rmu_co8513491.1_g000002 Rmu_co8521719.1_g000001 Rmu_sc0000015.1_g000043 Rmu_sc0000045.1_g000069 Rmu_sc0000070.1_g000020 Rmu_sc0000070.1_g000023 Rmu_sc0000082.1_g000014 Rmu_sc0000082.1_g000047 Rmu_sc0000082.1_g000075 Rmu_sc0000144.1_g000063 Rmu_sc0000149.1_g000039 Rmu_sc0000157.1_g000029 Rmu_sc0000184.1_g000002 Rmu_sc0000212.1_g000007 Rmu_sc0000218.1_g000049 Rmu_sc0000221.1_g000021 Rmu_sc0000235.1_g000021 Rmu_sc0000236.1_g000012 Rmu_sc0000239.1_g000029 Rmu_sc0000239.1_g000068 Rmu_sc0000243.1_g000026 Rmu_sc0000253.1_g000006 Rmu_sc0000258.1_g000031 Rmu_sc0000263.1_g000012 Rmu_sc0000263.1_g000013 Rmu_sc0000276.1_g000055 Rmu_sc0000276.1_g000057 Rmu_sc0000279.1_g000056 Rmu_sc0000302.1_g000030 Rmu_sc0000309.1_g000020 Rmu_sc0000335.1_g000073 Rmu_sc0000335.1_g000117 Rmu_sc0000365.1_g000019 Rmu_sc0000365.1_g000070 Rmu_sc0000367.1_g000230 Rmu_sc0000429.1_g000065 Rmu_sc0000470.1_g000030 Rmu_sc0000473.1_g000010 Rmu_sc0000480.1_g000010 Rmu_sc0000538.1_g000015 Rmu_sc0000538.1_g000032 Rmu_sc0000546.1_g000009 Rmu_sc0000546.1_g000039 Rmu_sc0000565.1_g000009 Rmu_sc0000573.1_g000045 Rmu_sc0000574.1_g000029 Rmu_sc0000580.1_g000024 Rmu_sc0000585.1_g000020 Rmu_sc0000613.1_g000039 Rmu_sc0000619.1_g000008 Rmu_sc0000638.1_g000011 Rmu_sc0000642.1_g000006 Rmu_sc0000662.1_g000025 Rmu_sc0000674.1_g000041 Rmu_sc0000677.1_g000038 Rmu_sc0000687.1_g000002 Rmu_sc0000690.1_g000042 Rmu_sc0000744.1_g000016 Rmu_sc0000744.1_g000031 Rmu_sc0000744.1_g000093 Rmu_sc0000765.1_g000017 Rmu_sc0000772.1_g000015 Rmu_sc0000790.1_g000008 Rmu_sc0000824.1_g000022 Rmu_sc0000829.1_g000007 Rmu_sc0000857.1_g000003 Rmu_sc0000876.1_g000021 Rmu_sc0000898.1_g000064 Rmu_sc0000905.1_g000009 Rmu_sc0000924.1_g000026 Rmu_sc0000959.1_g000016 Rmu_sc0000959.1_g000017 Rmu_sc0000999.1_g000025 Rmu_sc0001010.1_g000051 Rmu_sc0001016.1_g000059 Rmu_sc0001016.1_g000069 Rmu_sc0001023.1_g000063 Rmu_sc0001054.1_g000006 Rmu_sc0001073.1_g000015 Rmu_sc0001127.1_g000011 Rmu_sc0001141.1_g000026 Rmu_sc0001149.1_g000020 Rmu_sc0001152.1_g000029 Rmu_sc0001163.1_g000012 Rmu_sc0001163.1_g000048 Rmu_sc0001170.1_g000019 Rmu_sc0001180.1_g000010 Rmu_sc0001206.1_g000009 Rmu_sc0001211.1_g000073 Rmu_sc0001218.1_g000024 Rmu_sc0001218.1_g000032 Rmu_sc0001242.1_g000009 Rmu_sc0001306.1_g000004 Rmu_sc0001306.1_g000005 Rmu_sc0001325.1_g000002 Rmu_sc0001336.1_g000016 Rmu_sc0001336.1_g000067 Rmu_sc0001355.1_g000031 Rmu_sc0001362.1_g000006 Rmu_sc0001365.1_g000016 Rmu_sc0001393.1_g000015 Rmu_sc0001393.1_g000029 Rmu_sc0001393.1_g000034 Rmu_sc0001398.1_g000015 Rmu_sc0001423.1_g000006 Rmu_sc0001436.1_g000039 Rmu_sc0001443.1_g000007 Rmu_sc0001443.1_g000010 Rmu_sc0001464.1_g000007 Rmu_sc0001468.1_g000027 Rmu_sc0001498.1_g000008 Rmu_sc0001499.1_g000034 Rmu_sc0001499.1_g000051 Rmu_sc0001524.1_g000054 Rmu_sc0001552.1_g000027 Rmu_sc0001567.1_g000003 Rmu_sc0001572.1_g000005 Rmu_sc0001620.1_g000001 Rmu_sc0001626.1_g000030 Rmu_sc0001631.1_g000022 Rmu_sc0001656.1_g000008 Rmu_sc0001668.1_g000008 Rmu_sc0001694.1_g000040 Rmu_sc0001696.1_g000014 Rmu_sc0001744.1_g000043 Rmu_sc0001782.1_g000007 Rmu_sc0001796.1_g000014 Rmu_sc0001849.1_g000021 Rmu_sc0001849.1_g000087 Rmu_sc0001861.1_g000015 Rmu_sc0001861.1_g000053 Rmu_sc0001867.1_g000008 Rmu_sc0001891.1_g000030 Rmu_sc0001916.1_g000008 Rmu_sc0001924.1_g000032 Rmu_sc0001966.1_g000043 Rmu_sc0002002.1_g000025 Rmu_sc0002048.1_g000047 Rmu_sc0002061.1_g000019 Rmu_sc0002081.1_g000021 Rmu_sc0002082.1_g000083 Rmu_sc0002105.1_g000038 Rmu_sc0002129.1_g000029 Rmu_sc0002131.1_g000047 Rmu_sc0002192.1_g000029 Rmu_sc0002197.1_g000021 Rmu_sc0002212.1_g000024 Rmu_sc0002235.1_g000026 Rmu_sc0002235.1_g000055 Rmu_sc0002235.1_g000063 Rmu_sc0002235.1_g000069 Rmu_sc0002272.1_g000004 Rmu_sc0002302.1_g000006 Rmu_sc0002308.1_g000024 Rmu_sc0002312.1_g000014 Rmu_sc0002312.1_g000055 Rmu_sc0002322.1_g000054 Rmu_sc0002332.1_g000012 Rmu_sc0002350.1_g000018 Rmu_sc0002354.1_g000031 Rmu_sc0002369.1_g000039 Rmu_sc0002371.1_g000011 Rmu_sc0002460.1_g000004 Rmu_sc0002476.1_g000009 Rmu_sc0002482.1_g000020 Rmu_sc0002504.1_g000009 Rmu_sc0002508.1_g000028 Rmu_sc0002522.1_g000010 Rmu_sc0002539.1_g000058 Rmu_sc0002549.1_g000016 Rmu_sc0002584.1_g000007 Rmu_sc0002584.1_g000037 Rmu_sc0002591.1_g000002 Rmu_sc0002604.1_g000023 Rmu_sc0002607.1_g000057 Rmu_sc0002656.1_g000010 Rmu_sc0002690.1_g000025 Rmu_sc0002691.1_g000023 Rmu_sc0002701.1_g000010 Rmu_sc0002718.1_g000023 Rmu_sc0002723.1_g000024 Rmu_sc0002764.1_g000026 Rmu_sc0002798.1_g000013 Rmu_sc0002798.1_g000014 Rmu_sc0002889.1_g000010 Rmu_sc0002892.1_g000038 Rmu_sc0002893.1_g000003 Rmu_sc0002919.1_g000008 Rmu_sc0002927.1_g000038 Rmu_sc0002938.1_g000033 Rmu_sc0002942.1_g000035 Rmu_sc0002983.1_g000055 Rmu_sc0003002.1_g000054 Rmu_sc0003024.1_g000013 Rmu_sc0003031.1_g000065 Rmu_sc0003040.1_g000001 Rmu_sc0003044.1_g000006 Rmu_sc0003044.1_g000016 Rmu_sc0003069.1_g000037 Rmu_sc0003088.1_g000004 Rmu_sc0003092.1_g000018 Rmu_sc0003135.1_g000002 Rmu_sc0003160.1_g000018 Rmu_sc0003207.1_g000025 Rmu_sc0003211.1_g000012 Rmu_sc0003226.1_g000038 Rmu_sc0003270.1_g000024 Rmu_sc0003313.1_g000015 Rmu_sc0003413.1_g000019 Rmu_sc0003494.1_g000007 Rmu_sc0003501.1_g000001 Rmu_sc0003522.1_g000030 Rmu_sc0003541.1_g000045 Rmu_sc0003605.1_g000034 Rmu_sc0003610.1_g000010 Rmu_sc0003628.1_g000020 Rmu_sc0003688.1_g000002 Rmu_sc0003705.1_g000003 Rmu_sc0003708.1_g000040 Rmu_sc0003720.1_g000043 Rmu_sc0003733.1_g000007 Rmu_sc0003733.1_g000015 Rmu_sc0003813.1_g000001 Rmu_sc0003822.1_g000011 Rmu_sc0003825.1_g000001 Rmu_sc0003829.1_g000009 Rmu_sc0003829.1_g000034 Rmu_sc0003840.1_g000013 Rmu_sc0003852.1_g000015 Rmu_sc0003859.1_g000037 Rmu_sc0003882.1_g000031 Rmu_sc0003882.1_g000041 Rmu_sc0003920.1_g000017 Rmu_sc0004016.1_g000021 Rmu_sc0004038.1_g000005 Rmu_sc0004120.1_g000010 Rmu_sc0004168.1_g000036 Rmu_sc0004235.1_g000016 Rmu_sc0004236.1_g000008 Rmu_sc0004242.1_g000003 Rmu_sc0004254.1_g000001 Rmu_sc0004298.1_g000012 Rmu_sc0004298.1_g000013 Rmu_sc0004304.1_g000015 Rmu_sc0004339.1_g000027 Rmu_sc0004340.1_g000017 Rmu_sc0004462.1_g000003 Rmu_sc0004467.1_g000051 Rmu_sc0004484.1_g000021 Rmu_sc0004485.1_g000018 Rmu_sc0004572.1_g000019 Rmu_sc0004574.1_g000049 Rmu_sc0004591.1_g000005 Rmu_sc0004606.1_g000003 Rmu_sc0004608.1_g000005 Rmu_sc0004617.1_g000011 Rmu_sc0004657.1_g000084 Rmu_sc0004684.1_g000008 Rmu_sc0004700.1_g000017 Rmu_sc0004798.1_g000007 Rmu_sc0004811.1_g000017 Rmu_sc0004832.1_g000012 Rmu_sc0004832.1_g000030 Rmu_sc0004894.1_g000011 Rmu_sc0004948.1_g000016 Rmu_sc0004988.1_g000006 Rmu_sc0004995.1_g000001 Rmu_sc0005034.1_g000012 Rmu_sc0005050.1_g000007 Rmu_sc0005105.1_g000001 Rmu_sc0005114.1_g000008 Rmu_sc0005130.1_g000003 Rmu_sc0005277.1_g000003 Rmu_sc0005277.1_g000013 Rmu_sc0005290.1_g000007 Rmu_sc0005308.1_g000015 Rmu_sc0005331.1_g000012 Rmu_sc0005347.1_g000002 Rmu_sc0005392.1_g000013 Rmu_sc0005413.1_g000001 Rmu_sc0005431.1_g000029 Rmu_sc0005507.1_g000014 Rmu_sc0005539.1_g000027 Rmu_sc0005569.1_g000008 Rmu_sc0005580.1_g000003 Rmu_sc0005660.1_g000012 Rmu_sc0005664.1_g000035 Rmu_sc0005810.1_g000014 Rmu_sc0005813.1_g000002 Rmu_sc0005856.1_g000006 Rmu_sc0005856.1_g000007 Rmu_sc0005879.1_g000026 Rmu_sc0006003.1_g000009 Rmu_sc0006006.1_g000005 Rmu_sc0006133.1_g000010 Rmu_sc0006133.1_g000015 Rmu_sc0006215.1_g000016 Rmu_sc0006234.1_g000023 Rmu_sc0006244.1_g000014 Rmu_sc0006269.1_g000019 Rmu_sc0006725.1_g000015 Rmu_sc0006728.1_g000006 Rmu_sc0006736.1_g000003 Rmu_sc0006792.1_g000035 Rmu_sc0006888.1_g000041 Rmu_sc0006888.1_g000076 Rmu_sc0006953.1_g000001 Rmu_sc0007077.1_g000003 Rmu_sc0007124.1_g000003 Rmu_sc0007149.1_g000003 Rmu_sc0007286.1_g000016 Rmu_sc0007292.1_g000005 Rmu_sc0007362.1_g000008 Rmu_sc0007367.1_g000006 Rmu_sc0007418.1_g000022 Rmu_sc0007613.1_g000005 Rmu_sc0007674.1_g000001 Rmu_sc0007683.1_g000014 Rmu_sc0007696.1_g000002 Rmu_sc0007886.1_g000004 Rmu_sc0007904.1_g000011 Rmu_sc0007904.1_g000046 Rmu_sc0007996.1_g000004 Rmu_sc0008019.1_g000023 Rmu_sc0008059.1_g000001 Rmu_sc0008086.1_g000001 Rmu_sc0008171.1_g000002 Rmu_sc0008171.1_g000022 Rmu_sc0008177.1_g000019 Rmu_sc0008199.1_g000006 Rmu_sc0008289.1_g000004 Rmu_sc0008487.1_g000006 Rmu_sc0008625.1_g000001 Rmu_sc0008651.1_g000003 Rmu_sc0008651.1_g000004 Rmu_sc0008828.1_g000006 Rmu_sc0008851.1_g000017 Rmu_sc0008974.1_g000003 Rmu_sc0009087.1_g000022 Rmu_sc0009238.1_g000002 Rmu_sc0009431.1_g000010 Rmu_sc0009483.1_g000005 Rmu_sc0009594.1_g000002 Rmu_sc0009687.1_g000009 Rmu_sc0009762.1_g000001 Rmu_sc0009841.1_g000001 Rmu_sc0009895.1_g000014 Rmu_sc0009983.1_g000001 Rmu_sc0010143.1_g000001 Rmu_sc0010152.1_g000002 Rmu_sc0010188.1_g000009 Rmu_sc0010224.1_g000005 Rmu_sc0010389.1_g000014 Rmu_sc0010617.1_g000008 Rmu_sc0010665.1_g000007 Rmu_sc0010665.1_g000019 Rmu_sc0010665.1_g000020 Rmu_sc0010859.1_g000001 Rmu_sc0010914.1_g000008 Rmu_sc0010972.1_g000008 Rmu_sc0011157.1_g000005 Rmu_sc0011203.1_g000013 Rmu_sc0011219.1_g000001 Rmu_sc0011368.1_g000001 Rmu_sc0011549.1_g000011 Rmu_sc0011601.1_g000009 Rmu_sc0011793.1_g000001 Rmu_sc0011845.1_g000001 Rmu_sc0011856.1_g000002 Rmu_sc0012155.1_g000002 Rmu_sc0012180.1_g000020 Rmu_sc0012283.1_g000017 Rmu_sc0012445.1_g000013 Rmu_sc0012539.1_g000001 Rmu_sc0012550.1_g000001 Rmu_sc0012670.1_g000013 Rmu_sc0012760.1_g000001 Rmu_sc0012766.1_g000001 Rmu_sc0012895.1_g000002 Rmu_sc0012905.1_g000001 Rmu_sc0013046.1_g000006 Rmu_sc0013047.1_g000008 Rmu_sc0013057.1_g000001 Rmu_sc0013365.1_g000009 Rmu_sc0013409.1_g000010 Rmu_sc0013552.1_g000018 Rmu_sc0013768.1_g000015 Rmu_sc0013833.1_g000001 Rmu_sc0013951.1_g000003 Rmu_sc0014051.1_g000001 Rmu_sc0014095.1_g000002 Rmu_sc0014095.1_g000003 Rmu_sc0014097.1_g000012 Rmu_sc0014185.1_g000001 Rmu_sc0014348.1_g000002 Rmu_sc0014431.1_g000005 Rmu_sc0014818.1_g000001 Rmu_sc0015084.1_g000003 Rmu_sc0015313.1_g000002 Rmu_sc0015331.1_g000003 Rmu_sc0015713.1_g000011 Rmu_sc0015743.1_g000006 Rmu_sc0015860.1_g000001 Rmu_sc0015899.1_g000002 Rmu_sc0015900.1_g000007 Rmu_sc0015969.1_g000007 Rmu_sc0015976.1_g000004 Rmu_sc0016164.1_g000007 Rmu_sc0016164.1_g000013 Rmu_sc0016360.1_g000002 Rmu_sc0016435.1_g000004 Rmu_sc0017009.1_g000002 Rmu_sc0017148.1_g000001 Rmu_sc0017753.1_g000002 Rmu_sc0017987.1_g000002 Rmu_sc0018437.1_g000001 Rmu_sc0018669.1_g000001 Rmu_sc0018670.1_g000001 Rmu_sc0018786.1_g000001 Rmu_sc0019312.1_g000002 Rmu_sc0019346.1_g000002 Rmu_sc0019623.1_g000001 Rmu_sc0019674.1_g000003 Rmu_sc0019789.1_g000001 Rmu_sc0019790.1_g000006 Rmu_sc0019915.1_g000002 Rmu_sc0021128.1_g000001 Rmu_sc0021231.1_g000001 Rmu_sc0021430.1_g000001 Rmu_sc0021556.1_g000003 Rmu_sc0021646.1_g000001 Rmu_sc0022273.1_g000001 Rmu_sc0022381.1_g000001 Rmu_sc0022484.1_g000001 Rmu_sc0022521.1_g000001 Rmu_sc0022755.1_g000008 Rmu_sc0023272.1_g000002 Rmu_sc0023659.1_g000001 Rmu_sc0023672.1_g000002 Rmu_sc0023844.1_g000001 Rmu_sc0023975.1_g000001 Rmu_sc0024263.1_g000001 Rmu_sc0024406.1_g000003 Rmu_sc0024479.1_g000001 Rmu_sc0024816.1_g000005 Rmu_sc0025106.1_g000007 Rmu_sc0025197.1_g000001 Rmu_sc0025746.1_g000003 Rmu_sc0026938.1_g000001 Rmu_sc0027296.1_g000001 Rmu_sc0027714.1_g000001 Rmu_sc0028516.1_g000001 Rmu_sc0028993.1_g000001 Rmu_sc0029166.1_g000001 Rmu_sc0029330.1_g000003 Rmu_sc0029345.1_g000004 Rmu_sc0030376.1_g000001 Rmu_sc0031326.1_g000004 Rmu_sc0031386.1_g000001 Rmu_sc0031500.1_g000001 Rmu_sc0031844.1_g000001 Rmu_sc0032071.1_g000001 Rmu_sc0032810.1_g000001 Rmu_sc0032856.1_g000001 Rmu_sc0033986.1_g000002 Rmu_sc0034195.1_g000002 Rmu_sc0035210.1_g000001 Rmu_sc0037058.1_g000001 Rmu_sc0037570.1_g000001 Rmu_sc0038133.1_g000001 Rmu_sc0038486.1_g000001 Rmu_sc0039111.1_g000001 Rmu_sc0040406.1_g000006 Rmu_sc0040952.1_g000001 Rmu_sc0041906.1_g000002 Rmu_sc0042135.1_g000001 Rmu_sc0042136.1_g000001 Rmu_ssc0000014.1_g000006 Rmu_ssc0000022.1_g000054 Rmu_ssc0000067.1_g000010 Rmu_ssc0000067.1_g000016 Rmu_ssc0000098.1_g000005 Rmu_ssc0000120.1_g000017 Rmu_ssc0000127.1_g000030 Rmu_ssc0000127.1_g000037 Rmu_ssc0000127.1_g000064 Rmu_ssc0000136.1_g000012 Rmu_ssc0000146.1_g000001 Rmu_ssc0000167.1_g000031 Rmu_ssc0000184.1_g000007 Rmu_ssc0000213.1_g000072 Rmu_ssc0000243.1_g000017 Rmu_ssc0000256.1_g000013 Rmu_ssc0000287.1_g000022 Rmu_ssc0000330.1_g000033 Rmu_ssc0000330.1_g000034 Rmu_ssc0000396.1_g000015 Rmu_ssc0000400.1_g000049 Rmu_ssc0000432.1_g000049 Rmu_ssc0000434.1_g000049 Rmu_ssc0000467.1_g000030 Rmu_ssc0000470.1_g000026
rosa_roxburghii Rroxscaffold_153G00436770 Rroxscaffold_1G00018260 Rroxscaffold_1G00026590 Rroxscaffold_1G00031230 Rroxscaffold_1G00034060 Rroxscaffold_1G00037040 Rroxscaffold_1G00076080 Rroxscaffold_2G00084660 Rroxscaffold_2G00107300 Rroxscaffold_2G00110910 Rroxscaffold_2G00126380 Rroxscaffold_2G00126390 Rroxscaffold_2G00131770 Rroxscaffold_3G00242050 Rroxscaffold_3G00242060 Rroxscaffold_3G00245310 Rroxscaffold_4G00285880 Rroxscaffold_4G00300410 Rroxscaffold_4G00311430 Rroxscaffold_4G00311440 Rroxscaffold_4G00321850 Rroxscaffold_4G00321860 Rroxscaffold_4G00321870 Rroxscaffold_4G00329390 Rroxscaffold_5G00333680 Rroxscaffold_5G00343170 Rroxscaffold_5G00346820 Rroxscaffold_5G00348970 Rroxscaffold_5G00365270 Rroxscaffold_5G00382940 Rroxscaffold_6G00425450 Rroxscaffold_6G00425480 Rroxscaffold_7G00167810 Rroxscaffold_7G00168150 Rroxscaffold_7G00182390 Rroxscaffold_7G00184550 Rroxscaffold_7G00199290 Rroxscaffold_7G00214200 Rroxscaffold_7G00217930
rosa_samantha Rh3BG303800
rosa_wichuraiana Rw4G019340

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 228
AciI CCGC 6 cut(s) 74, 189, 228, 384, 397, 439
AclWI GGATC 1 cut(s) 255
AcsI RAATTY 1 cut(s) 343
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 244, 402
AgsI TTSAA 2 cut(s) 68, 97
AlwI GGATC 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 442
AoxI GGCC 2 cut(s) 257, 361
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 343
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 3 cut(s) 81, 257, 361
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 56, 263
AvaI CYCGRG 1 cut(s) 442
AvaII GGWCC 1 cut(s) 81
BauI CACGAG 1 cut(s) 121
BbvI GCAGC 1 cut(s) 127
BcnI CCSGG 1 cut(s) 245
BfaI CTAG 1 cut(s) 460
BglI GCCNNNNNGGC 1 cut(s) 432
BisI GCNGC 2 cut(s) 141, 229
BlsI GCNGC 2 cut(s) 142, 230
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 442
BmgT120I GGNCC 3 cut(s) 81, 257, 361
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 430
BpuEI CTTGAG 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 402
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 3 cut(s) 57, 158, 234
BseLI CCNNNNNNNGG 2 cut(s) 244, 402
BseXI GCAGC 1 cut(s) 127
BseYI CCCAGC 1 cut(s) 162
BshFI GGCC 2 cut(s) 259, 363
BsiHKCI CYCGRG 1 cut(s) 442
BsiSI CCGG 3 cut(s) 38, 244, 381
BslI CCNNNNNNNGG 2 cut(s) 244, 402
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 2 cut(s) 259, 363
BsoBI CYCGRG 1 cut(s) 442
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 6 cut(s) 74, 189, 228, 384, 397, 439
BspANI GGCC 2 cut(s) 259, 363
BspHI TCATGA 1 cut(s) 312
BspPI GGATC 1 cut(s) 255
BsrBI CCGCTC 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 121
Bst4CI ACNGT 2 cut(s) 44, 218
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 74, 226, 454
BstF5I GGATG 3 cut(s) 57, 158, 234
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 432, 453
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 2 cut(s) 259, 363
BtgZI GCGATG 1 cut(s) 407
BtsCI GGATG 3 cut(s) 57, 158, 234
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 3 cut(s) 74, 226, 454
CciI TCATGA 1 cut(s) 312
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 3 cut(s) 81, 257, 361
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 391
CviAII CATG 4 cut(s) 308, 313, 332, 371
CviJI RGCY 6 cut(s) 140, 166, 259, 363, 435, 447
CviKI_1 RGCY 6 cut(s) 140, 166, 259, 363, 435, 447
CviQI GTAC 1 cut(s) 391
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
DraIII CACNNNGTG 1 cut(s) 220
EciI GGCGGA 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 442
EcoRI GAATTC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 4 cut(s) 311, 316, 335, 374
FaiI YATR 8 cut(s) 288, 303, 309, 314, 329, 333, 356, 372
FatI CATG 4 cut(s) 307, 312, 331, 370
FauI CCCGC 2 cut(s) 81, 404
Fnu4HI GCNGC 2 cut(s) 141, 229
FokI GGATG 3 cut(s) 64, 145, 221
Fsp4HI GCNGC 2 cut(s) 141, 229
FspBI CTAG 1 cut(s) 460
GlaI GCGC 1 cut(s) 102
GluI GCNGC 2 cut(s) 141, 229
GsaI CCCAGC 1 cut(s) 166
HaeIII GGCC 2 cut(s) 259, 363
HapII CCGG 3 cut(s) 38, 244, 381
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 311, 316, 335, 374
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HpaII CCGG 3 cut(s) 38, 244, 381
HphI GGTGA 2 cut(s) 56, 263
Hpy188III TCNNGA 1 cut(s) 313
HpyCH4III ACNGT 2 cut(s) 44, 218
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 432, 453
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 311, 316, 335, 374
HspAI GCGC 1 cut(s) 101
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 5 cut(s) 51, 129, 176, 257, 394
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 430
MaeI CTAG 1 cut(s) 460
MaeIII GTNAC 2 cut(s) 212, 407
MalI GATC 1 cut(s) 249
MbiI CCGCTC 1 cut(s) 228
MboI GATC 1 cut(s) 247
MflI RGATCY 1 cut(s) 247
MluCI AATT 2 cut(s) 277, 343
MseI TTAA 2 cut(s) 26, 201
MslI CAYNNNNRTG 2 cut(s) 291, 369
MspI CCGG 3 cut(s) 38, 244, 381
MspR9I CCNGG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 432, 453
NciI CCSGG 1 cut(s) 245
NdeII GATC 1 cut(s) 247
NlaIII CATG 4 cut(s) 311, 316, 335, 374
NmuCI GTSAC 2 cut(s) 212, 407
NspI RCATGY 1 cut(s) 335
PagI TCATGA 1 cut(s) 312
PctI GAATGC 1 cut(s) 74
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 2 cut(s) 142, 230
PsiI TTATAA 1 cut(s) 356
PspFI CCCAGC 1 cut(s) 162
PspPI GGNCC 3 cut(s) 81, 257, 361
PsuI RGATCY 1 cut(s) 247
PsyI GACNNNGTC 1 cut(s) 308
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 2 cut(s) 291, 369
SaqAI TTAA 2 cut(s) 26, 201
SatI GCNGC 2 cut(s) 141, 229
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 3 cut(s) 81, 257, 361
ScrFI CCNGG 1 cut(s) 245
SetI ASST 6 cut(s) 83, 178, 276, 324, 380, 414
SfaNI GCATC 1 cut(s) 430
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 2 cut(s) 291, 369
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 2 cut(s) 277, 343
SsiI CCGC 6 cut(s) 74, 189, 228, 384, 397, 439
SspMI CTAG 1 cut(s) 460
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 2 cut(s) 44, 218
TaqI TCGA 1 cut(s) 172
TasI AATT 2 cut(s) 277, 343
TauI GCSGC 1 cut(s) 231
Tru1I TTAA 2 cut(s) 26, 201
Tru9I TTAA 2 cut(s) 26, 201
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 2 cut(s) 212, 407
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 2 cut(s) 212, 407
TspDTI ATGAA 2 cut(s) 118, 336
TspRI CASTG 1 cut(s) 221
Tth111I GACNNNGTC 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 1 cut(s) 343
XceI RCATGY 1 cut(s) 335
XspI CTAG 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.