Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 556 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 787 |
| AccBSI | CCGCTC | 1 cut(s) | 862 |
| AccI | GTMKAC | 1 cut(s) | 535 |
| AccII | CGCG | 3 cut(s) | 114, 251, 267 |
| AclI | AACGTT | 1 cut(s) | 1052 |
| AclWI | GGATC | 6 cut(s) | 179, 205, 378, 704, 814, 959 |
| AcoI | YGGCCR | 2 cut(s) | 285, 483 |
| AcyI | GRCGYC | 3 cut(s) | 128, 837, 1023 |
| AfaI | GTAC | 3 cut(s) | 353, 573, 585 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 24, 194, 254, 545, 696, 787 |
| AflIII | ACRYGT | 1 cut(s) | 452 |
| AgsI | TTSAA | 3 cut(s) | 36, 100, 991 |
| AjnI | CCWGG | 6 cut(s) | 292, 310, 524, 559, 598, 689 |
| AleI | CACNNNNGTG | 1 cut(s) | 554 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 949, 981 |
| AluBI | AGCT | 2 cut(s) | 681, 784 |
| AluI | AGCT | 2 cut(s) | 681, 784 |
| Alw26I | GTCTC | 2 cut(s) | 122, 824 |
| AlwI | GGATC | 6 cut(s) | 179, 205, 378, 704, 814, 959 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 566 |
| AoxI | GGCC | 8 cut(s) | 285, 331, 417, 483, 563, 731, 753, 880 |
| ApeKI | GCWGC | 4 cut(s) | 315, 318, 440, 893 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 663 |
| AspA2I | CCTAGG | 1 cut(s) | 722 |
| AspLEI | GCGC | 6 cut(s) | 114, 269, 408, 445, 545, 729 |
| AspS9I | GGNCC | 3 cut(s) | 563, 617, 881 |
| AsuC2I | CCSGG | 6 cut(s) | 109, 284, 497, 739, 824, 879 |
| AsuHPI | GGTGA | 3 cut(s) | 311, 337, 991 |
| AvaII | GGWCC | 1 cut(s) | 617 |
| AvrII | CCTAGG | 1 cut(s) | 722 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 163, 196 |
| BanI | GGYRCC | 1 cut(s) | 556 |
| BbsI | GAAGAC | 1 cut(s) | 107 |
| BbvI | GCAGC | 4 cut(s) | 327, 330, 427, 880 |
| BccI | CCATC | 2 cut(s) | 430, 742 |
| BceAI | ACGGC | 2 cut(s) | 967, 1075 |
| BciT130I | CCWGG | 6 cut(s) | 294, 312, 526, 561, 600, 691 |
| BcnI | CCSGG | 6 cut(s) | 109, 284, 497, 739, 824, 879 |
| BcoDI | GTCTC | 2 cut(s) | 122, 824 |
| BfaI | CTAG | 1 cut(s) | 723 |
| BfmI | CTRYAG | 1 cut(s) | 902 |
| BfoI | RGCGCY | 1 cut(s) | 546 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 330, 739 |
| BglII | AGATCT | 1 cut(s) | 337 |
| BisI | GCNGC | 7 cut(s) | 316, 319, 322, 441, 483, 765, 894 |
| BlnI | CCTAGG | 1 cut(s) | 722 |
| BlsI | GCNGC | 7 cut(s) | 317, 320, 323, 442, 484, 766, 895 |
| Bme18I | GGWCC | 1 cut(s) | 617 |
| BmgT120I | GGNCC | 3 cut(s) | 563, 617, 881 |
| BmiI | GGNNCC | 3 cut(s) | 558, 618, 883 |
| BmsI | GCATC | 4 cut(s) | 96, 412, 676, 786 |
| BoxI | GACNNNNGTC | 1 cut(s) | 836 |
| BpiI | GAAGAC | 1 cut(s) | 107 |
| BpmI | CTGGAG | 1 cut(s) | 827 |
| BpuMI | CCSGG | 6 cut(s) | 109, 284, 497, 739, 824, 879 |
| Bsa29I | ATCGAT | 1 cut(s) | 183 |
| BsaHI | GRCGYC | 3 cut(s) | 128, 837, 1023 |
| BsaI | GGTCTC | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 6 cut(s) | 282, 292, 560, 599, 690, 722 |
| BsaWI | WCCGGW | 1 cut(s) | 194 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 800, 830 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 24, 194, 254, 545, 696, 787 |
| Bse118I | RCCGGY | 1 cut(s) | 545 |
| Bse1I | ACTGG | 3 cut(s) | 369, 810, 1079 |
| Bse3DI | GCAATG | 1 cut(s) | 1074 |
| BseBI | CCWGG | 6 cut(s) | 294, 312, 526, 561, 600, 691 |
| BseCI | ATCGAT | 1 cut(s) | 183 |
| BseDI | CCNNGG | 6 cut(s) | 282, 292, 560, 599, 690, 722 |
| BseGI | GGATG | 3 cut(s) | 691, 734, 801 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 24, 194, 254, 545, 696, 787 |
| BseMI | GCAATG | 1 cut(s) | 1074 |
| BseMII | CTCAG | 1 cut(s) | 693 |
| BseNI | ACTGG | 3 cut(s) | 369, 810, 1079 |
| BseRI | GAGGAG | 1 cut(s) | 7 |
| BseXI | GCAGC | 4 cut(s) | 327, 330, 427, 880 |
| BseYI | CCCAGC | 3 cut(s) | 539, 780, 841 |
| Bsh1236I | CGCG | 3 cut(s) | 114, 251, 267 |
| Bsh1285I | CGRYCG | 1 cut(s) | 255 |
| BshFI | GGCC | 8 cut(s) | 287, 333, 419, 485, 565, 733, 755, 882 |
| BshNI | GGYRCC | 1 cut(s) | 556 |
| BshVI | ATCGAT | 1 cut(s) | 183 |
| BsiEI | CGRYCG | 1 cut(s) | 255 |
| BsiSI | CCGG | 8 cut(s) | 109, 195, 284, 497, 546, 739, 823, 879 |
| BslFI | GGGAC | 2 cut(s) | 630, 824 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 24, 194, 254, 545, 696, 787 |
| BsmAI | GTCTC | 2 cut(s) | 122, 824 |
| BsmBI | CGTCTC | 1 cut(s) | 824 |
| BsmFI | GGGAC | 2 cut(s) | 630, 824 |
| BsnI | GGCC | 8 cut(s) | 287, 333, 419, 485, 565, 733, 755, 882 |
| Bso31I | GGTCTC | 1 cut(s) | 122 |
| Bsp143I | GATC | 8 cut(s) | 184, 197, 252, 337, 370, 709, 819, 964 |
| BspANI | GGCC | 8 cut(s) | 287, 333, 419, 485, 565, 733, 755, 882 |
| BspCNI | CTCAG | 1 cut(s) | 694 |
| BspDI | ATCGAT | 1 cut(s) | 183 |
| BspFNI | CGCG | 3 cut(s) | 114, 251, 267 |
| BspHI | TCATGA | 1 cut(s) | 447 |
| BspLI | GGNNCC | 3 cut(s) | 558, 618, 883 |
| BspMAI | CTGCAG | 1 cut(s) | 906 |
| BspPI | GGATC | 6 cut(s) | 179, 205, 378, 704, 814, 959 |
| BspQI | GCTCTTC | 1 cut(s) | 869 |
| BspT107I | GGYRCC | 1 cut(s) | 556 |
| BspTNI | GGTCTC | 1 cut(s) | 122 |
| BsrBI | CCGCTC | 1 cut(s) | 862 |
| BsrDI | GCAATG | 1 cut(s) | 1074 |
| BsrFI | RCCGGY | 1 cut(s) | 545 |
| BsrI | ACTGG | 3 cut(s) | 369, 810, 1079 |
| BssAI | RCCGGY | 1 cut(s) | 545 |
| BssECI | CCNNGG | 6 cut(s) | 282, 292, 560, 599, 690, 722 |
| BssMI | GATC | 8 cut(s) | 184, 197, 252, 337, 370, 709, 819, 964 |
| BssNI | GRCGYC | 3 cut(s) | 128, 837, 1023 |
| BssT1I | CCWWGG | 1 cut(s) | 722 |
| Bst2UI | CCWGG | 6 cut(s) | 294, 312, 526, 561, 600, 691 |
| Bst4CI | ACNGT | 1 cut(s) | 50 |
| Bst6I | CTCTTC | 1 cut(s) | 869 |
| BstACI | GRCGYC | 3 cut(s) | 128, 837, 1023 |
| BstC8I | GCNNGC | 4 cut(s) | 509, 547, 731, 906 |
| BstDEI | CTNAG | 3 cut(s) | 82, 210, 702 |
| BstEII | GGTNACC | 1 cut(s) | 997 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 22 |
| BstF5I | GGATG | 3 cut(s) | 691, 734, 801 |
| BstFNI | CGCG | 3 cut(s) | 114, 251, 267 |
| BstH2I | RGCGCY | 1 cut(s) | 546 |
| BstHHI | GCGC | 6 cut(s) | 114, 269, 408, 445, 545, 729 |
| BstKTI | GATC | 8 cut(s) | 187, 200, 255, 340, 373, 712, 822, 967 |
| BstMAI | GTCTC | 2 cut(s) | 122, 824 |
| BstMBI | GATC | 8 cut(s) | 184, 197, 252, 337, 370, 709, 819, 964 |
| BstMCI | CGRYCG | 1 cut(s) | 255 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 264, 321, 330, 586, 739, 761 |
| BstNI | CCWGG | 6 cut(s) | 294, 312, 526, 561, 600, 691 |
| BstNSI | RCATGY | 2 cut(s) | 584, 746 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 836 |
| BstPI | GGTNACC | 1 cut(s) | 997 |
| BstSFI | CTRYAG | 1 cut(s) | 902 |
| BstUI | CGCG | 3 cut(s) | 114, 251, 267 |
| BstV1I | GCAGC | 4 cut(s) | 327, 330, 427, 880 |
| BstV2I | GAAGAC | 1 cut(s) | 107 |
| BstX2I | RGATCY | 2 cut(s) | 337, 370 |
| BstYI | RGATCY | 2 cut(s) | 337, 370 |
| Bsu15I | ATCGAT | 1 cut(s) | 183 |
| BsuRI | GGCC | 8 cut(s) | 287, 333, 419, 485, 565, 733, 755, 882 |
| BsuTUI | ATCGAT | 1 cut(s) | 183 |
| BtsCI | GGATG | 3 cut(s) | 691, 734, 801 |
| BtsIMutI | CAGTG | 2 cut(s) | 362, 486 |
| Cac8I | GCNNGC | 4 cut(s) | 509, 547, 731, 906 |
| CaiI | CAGNNNCTG | 1 cut(s) | 566 |
| CciI | TCATGA | 1 cut(s) | 447 |
| CfoI | GCGC | 6 cut(s) | 114, 269, 408, 445, 545, 729 |
| Cfr10I | RCCGGY | 1 cut(s) | 545 |
| Cfr13I | GGNCC | 3 cut(s) | 563, 617, 881 |
| ClaI | ATCGAT | 1 cut(s) | 183 |
| CseI | GACGC | 4 cut(s) | 136, 826, 834, 1031 |
| Csp6I | GTAC | 3 cut(s) | 352, 572, 584 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 585, 620 |
| CviAII | CATG | 5 cut(s) | 349, 448, 581, 743, 979 |
| CviQI | GTAC | 3 cut(s) | 352, 572, 584 |
| DdeI | CTNAG | 3 cut(s) | 82, 210, 702 |
| DpnI | GATC | 8 cut(s) | 186, 199, 254, 339, 372, 711, 821, 966 |
| DpnII | GATC | 8 cut(s) | 184, 197, 252, 337, 370, 709, 819, 964 |
| EaeI | YGGCCR | 2 cut(s) | 285, 483 |
| Eam1104I | CTCTTC | 1 cut(s) | 869 |
| EarI | CTCTTC | 1 cut(s) | 869 |
| EciI | GGCGGA | 7 cut(s) | 177, 383, 416, 671, 702, 751, 842 |
| Eco130I | CCWWGG | 1 cut(s) | 722 |
| Eco31I | GGTCTC | 1 cut(s) | 122 |
| Eco47I | GGWCC | 1 cut(s) | 617 |
| Eco91I | GGTNACC | 1 cut(s) | 997 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 22 |
| EcoO109I | RGGNCCY | 1 cut(s) | 563 |
| EcoO65I | GGTNACC | 1 cut(s) | 997 |
| EcoRII | CCWGG | 6 cut(s) | 292, 310, 524, 559, 598, 689 |
| EcoT14I | CCWWGG | 1 cut(s) | 722 |
| EcoT22I | ATGCAT | 1 cut(s) | 582 |
| ErhI | CCWWGG | 1 cut(s) | 722 |
| Esp3I | CGTCTC | 1 cut(s) | 824 |
| FaeI | CATG | 5 cut(s) | 352, 451, 584, 746, 982 |
| FaqI | GGGAC | 2 cut(s) | 630, 824 |
| FatI | CATG | 5 cut(s) | 348, 447, 580, 742, 978 |
| FauI | CCCGC | 2 cut(s) | 232, 256 |
| FauNDI | CATATG | 1 cut(s) | 922 |
| FblI | GTMKAC | 1 cut(s) | 535 |
| Fnu4HI | GCNGC | 7 cut(s) | 316, 319, 322, 441, 483, 765, 894 |
| FokI | GGATG | 3 cut(s) | 698, 721, 808 |
| Fsp4HI | GCNGC | 7 cut(s) | 316, 319, 322, 441, 483, 765, 894 |
| FspBI | CTAG | 1 cut(s) | 723 |
| GlaI | GCGC | 6 cut(s) | 113, 268, 407, 444, 544, 728 |
| GluI | GCNGC | 7 cut(s) | 316, 319, 322, 441, 483, 765, 894 |
| GsaI | CCCAGC | 3 cut(s) | 543, 784, 845 |
| GsuI | CTGGAG | 1 cut(s) | 827 |
| HaeII | RGCGCY | 1 cut(s) | 546 |
| HaeIII | GGCC | 8 cut(s) | 287, 333, 419, 485, 565, 733, 755, 882 |
| HapII | CCGG | 8 cut(s) | 109, 195, 284, 497, 546, 739, 823, 879 |
| HgaI | GACGC | 4 cut(s) | 136, 826, 834, 1031 |
| HhaI | GCGC | 6 cut(s) | 114, 269, 408, 445, 545, 729 |
| Hin1I | GRCGYC | 3 cut(s) | 128, 837, 1023 |
| Hin1II | CATG | 5 cut(s) | 352, 451, 584, 746, 982 |
| Hin6I | GCGC | 6 cut(s) | 112, 267, 406, 443, 543, 727 |
| HinP1I | GCGC | 6 cut(s) | 112, 267, 406, 443, 543, 727 |
| HincII | GTYRAC | 5 cut(s) | 61, 207, 262, 536, 849 |
| HindII | GTYRAC | 5 cut(s) | 61, 207, 262, 536, 849 |
| HinfI | GANTC | 5 cut(s) | 160, 475, 659, 758, 856 |
| HpaI | GTTAAC | 2 cut(s) | 207, 262 |
| HpaII | CCGG | 8 cut(s) | 109, 195, 284, 497, 546, 739, 823, 879 |
| HphI | GGTGA | 3 cut(s) | 311, 337, 991 |
| Hpy166II | GTNNAC | 6 cut(s) | 61, 207, 262, 536, 849, 976 |
| Hpy188I | TCNGA | 6 cut(s) | 92, 244, 685, 855, 914, 964 |
| Hpy188III | TCNNGA | 4 cut(s) | 448, 609, 873, 991 |
| Hpy8I | GTNNAC | 6 cut(s) | 61, 207, 262, 536, 849, 976 |
| Hpy99I | CGWCG | 2 cut(s) | 1022, 1025 |
| HpyAV | CCTTC | 2 cut(s) | 988, 997 |
| HpyCH4III | ACNGT | 1 cut(s) | 50 |
| HpyCH4IV | ACGT | 3 cut(s) | 454, 959, 1052 |
| HpyCH4V | TGCA | 4 cut(s) | 580, 799, 896, 904 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 264, 321, 330, 586, 739, 761 |
| HpyF3I | CTNAG | 3 cut(s) | 82, 210, 702 |
| HpySE526I | ACGT | 3 cut(s) | 454, 959, 1052 |
| Hsp92I | GRCGYC | 3 cut(s) | 128, 837, 1023 |
| Hsp92II | CATG | 5 cut(s) | 352, 451, 584, 746, 982 |
| HspAI | GCGC | 6 cut(s) | 112, 267, 406, 443, 543, 727 |
| KroI | GCCGGC | 1 cut(s) | 545 |
| KroNI | GCCGGC | 1 cut(s) | 547 |
| KspAI | GTTAAC | 2 cut(s) | 207, 262 |
| Kzo9I | GATC | 8 cut(s) | 184, 197, 252, 337, 370, 709, 819, 964 |
| LguI | GCTCTTC | 1 cut(s) | 869 |
| LmnI | GCTCC | 2 cut(s) | 403, 808 |
| Lsp1109I | GCAGC | 4 cut(s) | 327, 330, 427, 880 |
| LweI | GCATC | 4 cut(s) | 96, 412, 676, 786 |
| MaeI | CTAG | 1 cut(s) | 723 |
| MaeII | ACGT | 3 cut(s) | 454, 959, 1052 |
| MaeIII | GTNAC | 8 cut(s) | 50, 124, 152, 161, 343, 513, 772, 997 |
| MalI | GATC | 8 cut(s) | 186, 199, 254, 339, 372, 711, 821, 966 |
| MbiI | CCGCTC | 1 cut(s) | 862 |
| MboI | GATC | 8 cut(s) | 184, 197, 252, 337, 370, 709, 819, 964 |
| MboII | GAAGA | 3 cut(s) | 112, 365, 856 |
| MflI | RGATCY | 2 cut(s) | 337, 370 |
| MluCI | AATT | 1 cut(s) | 897 |
| MlyI | GAGTC | 2 cut(s) | 169, 469 |
| MmeI | TCCRAC | 2 cut(s) | 267, 1035 |
| Mph1103I | ATGCAT | 1 cut(s) | 582 |
| MroNI | GCCGGC | 1 cut(s) | 545 |
| MroXI | GAANNNNTTC | 1 cut(s) | 663 |
| MseI | TTAA | 3 cut(s) | 23, 206, 261 |
| MslI | CAYNNNNRTG | 1 cut(s) | 554 |
| MspA1I | CMGCKG | 2 cut(s) | 589, 893 |
| MspI | CCGG | 8 cut(s) | 109, 195, 284, 497, 546, 739, 823, 879 |
| MvaI | CCWGG | 6 cut(s) | 294, 312, 526, 561, 600, 691 |
| MvnI | CGCG | 3 cut(s) | 114, 251, 267 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 264, 321, 330, 586, 739, 761 |
| NaeI | GCCGGC | 1 cut(s) | 547 |
| NciI | CCSGG | 6 cut(s) | 109, 284, 497, 739, 824, 879 |
| NdeI | CATATG | 1 cut(s) | 922 |
| NdeII | GATC | 8 cut(s) | 184, 197, 252, 337, 370, 709, 819, 964 |
| NgoMIV | GCCGGC | 1 cut(s) | 545 |
| NlaIII | CATG | 5 cut(s) | 352, 451, 584, 746, 982 |
| NlaIV | GGNNCC | 3 cut(s) | 558, 618, 883 |
| NmuCI | GTSAC | 5 cut(s) | 124, 161, 343, 513, 997 |
| NsiI | ATGCAT | 1 cut(s) | 582 |
| NspI | RCATGY | 2 cut(s) | 584, 746 |
| OliI | CACNNNNGTG | 1 cut(s) | 554 |
| PagI | TCATGA | 1 cut(s) | 447 |
| PciSI | GCTCTTC | 1 cut(s) | 869 |
| PdiI | GCCGGC | 1 cut(s) | 547 |
| PdmI | GAANNNNTTC | 1 cut(s) | 663 |
| PfeI | GAWTC | 3 cut(s) | 659, 758, 856 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 787 |
| PkrI | GCNGC | 7 cut(s) | 317, 320, 323, 442, 484, 766, 895 |
| Ple19I | CGATCG | 1 cut(s) | 255 |
| PleI | GAGTC | 2 cut(s) | 168, 469 |
| PpsI | GAGTC | 2 cut(s) | 168, 469 |
| PshAI | GACNNNNGTC | 1 cut(s) | 836 |
| Psp1406I | AACGTT | 1 cut(s) | 1052 |
| Psp6I | CCWGG | 6 cut(s) | 292, 310, 524, 559, 598, 689 |
| PspEI | GGTNACC | 1 cut(s) | 997 |
| PspFI | CCCAGC | 3 cut(s) | 539, 780, 841 |
| PspGI | CCWGG | 6 cut(s) | 292, 310, 524, 559, 598, 689 |
| PspN4I | GGNNCC | 3 cut(s) | 558, 618, 883 |
| PspPI | GGNCC | 3 cut(s) | 563, 617, 881 |
| PstI | CTGCAG | 1 cut(s) | 906 |
| PstNI | CAGNNNCTG | 1 cut(s) | 566 |
| PsuI | RGATCY | 2 cut(s) | 337, 370 |
| PvuI | CGATCG | 1 cut(s) | 255 |
| RsaI | GTAC | 3 cut(s) | 353, 573, 585 |
| RsaNI | GTAC | 3 cut(s) | 352, 572, 584 |
| RseI | CAYNNNNRTG | 1 cut(s) | 554 |
| SalI | GTCGAC | 1 cut(s) | 534 |
| SapI | GCTCTTC | 1 cut(s) | 869 |
| SaqAI | TTAA | 3 cut(s) | 23, 206, 261 |
| SatI | GCNGC | 7 cut(s) | 316, 319, 322, 441, 483, 765, 894 |
| Sau3AI | GATC | 8 cut(s) | 184, 197, 252, 337, 370, 709, 819, 964 |
| Sau96I | GGNCC | 3 cut(s) | 563, 617, 881 |
| SchI | GAGTC | 2 cut(s) | 169, 469 |
| SfaNI | GCATC | 4 cut(s) | 96, 412, 676, 786 |
| SfcI | CTRYAG | 1 cut(s) | 902 |
| SinI | GGWCC | 1 cut(s) | 617 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 554 |
| Sse9I | AATT | 1 cut(s) | 897 |
| SspMI | CTAG | 1 cut(s) | 723 |
| StyI | CCWWGG | 1 cut(s) | 722 |
| TaaI | ACNGT | 1 cut(s) | 50 |
| TaiI | ACGT | 3 cut(s) | 457, 962, 1055 |
| TaqI | TCGA | 3 cut(s) | 183, 535, 1017 |
| TaqII | GACCGA | 1 cut(s) | 931 |
| TasI | AATT | 1 cut(s) | 897 |
| TauI | GCSGC | 3 cut(s) | 324, 485, 767 |
| TfiI | GAWTC | 3 cut(s) | 659, 758, 856 |
| Tru1I | TTAA | 3 cut(s) | 23, 206, 261 |
| Tru9I | TTAA | 3 cut(s) | 23, 206, 261 |
| TscAI | CASTG | 2 cut(s) | 369, 493 |
| TseFI | GTSAC | 5 cut(s) | 124, 161, 343, 513, 997 |
| TseI | GCWGC | 4 cut(s) | 315, 318, 440, 893 |
| Tsp45I | GTSAC | 5 cut(s) | 124, 161, 343, 513, 997 |
| TspDTI | ATGAA | 2 cut(s) | 365, 1085 |
| TspRI | CASTG | 2 cut(s) | 369, 493 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 787 |
| VpaK11BI | GGWCC | 1 cut(s) | 617 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 22 |
| XceI | RCATGY | 2 cut(s) | 584, 746 |
| XmaJI | CCTAGG | 1 cut(s) | 722 |
| XmiI | GTMKAC | 1 cut(s) | 535 |
| XmnI | GAANNNNTTC | 1 cut(s) | 663 |
| XspI | CTAG | 1 cut(s) | 723 |
| Zsp2I | ATGCAT | 1 cut(s) | 582 |