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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 379 |
| AccB1I | GGYRCC | 2 cut(s) | 365, 379 |
| AccBSI | CCGCTC | 1 cut(s) | 504 |
| AccII | CGCG | 1 cut(s) | 90 |
| AclWI | GGATC | 1 cut(s) | 168 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| AcuI | CTGAAG | 2 cut(s) | 48, 311 |
| AfaI | GTAC | 1 cut(s) | 381 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 77, 151, 368, 508 |
| AjnI | CCWGG | 3 cut(s) | 115, 156, 347 |
| AluBI | AGCT | 2 cut(s) | 308, 460 |
| AluI | AGCT | 2 cut(s) | 308, 460 |
| Alw21I | GWGCWC | 1 cut(s) | 524 |
| AlwI | GGATC | 1 cut(s) | 168 |
| AoxI | GGCC | 3 cut(s) | 108, 154, 359 |
| ApeKI | GCWGC | 2 cut(s) | 138, 141 |
| Asp718I | GGTACC | 1 cut(s) | 379 |
| AspLEI | GCGC | 4 cut(s) | 92, 231, 325, 544 |
| AspS9I | GGNCC | 3 cut(s) | 154, 360, 440 |
| AsuC2I | CCSGG | 3 cut(s) | 107, 153, 363 |
| AsuHPI | GGTGA | 1 cut(s) | 160 |
| AvaII | GGWCC | 1 cut(s) | 440 |
| AxyI | CCTNAGG | 1 cut(s) | 243 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 363, 396 |
| BanI | GGYRCC | 2 cut(s) | 365, 379 |
| Bbv12I | GWGCWC | 1 cut(s) | 524 |
| BbvI | GCAGC | 2 cut(s) | 150, 153 |
| BccI | CCATC | 3 cut(s) | 59, 430, 458 |
| BciT130I | CCWGG | 3 cut(s) | 117, 158, 349 |
| BcnI | CCSGG | 3 cut(s) | 107, 153, 363 |
| BfaI | CTAG | 4 cut(s) | 182, 269, 302, 513 |
| BfmI | CTRYAG | 1 cut(s) | 525 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 153 |
| BisI | GCNGC | 4 cut(s) | 139, 142, 145, 491 |
| BlsI | GCNGC | 4 cut(s) | 140, 143, 146, 492 |
| Bme1390I | CCNGG | 6 cut(s) | 107, 117, 153, 158, 349, 363 |
| Bme18I | GGWCC | 1 cut(s) | 440 |
| BmgT120I | GGNCC | 3 cut(s) | 154, 360, 440 |
| BmiI | GGNNCC | 4 cut(s) | 367, 381, 387, 441 |
| BmrFI | CCNGG | 6 cut(s) | 107, 117, 153, 158, 349, 363 |
| BpuMI | CCSGG | 3 cut(s) | 107, 153, 363 |
| BsaAI | YACGTR | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 2 cut(s) | 105, 115 |
| BsaWI | WCCGGW | 1 cut(s) | 382 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 77, 151, 368, 508 |
| Bse118I | RCCGGY | 1 cut(s) | 368 |
| Bse1I | ACTGG | 2 cut(s) | 192, 389 |
| Bse21I | CCTNAGG | 1 cut(s) | 243 |
| BseBI | CCWGG | 3 cut(s) | 117, 158, 349 |
| BseDI | CCNNGG | 2 cut(s) | 105, 115 |
| BseGI | GGATG | 3 cut(s) | 51, 441, 450 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 77, 151, 368, 508 |
| BseMII | CTCAG | 2 cut(s) | 234, 414 |
| BseNI | ACTGG | 2 cut(s) | 192, 389 |
| BseRI | GAGGAG | 2 cut(s) | 236, 239 |
| BseXI | GCAGC | 2 cut(s) | 150, 153 |
| BseYI | CCCAGC | 2 cut(s) | 70, 456 |
| BsgI | GTGCAG | 1 cut(s) | 422 |
| Bsh1236I | CGCG | 1 cut(s) | 90 |
| BshFI | GGCC | 3 cut(s) | 110, 156, 361 |
| BshNI | GGYRCC | 2 cut(s) | 365, 379 |
| BsiHKAI | GWGCWC | 1 cut(s) | 524 |
| BsiSI | CCGG | 5 cut(s) | 107, 152, 363, 369, 383 |
| BslFI | GGGAC | 1 cut(s) | 453 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 77, 151, 368, 508 |
| BsmFI | GGGAC | 1 cut(s) | 453 |
| BsnI | GGCC | 3 cut(s) | 110, 156, 361 |
| Bsp1286I | GDGCHC | 1 cut(s) | 524 |
| Bsp143I | GATC | 2 cut(s) | 160, 193 |
| BspANI | GGCC | 3 cut(s) | 110, 156, 361 |
| BspCNI | CTCAG | 2 cut(s) | 235, 415 |
| BspFNI | CGCG | 1 cut(s) | 90 |
| BspLI | GGNNCC | 4 cut(s) | 367, 381, 387, 441 |
| BspMAI | CTGCAG | 1 cut(s) | 529 |
| BspPI | GGATC | 1 cut(s) | 168 |
| BspQI | GCTCTTC | 1 cut(s) | 24 |
| BspT107I | GGYRCC | 2 cut(s) | 365, 379 |
| BsrBI | CCGCTC | 1 cut(s) | 504 |
| BsrFI | RCCGGY | 1 cut(s) | 368 |
| BsrI | ACTGG | 2 cut(s) | 192, 389 |
| BssAI | RCCGGY | 1 cut(s) | 368 |
| BssECI | CCNNGG | 2 cut(s) | 105, 115 |
| BssMI | GATC | 2 cut(s) | 160, 193 |
| Bst2UI | CCWGG | 3 cut(s) | 117, 158, 349 |
| Bst4CI | ACNGT | 3 cut(s) | 11, 258, 336 |
| Bst6I | CTCTTC | 2 cut(s) | 24, 287 |
| BstBAI | YACGTR | 1 cut(s) | 341 |
| BstC8I | GCNNGC | 6 cut(s) | 36, 149, 520, 529, 540, 546 |
| BstDEI | CTNAG | 2 cut(s) | 243, 423 |
| BstF5I | GGATG | 3 cut(s) | 51, 441, 450 |
| BstFNI | CGCG | 1 cut(s) | 90 |
| BstHHI | GCGC | 4 cut(s) | 92, 231, 325, 544 |
| BstKTI | GATC | 2 cut(s) | 163, 196 |
| BstMBI | GATC | 2 cut(s) | 160, 193 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 87, 144, 153, 320, 358, 409, 524, 528 |
| BstNI | CCWGG | 3 cut(s) | 117, 158, 349 |
| BstSCI | CCNGG | 6 cut(s) | 105, 115, 151, 156, 347, 361 |
| BstSFI | CTRYAG | 1 cut(s) | 525 |
| BstUI | CGCG | 1 cut(s) | 90 |
| BstV1I | GCAGC | 2 cut(s) | 150, 153 |
| BstX2I | RGATCY | 1 cut(s) | 160 |
| BstYI | RGATCY | 1 cut(s) | 160 |
| Bsu36I | CCTNAGG | 1 cut(s) | 243 |
| BsuRI | GGCC | 3 cut(s) | 110, 156, 361 |
| BtgZI | GCGATG | 1 cut(s) | 393 |
| BtsCI | GGATG | 3 cut(s) | 51, 441, 450 |
| BtsI | GCAGTG | 2 cut(s) | 485, 522 |
| BtsIMutI | CAGTG | 3 cut(s) | 185, 485, 522 |
| Cac8I | GCNNGC | 6 cut(s) | 36, 149, 520, 529, 540, 546 |
| CfoI | GCGC | 4 cut(s) | 92, 231, 325, 544 |
| Cfr10I | RCCGGY | 1 cut(s) | 368 |
| Cfr13I | GGNCC | 3 cut(s) | 154, 360, 440 |
| CseI | GACGC | 2 cut(s) | 307, 425 |
| Csp6I | GTAC | 1 cut(s) | 380 |
| CviAII | CATG | 1 cut(s) | 172 |
| CviQI | GTAC | 1 cut(s) | 380 |
| DdeI | CTNAG | 2 cut(s) | 243, 423 |
| DpnI | GATC | 2 cut(s) | 162, 195 |
| DpnII | GATC | 2 cut(s) | 160, 193 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| Eam1104I | CTCTTC | 2 cut(s) | 24, 287 |
| EarI | CTCTTC | 2 cut(s) | 24, 287 |
| EciI | GGCGGA | 2 cut(s) | 37, 494 |
| Eco47I | GGWCC | 1 cut(s) | 440 |
| Eco57I | CTGAAG | 2 cut(s) | 48, 311 |
| Eco81I | CCTNAGG | 1 cut(s) | 243 |
| EcoRII | CCWGG | 3 cut(s) | 115, 156, 347 |
| FaeI | CATG | 1 cut(s) | 175 |
| FaiI | YATR | 6 cut(s) | 173, 177, 201, 395, 495, 555 |
| FaqI | GGGAC | 1 cut(s) | 453 |
| FatI | CATG | 1 cut(s) | 171 |
| FauI | CCCGC | 2 cut(s) | 8, 156 |
| Fnu4HI | GCNGC | 4 cut(s) | 139, 142, 145, 491 |
| FokI | GGATG | 3 cut(s) | 38, 437, 448 |
| Fsp4HI | GCNGC | 4 cut(s) | 139, 142, 145, 491 |
| FspBI | CTAG | 4 cut(s) | 182, 269, 302, 513 |
| GlaI | GCGC | 4 cut(s) | 91, 230, 324, 543 |
| GluI | GCNGC | 4 cut(s) | 139, 142, 145, 491 |
| GsaI | CCCAGC | 2 cut(s) | 74, 460 |
| HaeIII | GGCC | 3 cut(s) | 110, 156, 361 |
| HapII | CCGG | 5 cut(s) | 107, 152, 363, 369, 383 |
| HgaI | GACGC | 2 cut(s) | 307, 425 |
| HhaI | GCGC | 4 cut(s) | 92, 231, 325, 544 |
| Hin1II | CATG | 1 cut(s) | 175 |
| Hin6I | GCGC | 4 cut(s) | 90, 229, 323, 542 |
| HinP1I | GCGC | 4 cut(s) | 90, 229, 323, 542 |
| HincII | GTYRAC | 1 cut(s) | 85 |
| HindII | GTYRAC | 1 cut(s) | 85 |
| HinfI | GANTC | 1 cut(s) | 482 |
| HpaI | GTTAAC | 1 cut(s) | 85 |
| HpaII | CCGG | 5 cut(s) | 107, 152, 363, 369, 383 |
| HphI | GGTGA | 1 cut(s) | 160 |
| Hpy166II | GTNNAC | 1 cut(s) | 85 |
| Hpy188I | TCNGA | 2 cut(s) | 67, 508 |
| Hpy8I | GTNNAC | 1 cut(s) | 85 |
| HpyCH4III | ACNGT | 3 cut(s) | 11, 258, 336 |
| HpyCH4IV | ACGT | 3 cut(s) | 217, 277, 340 |
| HpyCH4V | TGCA | 2 cut(s) | 403, 527 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 87, 144, 153, 320, 358, 409, 524, 528 |
| HpyF3I | CTNAG | 2 cut(s) | 243, 423 |
| HpySE526I | ACGT | 3 cut(s) | 217, 277, 340 |
| Hsp92II | CATG | 1 cut(s) | 175 |
| HspAI | GCGC | 4 cut(s) | 90, 229, 323, 542 |
| KpnI | GGTACC | 1 cut(s) | 383 |
| KspAI | GTTAAC | 1 cut(s) | 85 |
| Kzo9I | GATC | 2 cut(s) | 160, 193 |
| LguI | GCTCTTC | 1 cut(s) | 24 |
| LmnI | GCTCC | 3 cut(s) | 226, 385, 469 |
| Lsp1109I | GCAGC | 2 cut(s) | 150, 153 |
| MaeI | CTAG | 4 cut(s) | 182, 269, 302, 513 |
| MaeII | ACGT | 3 cut(s) | 217, 277, 340 |
| MaeIII | GTNAC | 3 cut(s) | 166, 273, 336 |
| MalI | GATC | 2 cut(s) | 162, 195 |
| MbiI | CCGCTC | 1 cut(s) | 504 |
| MboI | GATC | 2 cut(s) | 160, 193 |
| MboII | GAAGA | 3 cut(s) | 41, 188, 304 |
| MflI | RGATCY | 1 cut(s) | 160 |
| MhlI | GDGCHC | 1 cut(s) | 524 |
| MmeI | TCCRAC | 2 cut(s) | 90, 447 |
| MnlI | CCTC | 8 cut(s) | 73, 118, 214, 217, 238, 288, 469, 502 |
| MseI | TTAA | 1 cut(s) | 84 |
| MslI | CAYNNNNRTG | 1 cut(s) | 398 |
| MspA1I | CMGCKG | 1 cut(s) | 548 |
| MspI | CCGG | 5 cut(s) | 107, 152, 363, 369, 383 |
| MspR9I | CCNGG | 6 cut(s) | 107, 117, 153, 158, 349, 363 |
| MvaI | CCWGG | 3 cut(s) | 117, 158, 349 |
| MvnI | CGCG | 1 cut(s) | 90 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 87, 144, 153, 320, 358, 409, 524, 528 |
| NciI | CCSGG | 3 cut(s) | 107, 153, 363 |
| NdeII | GATC | 2 cut(s) | 160, 193 |
| NlaIII | CATG | 1 cut(s) | 175 |
| NlaIV | GGNNCC | 4 cut(s) | 367, 381, 387, 441 |
| NmuCI | GTSAC | 3 cut(s) | 166, 273, 336 |
| PciSI | GCTCTTC | 1 cut(s) | 24 |
| PfeI | GAWTC | 1 cut(s) | 482 |
| PkrI | GCNGC | 4 cut(s) | 140, 143, 146, 492 |
| Ppu21I | YACGTR | 1 cut(s) | 341 |
| Psp6I | CCWGG | 3 cut(s) | 115, 156, 347 |
| PspFI | CCCAGC | 2 cut(s) | 70, 456 |
| PspGI | CCWGG | 3 cut(s) | 115, 156, 347 |
| PspN4I | GGNNCC | 4 cut(s) | 367, 381, 387, 441 |
| PspPI | GGNCC | 3 cut(s) | 154, 360, 440 |
| PstI | CTGCAG | 1 cut(s) | 529 |
| PsuI | RGATCY | 1 cut(s) | 160 |
| RsaI | GTAC | 1 cut(s) | 381 |
| RsaNI | GTAC | 1 cut(s) | 380 |
| RseI | CAYNNNNRTG | 1 cut(s) | 398 |
| SapI | GCTCTTC | 1 cut(s) | 24 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| SatI | GCNGC | 4 cut(s) | 139, 142, 145, 491 |
| Sau3AI | GATC | 2 cut(s) | 160, 193 |
| Sau96I | GGNCC | 3 cut(s) | 154, 360, 440 |
| ScrFI | CCNGG | 6 cut(s) | 107, 117, 153, 158, 349, 363 |
| SduI | GDGCHC | 1 cut(s) | 524 |
| SetI | ASST | 7 cut(s) | 220, 280, 310, 343, 402, 424, 462 |
| SfcI | CTRYAG | 1 cut(s) | 525 |
| SinI | GGWCC | 1 cut(s) | 440 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 398 |
| SspMI | CTAG | 4 cut(s) | 182, 269, 302, 513 |
| StyD4I | CCNGG | 6 cut(s) | 105, 115, 151, 156, 347, 361 |
| TaaI | ACNGT | 3 cut(s) | 11, 258, 336 |
| TaiI | ACGT | 3 cut(s) | 220, 280, 343 |
| TauI | GCSGC | 2 cut(s) | 147, 493 |
| TfiI | GAWTC | 1 cut(s) | 482 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TscAI | CASTG | 3 cut(s) | 192, 492, 529 |
| TseFI | GTSAC | 3 cut(s) | 166, 273, 336 |
| TseI | GCWGC | 2 cut(s) | 138, 141 |
| Tsp45I | GTSAC | 3 cut(s) | 166, 273, 336 |
| TspDTI | ATGAA | 3 cut(s) | 188, 192, 300 |
| TspRI | CASTG | 3 cut(s) | 192, 492, 529 |
| VpaK11BI | GGWCC | 1 cut(s) | 440 |
| XspI | CTAG | 4 cut(s) | 182, 269, 302, 513 |