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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 379, 406 |
| AccB1I | GGYRCC | 2 cut(s) | 379, 406 |
| AccBSI | CCGCTC | 1 cut(s) | 504 |
| AccI | GTMKAC | 1 cut(s) | 358 |
| AccII | CGCG | 1 cut(s) | 74 |
| AclWI | GGATC | 1 cut(s) | 201 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| AcuI | CTGAAG | 3 cut(s) | 48, 264, 546 |
| AfaI | GTAC | 4 cut(s) | 176, 381, 396, 408 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 77, 256, 368, 508 |
| AflIII | ACRYGT | 1 cut(s) | 275 |
| AjnI | CCWGG | 2 cut(s) | 347, 382 |
| AluBI | AGCT | 1 cut(s) | 181 |
| AluI | AGCT | 1 cut(s) | 181 |
| Alw21I | GWGCWC | 1 cut(s) | 94 |
| AlwI | GGATC | 1 cut(s) | 201 |
| AoxI | GGCC | 5 cut(s) | 108, 154, 306, 386, 554 |
| Asp718I | GGTACC | 2 cut(s) | 379, 406 |
| AspLEI | GCGC | 2 cut(s) | 231, 544 |
| AspS9I | GGNCC | 2 cut(s) | 386, 440 |
| AsuC2I | CCSGG | 1 cut(s) | 117 |
| AsuNHI | GCTAGC | 1 cut(s) | 181 |
| AvaII | GGWCC | 1 cut(s) | 440 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 363, 390, 396, 423 |
| BanI | GGYRCC | 2 cut(s) | 379, 406 |
| BbsI | GAAGAC | 1 cut(s) | 302 |
| Bbv12I | GWGCWC | 1 cut(s) | 94 |
| BccI | CCATC | 2 cut(s) | 59, 157 |
| BceAI | ACGGC | 2 cut(s) | 541, 578 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 581 |
| BciT130I | CCWGG | 2 cut(s) | 349, 384 |
| BcnI | CCSGG | 1 cut(s) | 117 |
| BfaI | CTAG | 3 cut(s) | 182, 513, 604 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 153, 562 |
| BglII | AGATCT | 1 cut(s) | 160 |
| BisI | GCNGC | 2 cut(s) | 121, 145 |
| BlsI | GCNGC | 2 cut(s) | 122, 146 |
| Bme1390I | CCNGG | 3 cut(s) | 117, 349, 384 |
| Bme18I | GGWCC | 1 cut(s) | 440 |
| BmgT120I | GGNCC | 2 cut(s) | 386, 440 |
| BmiI | GGNNCC | 3 cut(s) | 381, 408, 441 |
| BmrFI | CCNGG | 3 cut(s) | 117, 349, 384 |
| BmsI | GCATC | 1 cut(s) | 583 |
| BmtI | GCTAGC | 1 cut(s) | 185 |
| BpiI | GAAGAC | 1 cut(s) | 302 |
| BpmI | CTGGAG | 1 cut(s) | 323 |
| Bpu10I | CCTNAGC | 1 cut(s) | 551 |
| BpuMI | CCSGG | 1 cut(s) | 117 |
| BsaAI | YACGTR | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 5 cut(s) | 72, 105, 115, 383, 545 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 77, 256, 368, 508 |
| Bse118I | RCCGGY | 3 cut(s) | 368, 388, 587 |
| Bse1I | ACTGG | 1 cut(s) | 192 |
| BseBI | CCWGG | 2 cut(s) | 349, 384 |
| BseDI | CCNNGG | 5 cut(s) | 72, 105, 115, 383, 545 |
| BseGI | GGATG | 1 cut(s) | 51 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 77, 256, 368, 508 |
| BseMII | CTCAG | 3 cut(s) | 414, 416, 565 |
| BseNI | ACTGG | 1 cut(s) | 192 |
| BseRI | GAGGAG | 2 cut(s) | 236, 239 |
| BseYI | CCCAGC | 2 cut(s) | 319, 362 |
| Bsh1236I | CGCG | 1 cut(s) | 74 |
| Bsh1285I | CGRYCG | 1 cut(s) | 393 |
| BshFI | GGCC | 5 cut(s) | 110, 156, 308, 388, 556 |
| BshNI | GGYRCC | 2 cut(s) | 379, 406 |
| BsiEI | CGRYCG | 1 cut(s) | 393 |
| BsiHKAI | GWGCWC | 1 cut(s) | 94 |
| BsiSI | CCGG | 4 cut(s) | 117, 369, 389, 588 |
| BslFI | GGGAC | 1 cut(s) | 453 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 77, 256, 368, 508 |
| BsmFI | GGGAC | 1 cut(s) | 453 |
| BsnI | GGCC | 5 cut(s) | 110, 156, 308, 388, 556 |
| Bsp1286I | GDGCHC | 1 cut(s) | 94 |
| Bsp143I | GATC | 2 cut(s) | 160, 193 |
| BspANI | GGCC | 5 cut(s) | 110, 156, 308, 388, 556 |
| BspCNI | CTCAG | 3 cut(s) | 415, 415, 564 |
| BspFNI | CGCG | 1 cut(s) | 74 |
| BspHI | TCATGA | 1 cut(s) | 270 |
| BspLI | GGNNCC | 3 cut(s) | 381, 408, 441 |
| BspOI | GCTAGC | 1 cut(s) | 185 |
| BspPI | GGATC | 1 cut(s) | 201 |
| BspT107I | GGYRCC | 2 cut(s) | 379, 406 |
| BsrBI | CCGCTC | 1 cut(s) | 504 |
| BsrFI | RCCGGY | 3 cut(s) | 368, 388, 587 |
| BsrI | ACTGG | 1 cut(s) | 192 |
| BssAI | RCCGGY | 3 cut(s) | 368, 388, 587 |
| BssECI | CCNNGG | 5 cut(s) | 72, 105, 115, 383, 545 |
| BssMI | GATC | 2 cut(s) | 160, 193 |
| Bst2UI | CCWGG | 2 cut(s) | 349, 384 |
| Bst4CI | ACNGT | 1 cut(s) | 11 |
| BstBAI | YACGTR | 1 cut(s) | 341 |
| BstC8I | GCNNGC | 6 cut(s) | 48, 183, 316, 332, 540, 589 |
| BstDEI | CTNAG | 3 cut(s) | 402, 423, 551 |
| BstDSI | CCRYGG | 1 cut(s) | 72 |
| BstF5I | GGATG | 1 cut(s) | 51 |
| BstFNI | CGCG | 1 cut(s) | 74 |
| BstHHI | GCGC | 2 cut(s) | 231, 544 |
| BstKTI | GATC | 2 cut(s) | 163, 196 |
| BstMBI | GATC | 2 cut(s) | 160, 193 |
| BstMCI | CGRYCG | 1 cut(s) | 393 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 144, 153, 320, 562, 584, 593 |
| BstNI | CCWGG | 2 cut(s) | 349, 384 |
| BstSCI | CCNGG | 3 cut(s) | 115, 347, 382 |
| BstUI | CGCG | 1 cut(s) | 74 |
| BstV2I | GAAGAC | 1 cut(s) | 302 |
| BstX2I | RGATCY | 2 cut(s) | 160, 193 |
| BstYI | RGATCY | 2 cut(s) | 160, 193 |
| BsuRI | GGCC | 5 cut(s) | 110, 156, 308, 388, 556 |
| BtgI | CCRYGG | 1 cut(s) | 72 |
| BtsCI | GGATG | 1 cut(s) | 51 |
| BtsI | GCAGTG | 1 cut(s) | 597 |
| BtsIMutI | CAGTG | 2 cut(s) | 185, 597 |
| Cac8I | GCNNGC | 6 cut(s) | 48, 183, 316, 332, 540, 589 |
| CciI | TCATGA | 1 cut(s) | 270 |
| CfoI | GCGC | 2 cut(s) | 231, 544 |
| Cfr10I | RCCGGY | 3 cut(s) | 368, 388, 587 |
| Cfr13I | GGNCC | 2 cut(s) | 386, 440 |
| Cfr42I | CCGCGG | 1 cut(s) | 75 |
| CseI | GACGC | 1 cut(s) | 307 |
| Csp6I | GTAC | 4 cut(s) | 175, 380, 395, 407 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 408, 443 |
| CviAII | CATG | 1 cut(s) | 271 |
| CviQI | GTAC | 4 cut(s) | 175, 380, 395, 407 |
| DdeI | CTNAG | 3 cut(s) | 402, 423, 551 |
| DpnI | GATC | 2 cut(s) | 162, 195 |
| DpnII | GATC | 2 cut(s) | 160, 193 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| EciI | GGCGGA | 3 cut(s) | 206, 525, 574 |
| Eco47I | GGWCC | 1 cut(s) | 440 |
| Eco57I | CTGAAG | 3 cut(s) | 48, 264, 546 |
| EcoRII | CCWGG | 2 cut(s) | 347, 382 |
| FaeI | CATG | 1 cut(s) | 274 |
| FaiI | YATR | 4 cut(s) | 173, 201, 272, 452 |
| FaqI | GGGAC | 1 cut(s) | 453 |
| FatI | CATG | 1 cut(s) | 270 |
| FauI | CCCGC | 6 cut(s) | 8, 55, 79, 323, 498, 558 |
| FblI | GTMKAC | 1 cut(s) | 358 |
| Fnu4HI | GCNGC | 2 cut(s) | 121, 145 |
| FokI | GGATG | 1 cut(s) | 38 |
| Fsp4HI | GCNGC | 2 cut(s) | 121, 145 |
| FspBI | CTAG | 3 cut(s) | 182, 513, 604 |
| GlaI | GCGC | 2 cut(s) | 230, 543 |
| GluI | GCNGC | 2 cut(s) | 121, 145 |
| GsaI | CCCAGC | 2 cut(s) | 323, 366 |
| GsuI | CTGGAG | 1 cut(s) | 323 |
| HaeIII | GGCC | 5 cut(s) | 110, 156, 308, 388, 556 |
| HapII | CCGG | 4 cut(s) | 117, 369, 389, 588 |
| HgaI | GACGC | 1 cut(s) | 307 |
| HhaI | GCGC | 2 cut(s) | 231, 544 |
| Hin1II | CATG | 1 cut(s) | 274 |
| Hin6I | GCGC | 2 cut(s) | 229, 542 |
| HinP1I | GCGC | 2 cut(s) | 229, 542 |
| HincII | GTYRAC | 2 cut(s) | 85, 359 |
| HindII | GTYRAC | 2 cut(s) | 85, 359 |
| HinfI | GANTC | 3 cut(s) | 400, 482, 581 |
| HpaI | GTTAAC | 1 cut(s) | 85 |
| HpaII | CCGG | 4 cut(s) | 117, 369, 389, 588 |
| Hpy166II | GTNNAC | 3 cut(s) | 85, 208, 359 |
| Hpy188I | TCNGA | 2 cut(s) | 67, 508 |
| Hpy188III | TCNNGA | 1 cut(s) | 271 |
| Hpy8I | GTNNAC | 3 cut(s) | 85, 208, 359 |
| HpyAV | CCTTC | 1 cut(s) | 521 |
| HpyCH4III | ACNGT | 1 cut(s) | 11 |
| HpyCH4IV | ACGT | 3 cut(s) | 217, 277, 340 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 144, 153, 320, 562, 584, 593 |
| HpyF3I | CTNAG | 3 cut(s) | 402, 423, 551 |
| HpySE526I | ACGT | 3 cut(s) | 217, 277, 340 |
| Hsp92II | CATG | 1 cut(s) | 274 |
| HspAI | GCGC | 2 cut(s) | 229, 542 |
| KpnI | GGTACC | 2 cut(s) | 383, 410 |
| KroI | GCCGGC | 1 cut(s) | 587 |
| KroNI | GCCGGC | 1 cut(s) | 589 |
| KspAI | GTTAAC | 1 cut(s) | 85 |
| KspI | CCGCGG | 1 cut(s) | 75 |
| Kzo9I | GATC | 2 cut(s) | 160, 193 |
| LmnI | GCTCC | 1 cut(s) | 226 |
| LweI | GCATC | 1 cut(s) | 583 |
| MaeI | CTAG | 3 cut(s) | 182, 513, 604 |
| MaeII | ACGT | 3 cut(s) | 217, 277, 340 |
| MaeIII | GTNAC | 3 cut(s) | 166, 336, 558 |
| MalI | GATC | 2 cut(s) | 162, 195 |
| MbiI | CCGCTC | 1 cut(s) | 504 |
| MboI | GATC | 2 cut(s) | 160, 193 |
| MboII | GAAGA | 3 cut(s) | 41, 188, 307 |
| MflI | RGATCY | 2 cut(s) | 160, 193 |
| MhlI | GDGCHC | 1 cut(s) | 94 |
| MlyI | GAGTC | 1 cut(s) | 394 |
| MmeI | TCCRAC | 1 cut(s) | 90 |
| MreI | CGCCGGCG | 1 cut(s) | 587 |
| MroNI | GCCGGC | 1 cut(s) | 587 |
| MseI | TTAA | 1 cut(s) | 84 |
| MspA1I | CMGCKG | 1 cut(s) | 74 |
| MspI | CCGG | 4 cut(s) | 117, 369, 389, 588 |
| MspR9I | CCNGG | 3 cut(s) | 117, 349, 384 |
| MvaI | CCWGG | 2 cut(s) | 349, 384 |
| MvnI | CGCG | 1 cut(s) | 74 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 144, 153, 320, 562, 584, 593 |
| NaeI | GCCGGC | 1 cut(s) | 589 |
| NciI | CCSGG | 1 cut(s) | 117 |
| NdeII | GATC | 2 cut(s) | 160, 193 |
| NgoMIV | GCCGGC | 1 cut(s) | 587 |
| NheI | GCTAGC | 1 cut(s) | 181 |
| NlaIII | CATG | 1 cut(s) | 274 |
| NlaIV | GGNNCC | 3 cut(s) | 381, 408, 441 |
| NmeAIII | GCCGAG | 2 cut(s) | 86, 570 |
| NmuCI | GTSAC | 3 cut(s) | 166, 336, 558 |
| PagI | TCATGA | 1 cut(s) | 270 |
| PdiI | GCCGGC | 1 cut(s) | 589 |
| PfeI | GAWTC | 2 cut(s) | 482, 581 |
| PkrI | GCNGC | 2 cut(s) | 122, 146 |
| PleI | GAGTC | 1 cut(s) | 394 |
| PpsI | GAGTC | 1 cut(s) | 394 |
| Ppu21I | YACGTR | 1 cut(s) | 341 |
| Psp6I | CCWGG | 2 cut(s) | 347, 382 |
| PspFI | CCCAGC | 2 cut(s) | 319, 362 |
| PspGI | CCWGG | 2 cut(s) | 347, 382 |
| PspN4I | GGNNCC | 3 cut(s) | 381, 408, 441 |
| PspPI | GGNCC | 2 cut(s) | 386, 440 |
| PsuI | RGATCY | 2 cut(s) | 160, 193 |
| RsaI | GTAC | 4 cut(s) | 176, 381, 396, 408 |
| RsaNI | GTAC | 4 cut(s) | 175, 380, 395, 407 |
| SacII | CCGCGG | 1 cut(s) | 75 |
| SalI | GTCGAC | 1 cut(s) | 357 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| SatI | GCNGC | 2 cut(s) | 121, 145 |
| Sau3AI | GATC | 2 cut(s) | 160, 193 |
| Sau96I | GGNCC | 2 cut(s) | 386, 440 |
| SchI | GAGTC | 1 cut(s) | 394 |
| ScrFI | CCNGG | 3 cut(s) | 117, 349, 384 |
| SduI | GDGCHC | 1 cut(s) | 94 |
| SfaNI | GCATC | 1 cut(s) | 583 |
| Sfr303I | CCGCGG | 1 cut(s) | 75 |
| SgrAI | CRCCGGYG | 1 cut(s) | 587 |
| SgrBI | CCGCGG | 1 cut(s) | 75 |
| SinI | GGWCC | 1 cut(s) | 440 |
| SspMI | CTAG | 3 cut(s) | 182, 513, 604 |
| StyD4I | CCNGG | 3 cut(s) | 115, 347, 382 |
| TaaI | ACNGT | 1 cut(s) | 11 |
| TaiI | ACGT | 3 cut(s) | 220, 280, 343 |
| TaqI | TCGA | 1 cut(s) | 358 |
| TauI | GCSGC | 2 cut(s) | 123, 147 |
| TfiI | GAWTC | 2 cut(s) | 482, 581 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TscAI | CASTG | 2 cut(s) | 192, 604 |
| TseFI | GTSAC | 3 cut(s) | 166, 336, 558 |
| Tsp45I | GTSAC | 3 cut(s) | 166, 336, 558 |
| TspDTI | ATGAA | 1 cut(s) | 188 |
| TspRI | CASTG | 2 cut(s) | 192, 604 |
| VpaK11BI | GGWCC | 1 cut(s) | 440 |
| XmiI | GTMKAC | 1 cut(s) | 358 |
| XspI | CTAG | 3 cut(s) | 182, 513, 604 |