transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 234 - 323 | 2.2e-11 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1259 |
| AccBSI | CCGCTC | 1 cut(s) | 905 |
| AccI | GTMKAC | 1 cut(s) | 358 |
| AccII | CGCG | 5 cut(s) | 74, 90, 924, 1442, 1647 |
| AccIII | TCCGGA | 1 cut(s) | 1810 |
| AclI | AACGTT | 1 cut(s) | 713 |
| AcoI | YGGCCR | 4 cut(s) | 108, 306, 1201, 1450 |
| AcsI | RAATTY | 2 cut(s) | 1064, 1231 |
| AcuI | CTGAAG | 4 cut(s) | 48, 899, 940, 1723 |
| AcyI | GRCGYC | 1 cut(s) | 684 |
| AdeI | CACNNNGTG | 2 cut(s) | 693, 897 |
| AfaI | GTAC | 5 cut(s) | 176, 408, 1022, 1391, 1533 |
| AfeI | AGCGCT | 1 cut(s) | 1637 |
| AflIII | ACRYGT | 1 cut(s) | 275 |
| AgsI | TTSAA | 4 cut(s) | 508, 652, 746, 1528 |
| AjiI | CACGTC | 1 cut(s) | 1030 |
| AluBI | AGCT | 6 cut(s) | 43, 844, 1172, 1467, 1776, 1805 |
| AluI | AGCT | 6 cut(s) | 43, 844, 1172, 1467, 1776, 1805 |
| Alw21I | GWGCWC | 1 cut(s) | 45 |
| Alw26I | GTCTC | 4 cut(s) | 1076, 1487, 1623, 1808 |
| Aor13HI | TCCGGA | 1 cut(s) | 1810 |
| Aor51HI | AGCGCT | 1 cut(s) | 1637 |
| ApeKI | GCWGC | 8 cut(s) | 138, 141, 263, 342, 377, 908, 1192, 1467 |
| ApoI | RAATTY | 2 cut(s) | 1064, 1231 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 486, 884 |
| AspA2I | CCTAGG | 1 cut(s) | 545 |
| AspLEI | GCGC | 9 cut(s) | 92, 231, 268, 368, 382, 552, 1601, 1638, 1649 |
| AspS9I | GGNCC | 5 cut(s) | 386, 440, 977, 1318, 1573 |
| AsuC2I | CCSGG | 3 cut(s) | 107, 117, 320 |
| AsuHPI | GGTGA | 6 cut(s) | 134, 160, 542, 652, 1124, 1600 |
| AvaII | GGWCC | 3 cut(s) | 440, 977, 1318 |
| AvrII | CCTAGG | 1 cut(s) | 545 |
| BamHI | GGATCC | 1 cut(s) | 1718 |
| BanII | GRGCYC | 2 cut(s) | 45, 770 |
| Bbv12I | GWGCWC | 1 cut(s) | 45 |
| BbvCI | CCTCAGC | 1 cut(s) | 1159 |
| BbvI | GCAGC | 8 cut(s) | 150, 153, 250, 354, 389, 920, 1204, 1454 |
| BccI | CCATC | 4 cut(s) | 1014, 1129, 1586, 1595 |
| BceAI | ACGGC | 4 cut(s) | 554, 736, 1341, 1525 |
| BcnI | CCSGG | 3 cut(s) | 107, 117, 320 |
| BcoDI | GTCTC | 4 cut(s) | 1076, 1487, 1623, 1808 |
| BfaI | CTAG | 3 cut(s) | 546, 929, 1831 |
| BfoI | RGCGCY | 4 cut(s) | 369, 383, 1602, 1639 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 153, 562 |
| BlnI | CCTAGG | 1 cut(s) | 545 |
| BlpI | GCTNAGC | 1 cut(s) | 1801 |
| Bme18I | GGWCC | 3 cut(s) | 440, 977, 1318 |
| BmgBI | CACGTC | 1 cut(s) | 1030 |
| BmgT120I | GGNCC | 5 cut(s) | 386, 440, 977, 1318, 1573 |
| BmiI | GGNNCC | 3 cut(s) | 441, 978, 1720 |
| BmsI | GCATC | 3 cut(s) | 920, 953, 1587 |
| BpmI | CTGGAG | 1 cut(s) | 1765 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1159 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1801 |
| BpuEI | CTTGAG | 2 cut(s) | 956, 1745 |
| BpuMI | CCSGG | 3 cut(s) | 107, 117, 320 |
| Bsa29I | ATCGAT | 1 cut(s) | 1590 |
| BsaAI | YACGTR | 1 cut(s) | 406 |
| BsaHI | GRCGYC | 1 cut(s) | 684 |
| BsaI | GGTCTC | 1 cut(s) | 1076 |
| BsaJI | CCNNGG | 8 cut(s) | 105, 133, 383, 422, 545, 1056, 1409, 1569 |
| BsaWI | WCCGGW | 1 cut(s) | 1810 |
| Bse118I | RCCGGY | 2 cut(s) | 368, 388 |
| Bse1I | ACTGG | 4 cut(s) | 192, 740, 1423, 1547 |
| Bse3DI | GCAATG | 2 cut(s) | 735, 1477 |
| BseAI | TCCGGA | 1 cut(s) | 1810 |
| BseCI | ATCGAT | 1 cut(s) | 1590 |
| BseDI | CCNNGG | 8 cut(s) | 105, 133, 383, 422, 545, 1056, 1409, 1569 |
| BseGI | GGATG | 3 cut(s) | 807, 1006, 1674 |
| BseMI | GCAATG | 2 cut(s) | 735, 1477 |
| BseMII | CTCAG | 4 cut(s) | 516, 929, 1173, 1815 |
| BseNI | ACTGG | 4 cut(s) | 192, 740, 1423, 1547 |
| BseRI | GAGGAG | 3 cut(s) | 236, 239, 959 |
| BseXI | GCAGC | 8 cut(s) | 150, 153, 250, 354, 389, 920, 1204, 1454 |
| BseYI | CCCAGC | 2 cut(s) | 57, 362 |
| Bsh1236I | CGCG | 5 cut(s) | 74, 90, 924, 1442, 1647 |
| Bsh1285I | CGRYCG | 2 cut(s) | 78, 316 |
| BshVI | ATCGAT | 1 cut(s) | 1590 |
| BsiEI | CGRYCG | 2 cut(s) | 78, 316 |
| BsiHKAI | GWGCWC | 1 cut(s) | 45 |
| BsiSI | CCGG | 7 cut(s) | 107, 117, 320, 369, 389, 822, 1811 |
| BsiWI | CGTACG | 1 cut(s) | 1020 |
| BslFI | GGGAC | 5 cut(s) | 453, 978, 990, 1239, 1277 |
| BsmAI | GTCTC | 4 cut(s) | 1076, 1487, 1623, 1808 |
| BsmFI | GGGAC | 5 cut(s) | 453, 978, 990, 1239, 1277 |
| BsmI | GAATGC | 1 cut(s) | 752 |
| Bso31I | GGTCTC | 1 cut(s) | 1076 |
| Bsp1286I | GDGCHC | 2 cut(s) | 45, 770 |
| Bsp13I | TCCGGA | 1 cut(s) | 1810 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1801 |
| BspCNI | CTCAG | 4 cut(s) | 517, 928, 1172, 1814 |
| BspDI | ATCGAT | 1 cut(s) | 1590 |
| BspEI | TCCGGA | 1 cut(s) | 1810 |
| BspFNI | CGCG | 5 cut(s) | 74, 90, 924, 1442, 1647 |
| BspHI | TCATGA | 3 cut(s) | 270, 1032, 1788 |
| BspLI | GGNNCC | 3 cut(s) | 441, 978, 1720 |
| BspQI | GCTCTTC | 1 cut(s) | 24 |
| BspTNI | GGTCTC | 1 cut(s) | 1076 |
| BsrBI | CCGCTC | 1 cut(s) | 905 |
| BsrDI | GCAATG | 2 cut(s) | 735, 1477 |
| BsrFI | RCCGGY | 2 cut(s) | 368, 388 |
| BsrI | ACTGG | 4 cut(s) | 192, 740, 1423, 1547 |
| BssAI | RCCGGY | 2 cut(s) | 368, 388 |
| BssECI | CCNNGG | 8 cut(s) | 105, 133, 383, 422, 545, 1056, 1409, 1569 |
| BssNI | GRCGYC | 1 cut(s) | 684 |
| BssT1I | CCWWGG | 2 cut(s) | 545, 1569 |
| Bst4CI | ACNGT | 5 cut(s) | 503, 783, 981, 1318, 1505 |
| Bst6I | CTCTTC | 1 cut(s) | 24 |
| BstACI | GRCGYC | 1 cut(s) | 684 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1428 |
| BstBAI | YACGTR | 1 cut(s) | 406 |
| BstDEI | CTNAG | 4 cut(s) | 525, 915, 1159, 1801 |
| BstEII | GGTNACC | 1 cut(s) | 658 |
| BstF5I | GGATG | 3 cut(s) | 807, 1006, 1674 |
| BstFNI | CGCG | 5 cut(s) | 74, 90, 924, 1442, 1647 |
| BstH2I | RGCGCY | 4 cut(s) | 369, 383, 1602, 1639 |
| BstHHI | GCGC | 9 cut(s) | 92, 231, 268, 368, 382, 552, 1601, 1638, 1649 |
| BstMAI | GTCTC | 4 cut(s) | 1076, 1487, 1623, 1808 |
| BstMCI | CGRYCG | 2 cut(s) | 78, 316 |
| BstNSI | RCATGY | 2 cut(s) | 791, 1618 |
| BstPI | GGTNACC | 1 cut(s) | 658 |
| BstUI | CGCG | 5 cut(s) | 74, 90, 924, 1442, 1647 |
| BstV1I | GCAGC | 8 cut(s) | 150, 153, 250, 354, 389, 920, 1204, 1454 |
| BstX2I | RGATCY | 5 cut(s) | 160, 193, 1365, 1688, 1718 |
| BstYI | RGATCY | 5 cut(s) | 160, 193, 1365, 1688, 1718 |
| Bsu15I | ATCGAT | 1 cut(s) | 1590 |
| BsuTUI | ATCGAT | 1 cut(s) | 1590 |
| BtrI | CACGTC | 1 cut(s) | 1030 |
| BtsCI | GGATG | 3 cut(s) | 807, 1006, 1674 |
| BtsI | GCAGTG | 1 cut(s) | 1795 |
| BtsIMutI | CAGTG | 8 cut(s) | 185, 779, 875, 923, 1358, 1416, 1554, 1795 |
| CciI | TCATGA | 3 cut(s) | 270, 1032, 1788 |
| CfoI | GCGC | 9 cut(s) | 92, 231, 268, 368, 382, 552, 1601, 1638, 1649 |
| Cfr10I | RCCGGY | 2 cut(s) | 368, 388 |
| Cfr13I | GGNCC | 5 cut(s) | 386, 440, 977, 1318, 1573 |
| ClaI | ATCGAT | 1 cut(s) | 1590 |
| CseI | GACGC | 1 cut(s) | 692 |
| Csp6I | GTAC | 5 cut(s) | 175, 407, 1021, 1390, 1532 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 408, 443 |
| CviAII | CATG | 9 cut(s) | 172, 271, 640, 776, 788, 1033, 1259, 1615, 1789 |
| CviQI | GTAC | 5 cut(s) | 175, 407, 1021, 1390, 1532 |
| DdeI | CTNAG | 4 cut(s) | 525, 915, 1159, 1801 |
| DraIII | CACNNNGTG | 2 cut(s) | 693, 897 |
| EaeI | YGGCCR | 4 cut(s) | 108, 306, 1201, 1450 |
| Eam1104I | CTCTTC | 1 cut(s) | 24 |
| EarI | CTCTTC | 1 cut(s) | 24 |
| EciI | GGCGGA | 9 cut(s) | 53, 206, 494, 525, 630, 808, 878, 1076, 1681 |
| Ecl136II | GAGCTC | 1 cut(s) | 43 |
| Eco130I | CCWWGG | 2 cut(s) | 545, 1569 |
| Eco147I | AGGCCT | 1 cut(s) | 884 |
| Eco24I | GRGCYC | 2 cut(s) | 45, 770 |
| Eco31I | GGTCTC | 1 cut(s) | 1076 |
| Eco32I | GATATC | 1 cut(s) | 1342 |
| Eco47I | GGWCC | 3 cut(s) | 440, 977, 1318 |
| Eco47III | AGCGCT | 1 cut(s) | 1637 |
| Eco53kI | GAGCTC | 1 cut(s) | 43 |
| Eco57I | CTGAAG | 4 cut(s) | 48, 899, 940, 1723 |
| Eco91I | GGTNACC | 1 cut(s) | 658 |
| EcoICRI | GAGCTC | 1 cut(s) | 43 |
| EcoO65I | GGTNACC | 1 cut(s) | 658 |
| EcoRI | GAATTC | 1 cut(s) | 1064 |
| EcoRV | GATATC | 1 cut(s) | 1342 |
| EcoT14I | CCWWGG | 2 cut(s) | 545, 1569 |
| EcoT38I | GRGCYC | 2 cut(s) | 45, 770 |
| ErhI | CCWWGG | 2 cut(s) | 545, 1569 |
| FaeI | CATG | 9 cut(s) | 175, 274, 643, 779, 791, 1036, 1262, 1618, 1792 |
| FaqI | GGGAC | 5 cut(s) | 453, 978, 990, 1239, 1277 |
| FatI | CATG | 9 cut(s) | 171, 270, 639, 775, 787, 1032, 1258, 1614, 1788 |
| FauI | CCCGC | 5 cut(s) | 8, 55, 79, 759, 809 |
| FauNDI | CATATG | 3 cut(s) | 583, 610, 1075 |
| FblI | GTMKAC | 1 cut(s) | 358 |
| FokI | GGATG | 3 cut(s) | 794, 993, 1661 |
| FriOI | GRGCYC | 2 cut(s) | 45, 770 |
| FspBI | CTAG | 3 cut(s) | 546, 929, 1831 |
| GlaI | GCGC | 9 cut(s) | 91, 230, 267, 367, 381, 551, 1600, 1637, 1648 |
| GsaI | CCCAGC | 2 cut(s) | 61, 366 |
| GsuI | CTGGAG | 1 cut(s) | 1765 |
| HaeII | RGCGCY | 4 cut(s) | 369, 383, 1602, 1639 |
| HapII | CCGG | 7 cut(s) | 107, 117, 320, 369, 389, 822, 1811 |
| HgaI | GACGC | 1 cut(s) | 692 |
| HhaI | GCGC | 9 cut(s) | 92, 231, 268, 368, 382, 552, 1601, 1638, 1649 |
| Hin1I | GRCGYC | 1 cut(s) | 684 |
| Hin1II | CATG | 9 cut(s) | 175, 274, 643, 779, 791, 1036, 1262, 1618, 1792 |
| Hin6I | GCGC | 9 cut(s) | 90, 229, 266, 366, 380, 550, 1599, 1636, 1647 |
| HinP1I | GCGC | 9 cut(s) | 90, 229, 266, 366, 380, 550, 1599, 1636, 1647 |
| HincII | GTYRAC | 3 cut(s) | 85, 359, 1729 |
| HindII | GTYRAC | 3 cut(s) | 85, 359, 1729 |
| HinfI | GANTC | 5 cut(s) | 482, 675, 872, 966, 1289 |
| HpaI | GTTAAC | 1 cut(s) | 85 |
| HpaII | CCGG | 7 cut(s) | 107, 117, 320, 369, 389, 822, 1811 |
| HphI | GGTGA | 6 cut(s) | 134, 160, 542, 652, 1124, 1600 |
| Hpy166II | GTNNAC | 4 cut(s) | 85, 359, 637, 1729 |
| Hpy188I | TCNGA | 4 cut(s) | 67, 1129, 1365, 1711 |
| Hpy188III | TCNNGA | 9 cut(s) | 100, 271, 432, 652, 958, 1033, 1702, 1789, 1811 |
| Hpy8I | GTNNAC | 4 cut(s) | 85, 359, 637, 1729 |
| Hpy99I | CGWCG | 2 cut(s) | 683, 686 |
| HpyAV | CCTTC | 9 cut(s) | 232, 497, 649, 658, 874, 895, 955, 964, 1216 |
| HpyCH4III | ACNGT | 5 cut(s) | 503, 783, 981, 1318, 1505 |
| HpyCH4IV | ACGT | 7 cut(s) | 277, 405, 713, 1019, 1029, 1560, 1731 |
| HpyCH4V | TGCA | 9 cut(s) | 403, 587, 779, 1016, 1307, 1356, 1431, 1470, 1671 |
| HpyF3I | CTNAG | 4 cut(s) | 525, 915, 1159, 1801 |
| HpySE526I | ACGT | 7 cut(s) | 277, 405, 713, 1019, 1029, 1560, 1731 |
| Hsp92I | GRCGYC | 1 cut(s) | 684 |
| Hsp92II | CATG | 9 cut(s) | 175, 274, 643, 779, 791, 1036, 1262, 1618, 1792 |
| HspAI | GCGC | 9 cut(s) | 90, 229, 266, 366, 380, 550, 1599, 1636, 1647 |
| Kpn2I | TCCGGA | 1 cut(s) | 1810 |
| KroI | GCCGGC | 1 cut(s) | 368 |
| KroNI | GCCGGC | 1 cut(s) | 370 |
| KspAI | GTTAAC | 1 cut(s) | 85 |
| LguI | GCTCTTC | 1 cut(s) | 24 |
| LmnI | GCTCC | 6 cut(s) | 40, 48, 214, 226, 1519, 1606 |
| Lsp1109I | GCAGC | 8 cut(s) | 150, 153, 250, 354, 389, 920, 1204, 1454 |
| LweI | GCATC | 3 cut(s) | 920, 953, 1587 |
| MaeI | CTAG | 3 cut(s) | 546, 929, 1831 |
| MaeII | ACGT | 7 cut(s) | 277, 405, 713, 1019, 1029, 1560, 1731 |
| MaeIII | GTNAC | 5 cut(s) | 166, 336, 658, 889, 1505 |
| MbiI | CCGCTC | 1 cut(s) | 905 |
| MboII | GAAGA | 4 cut(s) | 41, 188, 1116, 1729 |
| MflI | RGATCY | 5 cut(s) | 160, 193, 1365, 1688, 1718 |
| MhlI | GDGCHC | 2 cut(s) | 45, 770 |
| MluCI | AATT | 3 cut(s) | 997, 1064, 1231 |
| MlyI | GAGTC | 2 cut(s) | 960, 1298 |
| MmeI | TCCRAC | 3 cut(s) | 90, 696, 1497 |
| MroI | TCCGGA | 1 cut(s) | 1810 |
| MroNI | GCCGGC | 1 cut(s) | 368 |
| MroXI | GAANNNNTTC | 2 cut(s) | 486, 884 |
| MseI | TTAA | 2 cut(s) | 84, 855 |
| MslI | CAYNNNNRTG | 4 cut(s) | 398, 916, 1011, 1613 |
| MspI | CCGG | 7 cut(s) | 107, 117, 320, 369, 389, 822, 1811 |
| Mva1269I | GAATGC | 1 cut(s) | 752 |
| MvnI | CGCG | 5 cut(s) | 74, 90, 924, 1442, 1647 |
| NaeI | GCCGGC | 1 cut(s) | 370 |
| NciI | CCSGG | 3 cut(s) | 107, 117, 320 |
| NdeI | CATATG | 3 cut(s) | 583, 610, 1075 |
| NgoMIV | GCCGGC | 1 cut(s) | 368 |
| NlaIII | CATG | 9 cut(s) | 175, 274, 643, 779, 791, 1036, 1262, 1618, 1792 |
| NlaIV | GGNNCC | 3 cut(s) | 441, 978, 1720 |
| NmeAIII | GCCGAG | 1 cut(s) | 541 |
| NmuCI | GTSAC | 5 cut(s) | 166, 336, 658, 889, 1505 |
| NspI | RCATGY | 2 cut(s) | 791, 1618 |
| PaeI | GCATGC | 1 cut(s) | 791 |
| PagI | TCATGA | 3 cut(s) | 270, 1032, 1788 |
| PceI | AGGCCT | 1 cut(s) | 884 |
| PciSI | GCTCTTC | 1 cut(s) | 24 |
| PctI | GAATGC | 1 cut(s) | 752 |
| PdiI | GCCGGC | 1 cut(s) | 370 |
| PdmI | GAANNNNTTC | 2 cut(s) | 486, 884 |
| PfeI | GAWTC | 3 cut(s) | 482, 675, 872 |
| Pfl23II | CGTACG | 1 cut(s) | 1020 |
| PflFI | GACNNNGTC | 2 cut(s) | 1028, 1288 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1259 |
| PfoI | TCCNGGA | 1 cut(s) | 1781 |
| Ple19I | CGATCG | 1 cut(s) | 78 |
| PleI | GAGTC | 2 cut(s) | 960, 1297 |
| PpsI | GAGTC | 2 cut(s) | 960, 1297 |
| Ppu21I | YACGTR | 1 cut(s) | 406 |
| Psp124BI | GAGCTC | 1 cut(s) | 45 |
| Psp1406I | AACGTT | 1 cut(s) | 713 |
| PspEI | GGTNACC | 1 cut(s) | 658 |
| PspFI | CCCAGC | 2 cut(s) | 57, 362 |
| PspLI | CGTACG | 1 cut(s) | 1020 |
| PspN4I | GGNNCC | 3 cut(s) | 441, 978, 1720 |
| PspPI | GGNCC | 5 cut(s) | 386, 440, 977, 1318, 1573 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1760, 1792 |
| PsuI | RGATCY | 5 cut(s) | 160, 193, 1365, 1688, 1718 |
| PsyI | GACNNNGTC | 2 cut(s) | 1028, 1288 |
| PvuI | CGATCG | 1 cut(s) | 78 |
| PvuII | CAGCTG | 3 cut(s) | 844, 1172, 1467 |
| RsaI | GTAC | 5 cut(s) | 176, 408, 1022, 1391, 1533 |
| RsaNI | GTAC | 5 cut(s) | 175, 407, 1021, 1390, 1532 |
| RseI | CAYNNNNRTG | 4 cut(s) | 398, 916, 1011, 1613 |
| SacI | GAGCTC | 1 cut(s) | 45 |
| SalI | GTCGAC | 1 cut(s) | 357 |
| SapI | GCTCTTC | 1 cut(s) | 24 |
| SaqAI | TTAA | 2 cut(s) | 84, 855 |
| Sau96I | GGNCC | 5 cut(s) | 386, 440, 977, 1318, 1573 |
| SchI | GAGTC | 2 cut(s) | 960, 1298 |
| SduI | GDGCHC | 2 cut(s) | 45, 770 |
| SfaNI | GCATC | 3 cut(s) | 920, 953, 1587 |
| SinI | GGWCC | 3 cut(s) | 440, 977, 1318 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 398, 916, 1011, 1613 |
| SmlI | CTYRAG | 2 cut(s) | 971, 1760 |
| SmoI | CTYRAG | 2 cut(s) | 971, 1760 |
| SphI | GCATGC | 1 cut(s) | 791 |
| Sse9I | AATT | 3 cut(s) | 997, 1064, 1231 |
| SseBI | AGGCCT | 1 cut(s) | 884 |
| SspMI | CTAG | 3 cut(s) | 546, 929, 1831 |
| SstI | GAGCTC | 1 cut(s) | 45 |
| StuI | AGGCCT | 1 cut(s) | 884 |
| StyI | CCWWGG | 2 cut(s) | 545, 1569 |
| TaaI | ACNGT | 5 cut(s) | 503, 783, 981, 1318, 1505 |
| TaiI | ACGT | 7 cut(s) | 280, 408, 716, 1022, 1032, 1563, 1734 |
| TaqI | TCGA | 3 cut(s) | 358, 678, 1590 |
| TaqII | GACCGA | 1 cut(s) | 638 |
| TasI | AATT | 3 cut(s) | 997, 1064, 1231 |
| TfiI | GAWTC | 3 cut(s) | 482, 675, 872 |
| Tru1I | TTAA | 2 cut(s) | 84, 855 |
| Tru9I | TTAA | 2 cut(s) | 84, 855 |
| TscAI | CASTG | 8 cut(s) | 192, 786, 882, 923, 1358, 1423, 1554, 1802 |
| TseFI | GTSAC | 5 cut(s) | 166, 336, 658, 889, 1505 |
| TseI | GCWGC | 8 cut(s) | 138, 141, 263, 342, 377, 908, 1192, 1467 |
| Tsp45I | GTSAC | 5 cut(s) | 166, 336, 658, 889, 1505 |
| TspDTI | ATGAA | 6 cut(s) | 188, 746, 796, 1057, 1656, 1698 |
| TspGWI | ACGGA | 1 cut(s) | 1301 |
| TspRI | CASTG | 8 cut(s) | 192, 786, 882, 923, 1358, 1423, 1554, 1802 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1028, 1288 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1259 |
| VpaK11BI | GGWCC | 3 cut(s) | 440, 977, 1318 |
| XapI | RAATTY | 2 cut(s) | 1064, 1231 |
| XceI | RCATGY | 2 cut(s) | 791, 1618 |
| XmaJI | CCTAGG | 1 cut(s) | 545 |
| XmiI | GTMKAC | 1 cut(s) | 358 |
| XmnI | GAANNNNTTC | 2 cut(s) | 486, 884 |
| XspI | CTAG | 3 cut(s) | 546, 929, 1831 |